7OLD: Putative guanine nucleotide-binding protein

Name: PDB 7OLD: Thermophilic eukaryotic 80S ribosome at pe/E (TI)-POST state
Published: 2022-01-26
License: https://creativecommons.org/publicdomain/zero/1.0/
Keywords: ribosome

Thermophilic eukaryotic 80S ribosome at pe/E (TI)-POST state. Determined by electron microscopy at 3.0 Å resolution. Released 26 Jan 2022.

Method: Electron microscopy
Resolution: 3.0 Å
Organism: Chaetomium thermophilum var. thermophilum DSM 1495
Chains: 85
Atoms: 214,209
Mol. weight: 3362.92 kDa
Ligands: MG, ZN, GDP
Released: 26 Jan 2022

Explore 7OLD in 3D Show helices and sheets RCSB PDB PDBe

Secondary structure: helices and β-sheets

7OLD contains 534 α-helices and 583 β-strands across 80 chains. Residue ranges use author residue numbering, as in the PDB file, from PDBe. To see them in 3D, choose the Cartoon representation with Secondary structure coloring: helices, sheets and coils get different colors.

Chain A: 1 helix, 32 β-strands

Element	Residues	Length	Sheet
β-strand	6-11	6	38
β-strand	18-23	6	39
β-strand	31-35	5	39
β-strand	40-42	3	39
β-strand	44-45	2	40
β-strand	53-54	2	40
β-strand	58	1	39
β-strand	66-71	6	41
β-strand	77-82	6	41
β-strand	86-91	6	41
β-strand	96-102	7	41
β-strand	108-113	6	42
β-strand	119-124	6	42
β-strand	129-133	5	42
β-strand	138-141	4	42
β-strand	154-155	2	43
β-strand	165-168	4	43
β-strand	174-178	5	43
β-strand	183-188	6	43
β-strand	195-200	6	44
β-strand	206	1	45
β-strand	207-211	5	44
β-strand	215-217	3	44
β-strand	220	1	45
β-strand	229-231	3	44
β-strand	239-241	3	46
β-strand	248-251	4	46
β-strand	256-260	5	46
β-strand	265-270	6	46
α-helix	282-284	3
β-strand	288-291	4	38
β-strand	297-301	5	38
β-strand	307-311	5	38

Chain B: 5 helices, 1 β-strand

Element	Residues	Length	Sheet
β-strand	27-28	2	55
α-helix	61-66	6
α-helix	72-77	6
α-helix	116-122	7
α-helix	128-153	26
α-helix	178-182	5

Chain C: 40 helices, 35 β-strands

Element	Residues	Length	Sheet
α-helix	6-12	7
β-strand	19-26	8	68
α-helix	32-40	9
β-strand	73-78	6	68
β-strand	101-106	6	68
α-helix	111-113	3
α-helix	114-123	10
β-strand	128-132	5	68
α-helix	139-150	12
β-strand	156-160	5	68
α-helix	163-164	2
α-helix	165-169	5
α-helix	173-194	22
β-strand	211-215	5	68
β-strand	220-223	4	68
α-helix	224-233	10
α-helix	241-244	4
α-helix	269-272	4
α-helix	274	1
α-helix	275-280	6
α-helix	281-291	11
α-helix	295-304	10
α-helix	307-309	3
α-helix	321-329	9
β-strand	331	1	68
α-helix	332-343	12
α-helix	345-346	2
α-helix	347-358	12
β-strand	359	1	69
α-helix	366-369	4
α-helix	371-373	3
β-strand	381-389	9	70
β-strand	396-404	9	70
β-strand	407	1	71
β-strand	412-416	5	70
β-strand	428-432	5	70
β-strand	435-437	3	70
β-strand	446	1	70
β-strand	450	1	71
β-strand	454-459	6	70
β-strand	469-472	4	70
α-helix	479	1
β-strand	480	1	69
α-helix	481-482	2
β-strand	491-493	3	72
β-strand	494-497	4	73
α-helix	503-516	14
β-strand	521-524	4	72
β-strand	530-534	5	72
α-helix	537-548	12
β-strand	556-559	4	73
α-helix	560-562	3
β-strand	566-569	4	74
α-helix	576	1
β-strand	577-579	3	75
β-strand	587-593	7	75
α-helix	594-596	3
α-helix	597-604	8
α-helix	606-608	3
α-helix	614-624	11
α-helix	629-634	6
β-strand	647-650	4	75
α-helix	659-661	3
α-helix	662-674	13
β-strand	683	1	74
β-strand	687-694	8	75
α-helix	708-719	12
β-strand	724-738	15	74
α-helix	739-751	13
β-strand	755-760	6	74
β-strand	767-775	9	74
α-helix	776-778	3
α-helix	782-789	8
β-strand	795-805	11	74
α-helix	817-829	13

