7OTW: DNA-PKcs

DNA-PKcs in complex with AZD7648. Determined by electron microscopy at 2.99 Å resolution. Released 12 Jan 2022.

Method
Electron microscopy
Resolution
2.99 Å
Organism
Homo sapiens
Chains
1
Atoms
29,038
Mol. weight
471.76 kDa
Ligands
MBW
Released
12 Jan 2022

Explore 7OTW in 3D Show helices and sheets RCSB PDB PDBe

Secondary structure: helices and β-sheets

7OTW contains 225 α-helices and 23 β-strands across 1 chain. Residue ranges use author residue numbering, as in the PDB file, from PDBe. To see them in 3D, choose the Cartoon representation with Secondary structure coloring: helices, sheets and coils get different colors.

Chain A: 225 helices, 23 β-strands

ElementResiduesLengthSheet
α-helix12-2211
α-helix34-4411
α-helix56-7015
α-helix78-9619
α-helix104-11512
α-helix130-14112
α-helix154-1618
α-helix173-1775
α-helix180-1845
α-helix192-20615
α-helix218-2225
α-helix225-2317
α-helix242-25413
α-helix258-2614
α-helix267-27711
α-helix285-2884
α-helix291-30010
α-helix309-32921
α-helix335-35016
α-helix358-36811
α-helix371-3766
α-helix381-39212
α-helix393-3975
α-helix407-4093
α-helix410-42314
α-helix429-4313
α-helix432-44413
α-helix451-46818
α-helix473-4753
α-helix476-4805
α-helix481-49111
α-helix494-4963
α-helix525-5273
α-helix528-5358
α-helix540-5445
α-helix