Chain La: 5 helices, 6 β-strands

Element	Residues	Length	Sheet
α-helix	42-47	6
α-helix	65-68	4
β-strand	72-73	2	85
α-helix	78-81	4
α-helix	84-92	9
β-strand	98-103	6	86
β-strand	111-112	2	85
β-strand	124-127	4	86
β-strand	129-130	2	85
α-helix	132-140	9
β-strand	144-147	4	86

Chain LA: 6 helices, 15 β-strands

Element	Residues	Length	Sheet
α-helix	6-9	4
α-helix	30-32	3
α-helix	34-38	5
β-strand	40-49	10	81
β-strand	58-64	7	81
β-strand	71-77	7	81
α-helix	78	1
β-strand	79	1	82
β-strand	83	1	83
β-strand	87-91	5	81
β-strand	101-103	3	81
β-strand	112-114	3	81
β-strand	134-138	5	81
β-strand	145-149	5	81
β-strand	155-159	5	81
β-strand	163-166	4	81
β-strand	169	1	82
α-helix	182-189	8
α-helix	201-203	3
β-strand	224-225	2	84
β-strand	237-238	2	84

Chain Lb: 3 helices, 1 β-strand

Element	Residues	Length	Sheet
α-helix	12-17	6
β-strand	22	1	10
α-helix	23-26	4
α-helix	37-59	23

Chain LB: 14 helices, 16 β-strands

Element	Residues	Length	Sheet
α-helix	32-35	4
α-helix	40-41	2
β-strand	43	1	90
β-strand	45-59	15	91
β-strand	71-80	10	91
β-strand	84-95	12	92
β-strand	98-106	9	92
α-helix	112-115	4
α-helix	116-118	3
α-helix	131-134	4
α-helix	143-155	13
β-strand	158-165	8	92
α-helix	167-169	3
β-strand	179-183	5	92
β-strand	184	1	90
α-helix	189-198	10
β-strand	203-204	2	92
α-helix	206-208	3
β-strand	215-221	7	91
β-strand	224-228	5	93
α-helix	230-233	4
α-helix	236-240	5
β-strand	269-272	4	93
β-strand	275-287	13	91
β-strand	322-326	5	91
α-helix	335	1
β-strand	336-341	6	91
β-strand	357-360	4	91
α-helix	374-381	8
α-helix	385-387	3

Chain Lc: 5 helices, 4 β-strands

Element	Residues	Length	Sheet
α-helix	13-23	11
β-strand	25-28	4	103
α-helix	30-39	10
β-strand	44-47	4	103
α-helix	53-66	14
β-strand	70-72	3	103
α-helix	77-83	7
β-strand	92-97	6	103
α-helix	103-105	3

72 more chain groups are not listed. Open the entry in the viewer and use the sequence panel to see them.

Molecules and chains

Molecule	Chains	Type	Length	Organism	UniProt
26S rRNA	1	RNA	3337	Chaetomium thermophilum var. thermophilum DSM 1495
18S rRNA	2	RNA	1796	Chaetomium thermophilum var. thermophilum DSM 1495
5S rRNA	3	RNA	120	Chaetomium thermophilum var. thermophilum DSM 1495
5.8S rRNA	4	RNA	156	Chaetomium thermophilum var. thermophilum DSM 1495
pe/E tRNA	5	RNA	75	Chaetomium thermophilum var. thermophilum DSM 1495
Putative guanine nucleotide-binding protein	A	protein	316	Chaetomium thermophilum var. thermophilum DSM 1495	G0S9U0 (AlphaFold model)
HABP4_PAI-RBP1 domain-containing protein	B	protein	302	Chaetomium thermophilum var. thermophilum DSM 1495	G0S428 (AlphaFold model)
Elongation factor 2	C	protein	845	Chaetomium thermophilum var. thermophilum DSM 1495	G0S5T7 (AlphaFold model)
60S ribosomal protein L2-like protein	LA	protein	254	Chaetomium thermophilum var. thermophilum DSM 1495	G0S4P8 (AlphaFold model)
60S ribosomal protein L3-like protein	LB	protein	392	Chaetomium thermophilum var. thermophilum DSM 1495	G0RXW1
60S ribosomal protein L4-like protein	LC	protein	365	Chaetomium thermophilum var. thermophilum DSM 1495	G0SFC3
60S ribosomal protein l5-like protein	LD	protein	304	Chaetomium thermophilum var. thermophilum DSM 1495	G0SEG2

72 more molecules are not listed.

Sequence of entity 1 (1), FASTA

>7OLD_1 26S rRNA (chains 1)
AGGUUGACCUCGGAUCAGGUAGGAGGACCCGCUGAACUUAAGCAUAUCAAUAAGCGGAGG
AAAAGAAACCAACAGGGAUUGCCCUAGUAACGGCGAGUGAAGCGGCAACAGCUCAAAUUU
GAAAGCUGGCUUCGGCCCGCGUUGUAAUUUGGAGAGGAUGCUUUGGGCGAGGCUCCUUCU
GAGUUCCCUGGAACGGGACGCCACAGAGGGUGAGAGCCCCGUAUAGUUGGAAGCCAAGCC
UGUGUAAAGCUCCUUCGACGAGUCGAGUAGUUUGGGAAUGCUGCUCAAAAUGGGAGGUAA
AUUUCUUCUAAAGCUAAAUACCGGCCAGAGACCGAUAGCGCACAAGUAGAGUGAUCGAAA
GAUGAAAAGCACUUUGAAAAGAGGGUUAAAUAGCACGUGAAAUUGUUGAAAGGGAAGCGC
UUGUGACCAGACUUGCGCCCGGCGGAUCAUCCGGUGUUCUCACCGGUGCACUCCGCCGGG
CUCAGGCCAGCAUCGGUUCUGGCGGGGGGAUAAAGGCCCAGGGAAUGUGGCUCCUCCGGG
AGUGUUAUAGCCCUGGGUGUAAUACCCUCGCCGGGACCGAGGACCGCGCUCUGCAAGGAU
GCUGGCGUAAUGGUCACCAGCGACCCGUCUUGAAACACGGACCAAGGAGUCAAGGUUUUG
CGCGAGUGUUUGGGUGUAAAACCCGCACGCGUAAUGAAAGUGAACGUAGGUGAGAGCUUC
GGCGCAUCAUCGACCGAUCCUGAUGUAUUCGGAUGGAUUUGAGUAGGAGCGUUAAGCCUU
GGACCCGAAAGAUGGUGAACUAUGCUUGGAUAGGGUGAAGCCAGAGGAAACUCUGGUGGA
GGCUCGCAGCGGUUCUGACGUGCAAAUCGAUCGUCAAAUCUGAGCAUGGGGGCGAAAGAC
UAAUCGAACCAUCUAGUAGCUGGUUACCGCCGAAGUUUCCCUCAGGAUAGCAGUGUCGAC
CUUCAGUUUUAUGAGGUAAAGCGAAUGAUUAGGGACUCGGGGGCGAUUUUUAGCCUUCAU
CCAUUCUCAAACUUUAAAUAUGUAAGAAGCCCUUGUUACUUAACUGAACGUGGGCAUUCG
AAUGUAUCGACACUAGUGGGCCAUUUUUGGUAAGCAGAACUGGCGAUGCGGGAUGAACCG
AACGCGGGGUUAAGGUGCCGGAGUGGACGCUCAUCAGACACCACAAAAGGCGUUAGUACA
UCUUGACAGCAGGACGGUGGCCAUGGAAGUCGGAAUCCGCUAAGGACUGUGUAACAACUC
ACCUGCCGAAUGUACUAGCCCUGAAAAUGGAUGGCGCUCAAGCGUCCCACCCAUACCCCG
CCCUCAGGGUAGAAACGAUGCCCUGAGGAGUAGGCGGCCGUGGAGGUCAGUGACGAAGCC
UAGGGCGUGAGCCCGGGUCGAACGGCCUCUAGUGCAGAUCUUGGUGGUAGUAGCAAAUAC
UUCAAUGAGAACUUGAAGGACCGAAGUGGGGAAAGGUUCCAUGUGAACAGCGGUUGGACA
UGGGUUAGUCGAUCCUAAGCCAUAGGGAAGUUCCGUUUCAAAGGGGCACUCGUGCCCCGU
GUGGCGAAAGGGAAGCCGGUUAAUAUUCCGGCACCUGGAUGUGGGUUUUGCGCGGCAACG
CAACUGAACGCGGAGACGACGGCGGGGGCCCCGGGCAGAGUUCUCUUUUCUUCUUAACGG
UCUAUCACCCUGGAAACAGUUUGUCUGGAGAUAGGGUUUAAUGGCCGGAAGAGCCCGACA
CUUCUGUCGGGUCCGGUGCGCUCUCGACGUCCCUUGAAAAUCCGCGGGAGGGAAUAAUUC
UCACGCCAGGUCGUACUCAUAACCGCAGCAGGUCCCCAAGGUGAACAGCCUCUGGUUGAU
AGAACAAUGUAGAUAAGGGAAGUCGGCAAAAUAGAUCCGUAACUUCGGGAAAAGGAUUGG
CUCUAAGGGUUGGGCACGUUGGGCUUUGGGCGGACGCCCUGGGAGCAGAGGGCCUCUAGC
CGGGCAACCGGCCGGCGGCCCUCAGCACCCGGGGUUGAAGCCCUUAGCAGGCUUCGGCCG
UCCGGCGUGCGGUUAACAACCAACUUAGAACUGGUACGGACAGGGGGAAUCUGACUGUCU
AAUUAAAACAUAGCAUUGCGAUGGCCAGAAAGUGGUGUUGACGCAAUGUGAUUUCUGCCC
AGUGCUCUGAAUGUCAAAGUGAAGAAAUUCAACCAAGCGCGGGUAAACGGCGGGAGUAAC
UAUGACUCUCUUAAGGUAGCCAAAUGCCUCGUCAUCUAAUUAGUGACGCGCAUGAAUGGA
UUAACGAGAUUCCCACUGUCCCUAUCUACUAUCUAGCGAAACCACAGCCAAGGGAACGGG
CUUGGCAAAAUCAGCGGGGAAAGAAGACCCUGUUGAGCUUGACUCUAGUUUGACAUUGUG
AAAAGACAUAGGAGGUGUAGAAUAGGUGGGAGCUUCGGCGCCAGUGAAAUACCACUACUC
CUAUUGUUUUUUUACUUAUUCAAUGAAGCGGGGCUGGACUUGCGUCCAACUUCUGGAGUU
AAGGUCCUUCGCGGGCCGACCCGGGUUGAAGACAUUGUCAGGUGGGGAGUUUGGCUGGGG
CGGCACAUCUGUUAAACCAUAACGCAGGUGUCCUAAGGGGGGCUCAUGGAGAACAGAAAU
CUCCAGUAGAACAAAAGGGUAAAAGUCCCCUUGAUUUUGAUUUUCAGUGUGAAUACAAAC
CAUGAAAGUGUGGCCUAUCGAUCCUUUAGUCCCUCGAAAUUUGAGGCUAGAGGUGCCAGA
AAAGUUACCACAGGGAUAACUGGCUUGUGGCGGCCAAGCGUUCAUAGCGACGUCGCUUUU
UGAUCCUUCGAUGUCGGCUCUUCCUAUCAUACCGAAGCAGAAUUCGGUAAGCGUUGGAUU
GUUCACCCACUAAUAGGGAACGUGAGCUGGGUUUAGACCGUCGUGAGACAGGUUAGUUUU
ACCCUACUGAUGAACUCGUCGCAAUGGUAAUUCAGCUUAGUACGAGAGGAACCGCUGAUU
CAGAUAAUUGGUUUUUGCGGUUGUCCGACCGGGCAGUGCCGCGAAGCUACCAUCUGCUGG
AUAAUGGCUGAACGCCUCUAAGUCAGAAUCCAUGCCAGAACGCGACGAUACUACCCGCAC
GUUGUAGACGUAUAAGAAUAGGCUCCGGCCUCGUAUCCUAGCAGGCGAUUCCUCCGCCGG
CCUCGAAGUGGCCGUCGGUAAUUCGCGUAUUGCAAUUUAGACACGCGCGGGAUCAAAUCC
UUUGCAGACGACUUAGAUGUGCGAAAGGGUCCUGUAAGCAGUAGAGUAGCCUUGUUGUUA
CGAUCUGCUGAGGGUAAGCCCUCCUUCGCCUAGAUUU

Sequence of entity 2 (2), FASTA

>7OLD_2 18S rRNA (chains 2)
UACCUGGUUGAUUCUGCCAGUAGUCAUAUGCUUGUCUCAAAGAUUAAGCCAUGCAUGUCU
AAGUAUAAGCAAUUAUACAGCGAAACUGCGAAUGGCUCAUUAAAUCAGUUAUCGUUUAUU
UGAUAGUACCUUACUACAUGGAUAACCGUGGUAAUUCUAGAGCUAAUACAUGCUGAAAAU
CCCGACUUCGGAAGGGAUGUAUUUAUUAGAUUAAAAACCAAUGCCCUUCGGGGCUUUCUG
GUGAUUCAUAAUAACUUCUCGAAUCGCACGGCCUUGCGCCGGCGAUGGUUCAUUCAAAUU
UCUGCCCUAUCAACUUUCGACGGCUGGGUAUUGGCCAGCCGUGGUGACAACGGGUAACGG
AGGGUUAGGGCUCGACCCCGGAGAAGGAGCCUGAGAAACGGCUACUACAUCCAAGGAAGG
CAGCAGGCGCGCAAAUUACCCAAUCCCGACACGGGGAGGUAGUGACAAUAAAUACUGAUA
CAGGGCUCUUUCGGGUCUUGUAAUUGGAAUGAGUACAAUUUAAAUCCCUUAACGAGGAAC
AAUUGGAGGGCAAGUCUGGUGCCAGCAGCCGCGGUAAUUCCAGCUCCAAUAGCGUAUAUU
AAAGUUGUUGAGGUUAAAAAGCUCGUAGUUGAACCUUGGGCCUAGCCCGCCGGUCCGCCU
CACCGCGUGCACUGGCUGGGCUGGGCCUUUCCUUCUGGAGAACCGCAUGCCCUUCACUGG
GUGUGUCGGGGAACCAGGACUUUUACUCUGAACAAAUUAGAUCGCUUAAAGAAGGCCUAU
GCUUGAAUACAUUAGCAUGGAAUAAUAGAAUAGGACGUGUGGUUCUAUUUUGUUGGUUUC
UAGGACCGCCGUAAUGAUUAAUAGGGACAGUCGGGGGCGUCAGUAUUCAAUUGUCAGAGG
UGAAAUUCUUGGAUUUAUUGAAGACUAACAACUGCGAAAGCAUUCGCCAAGGAUGUUUUC
AUUAAUCAGGAACGAAAGUUAGGGGAUCGAAGACGAUCAGAUACCGUCGUAGUCUUAACC
AUAAACUAUGCCGAUUAGGGAUCGGACGGCGUUUAUUUUUGACCCGUUCGGCACCUUACG
AUAAAUCAAAAUGUUUGGGCUCCUGGGGGAGUAUGGUCGCAAGGCUGAAACUUAAAGAAA
UUGACGGAAGGGCACCACCAGGGGUGGAGCCUGCGGCUUAAUUUGACXCAACACGGGGAA
ACUCACCAGGUCCAGACACGAUGAGGAUUGACAGAUUGAGAGCUCUUUCUUGAUUUCGUG
GGUGGUGGUGCAUGGCCGUUCUUAGUUGGUGGAGUGAUUUGUCUGCUUAAUUGCGAUAAC
GAACGAGACCUUAACCUGCUAAAUAGCCCGUAUUGCCUUGGCAGUACGCCGGCUUCUUAG
AGGGACUAUCGGCUCAAGCCGAUGGAAGUUUGAGGCAAUAACAGGUCUGUGAUGCCCUUA
GAUGUUCUGGGCCGCACGCGCGCUACACUGACAGAGCCAGCGAGUACUCCCUUGGCCGAG
AGGCCCGGGUAAUCUUGUUAAACUCUGUCGUGCUGGGGAUAGAGCAUUGCAAUUAUUGCU
CUUCAACGAGGAAUCCCUAGUAAGCGCAAGUCAUCAGCUUGCGUUGAUUACGUCCCUGCC
CUUUGUACACACCGCCCGUCGCUACUACCGAUUGAACGGCUCAGUGAGGCUUUCGGACUG
GCCCAGAGAGGUCGGCAACGACCACUCAGGGCCGGAAAGUUAUCCAAACUCGGUCGUUUA
GAGGAAGUAAAAGUCGUAACAAGGUCUCCGUAGGUGAACCUGCGGAGGGAUCAUUU

Sequence of entity 3 (3), FASTA

>7OLD_3 5S rRNA (chains 3)
ACAUACGACCAUACCUAGUGGAAAACUCGGGAUCCCGUCCGCUCUCCCAUAGAUAAGCCA
CUAAGGGCGGGGUUAGUACUCAGGUCGGUGACGACUGGGGAAUCCCCCGUGUUGUAUGUU

Sequence of entity 4 (4), FASTA

>7OLD_4 5.8S rRNA (chains 4)
AAACUUUCAACAACGGAUCUCUUGGUUCUGGCAUCGAUGAAGAACGCAGCGAAAUGCGAU
AAGUAAUGUGAAUUGCAGAAUUCCGUGAAUCAUCGAAUCUUUGAACGCACAUUGCGCCCG
CCGGUAUUCCGGCGGGCAUGCCUGUUCGAGCGUCAU

Sequence of entity 5 (5), FASTA

>7OLD_5 pe/E tRNA (chains 5)
UCCGAUAUAGCGUAACGGCUAUCACAUCACGCUUUCACCGUGGAGACCGGGGUUCGACUC
CCCGUAUCGGAGCCA

Sequence of entity 6 (A), FASTA

>7OLD_6 Putative guanine nucleotide-binding protein (chains A)
MAEQLILKGTLEGHNGWVTSLATSMENPNMLLSGSRDKTLIIWNLTRDETQYGYPKRRLH
GHSHIVSDCVISSDGAYALSASWDKTLRLWELSTGTTTRRFVGHTGDVLSVSFSADNRQI
VSGSRDKTIKLWNTLGDCKYTITDKGHTEWVSCVRFSPNPQNPVIVSCGWDKLVKVWDLQ
SCKLQTDHIGHTGYINTVTISPDGSLCASGGKDGTTMLWDLNESKHLYSLNANDEIHALV
FSPNRYWLCAATASSIIIFDLEKKSKVDELKPEFQNVGKKSREPECVSLAWSADGQTLFA
GYTDGIIRAWGVMSRA

Sequence of entity 7 (B), FASTA

>7OLD_7 HABP4_PAI-RBP1 domain-containing protein (chains B)
MSVASKNPFDILGNTEDETPVVPVKAVEKTSTHTAKRNTDGLPPKGHAAGNRRGGANVSG
NEAAFRDRNAGRDANRGKPTDEAAPRGGRRGGFRGRGKREEGDRHPTRSAPRSNSEKQAS
QGWGATEGEAELKDEQAAEEIAQTEKKEAAEGEAAPEAEAKEEEPQEKVLTYDQYLAKLA
EKKLALEQENALKVRKPNEGAEDKFKGLKPLTKNEDEALFAPTVQKKERQRERKTKQIIE
IENRYVEERPRGGRGGRGARDGARGGRGRGGAPRGGRGGAKENAAPAINTNDETAFPSLG
SR

Sequence of entity 8 (C), FASTA

>7OLD_8 Elongation factor 2 (chains C)
MVNFTIEEIRALMDKPTNVRNMSVIAHVDHGKSTLTDSLLAKAGIISTGKAGEARATDTR
ADEQERGITIKSTAISLYGSLPDEEDLKDIVGQESNGKDFLINLIDSPGHVDFSSEVTAA
LRVTDGALVVVDTVEGVCVQTETVLRQALAERIKPVVIINKVDRALLELQVTKEDLYQSF
SRTIESVNVIISTYLDKALGDVQVYPEKGTVAFGSGLHGWAFTIRQFATRYAKKFGVDRN
KMMERLWGDNYFNPKTKKWTKSPTAADGTQLERAFCQFILDPIFRIFNAVMNFKKDEVNT
LLDKLNLKLPAEDRDKEGKQLLKAVMRTFLPAADCLLEMMILHLPSPVTAQKYRVETLYE
GPLDDEAAISIRDCNPNGPLMLYVSKMVPTSDKGRFYAFGRVFSGTVRSGLKVRIQGPNY
TPGKKDDLFIKAIQRTVLMMGAKVEPIDDLPAGNIVGLVGIDQFLLKSGTLTTSETAHNL
KVMKFSVSPVVRRSVQVKNAADLPKLVEGLKRLSKSDPCVLCYTSESGEHVVAGAGELHL
EICLKDLEEDHAGVPLNISDPVVQYRETVTSKSSMTALSKSPNKHNRLYMVAEPLDEELC
KEIEAGRISPRDDFKARARVLADDFGWDVTDARKIWAFGPDTTGANLLVDQTKAVQYLQE
IKDSVVSGFQWATREGPLGEEPMRSIRFNILDVTLHADAIHRGGGQIIPTARRVLYAATL
LAEPALLEPIFLVEIQVPESAMGGVYGVLTRRRGHVFSEEQRPGTPLFNIKAYLPVMESF
GFNGDLRAATSGQAFPQSVFDHWQVLPGGSPLDPTTKVGQVVQEMRKRKGLKVEVPGYEN
YYDKL

Sequence of entity 9 (LA), FASTA

>7OLD_9 60S ribosomal protein L2-like protein (chains LA)
MGRVIRNQRKGRGSVFTAHTRLRKAPAKFRPLDYAERHGYIRGIVKEIIHDPGRGAPLAR
VVFRSPYKYKQITETFIANEGMYTGQFIYAGKNAALTVGNILPLSSVPEGTVVSNVEEKP
GDRGALGRTSGNYVTVVGHNPDEGKTRIKLPSGAKKVVPSSSRGMIGIVAGGGRTDKPLL
KASRAKHKFAVKRNRWPKTRGVAMNPVDHPHGGGNHQHIGKASTISRYAAQGQKAGLIAA
RRTGLLRGTQKTKE

Sequence of entity 10 (LB), FASTA

>7OLD_10 60S ribosomal protein L3-like protein (chains LB)
MSHRKYEAPRHGSLAFLPRKRAARHRGRVKSFPKDDPKKPVHLTAAMGYKAGMTTIVRDL
DRPGAKAHKKEVVEAVTIIDCPPMVVVGLVGYIETPRGLRSLTTVWAEHLSDEVKRRFYK
NWYKSKKKAFTKYAKKYAENNGASITRELERIKKYCTVVRVLAHTQIRKTPLKQKKAHLM
EIQINGGSVADKVEFGRSLFEKPVTIDTIFEKDEMIDVIAVTKGHGFVGVTARWGTKKLP
RKTHKGLRKVACIGAWHPSHVQWTVARAGQMGYHHRTSVNHKIYRIGKGDDEANASTETD
LTKKKITPMGGFVRYGEVNNDYVMIKGSVPGVKKRIMTLRKSLFTHTSRKALEKVELKWI
DTSSEFGHGAFQTAAEKKQFMGTLKKDLQTSA

Sequence of entity 11 (LC), FASTA

>7OLD_11 60S ribosomal protein L4-like protein (chains LC)
MASRPTVTVFGADGKPTGATEVLPKVFSAPIRPDIVKHVHTGMAKNKRQPYAVSEKAGHQ
TSAESWGTGRAVARIPRVSGGGTHRAGQGAFGNMCRSGRMFAPTKIWRKWHVKINQGQKR
FATASALAASAVAPLLMARGHQVSTVPEVPLVVDSAAVAGDAVAKTAAAYKLLKAIGAGP
DVEKVKKSKKLRAGKGKMRGRRHRQRRGPLIVYSPEHDGKELVKGFRNIPGVETCPVDAL
NLLQLAPGGHLGRFIVWTSAAIKQLDAVYESKKGFFLPANIVSQADLSRLINSTEIQSVL
RAPKGEARTKRACVQKKNPLRNKQIMLRLNPYASTFAKEKLGEVKAEEGKPPKVPASFKE
LLHEA

Sequence of entity 12 (LD), FASTA

>7OLD_12 60S ribosomal protein l5-like protein (chains LD)
MAFHKLVKNSAYYSRFQTKFKRRRQGKTDYYARKRLITQAKNKYNAPKYRLVVRFTNRDI
ITQMVTSEINGDKIFAAAYSHELRAYGINHGLTNWAAAYATGLLLARRVLAKLGLDKTFT
GVEEPNGEYTLTEAAETEDGERRPFKAILDVGLARTSTGARVFGVMKGASDGGIFIPHSE
NRFPGYDIETEELDTEVLKKYIYGGHVAEYMETLADDDEERYKSQFVKYIEDDVEADSLE
ELYAEAHKQIRADPFRKYVSDAPKKSKEEWKAESLKYKKAKLSREERKARVEAKIKQLLA
EQDE

Ligands and cofactors

ID	Name	Formula	Copies
MG	Magnesium ion	Mg	3
ZN	Zinc ion	Zn	8
GDP	Guanosine-5'-diphosphate	C10 H15 N5 O11 P2	1

Primary citation

High-resolution structures of a thermophilic eukaryotic 80S ribosome reveal atomistic details of translocation. Kisonaite, M., Wild, K., Lapouge, K. et al. Nat Commun (2022) 13:476-476. DOI 10.1038/s41467-022-27967-9 · PubMed

Other PDB entries of the same protein (UniProt G0S9U0 (AlphaFold model), which also has an AlphaFold model), best resolution first:

7OLC 2.9 Å, Thermophilic eukaryotic 80S ribosome at idle POST state
8OO0 3.1 Å, Chaetomium thermophilum Methionine Aminopeptidase 2 autoproteolysis product at the 80S…
7Z3N 3.2 Å, Cryo-EM structure of the ribosome-associated RAC complex on the 80S ribosome - RAC-1…
7Z3O 3.3 Å, Cryo-EM structure of the ribosome-associated RAC complex on the 80S ribosome - RAC-2…

Browse structure collections

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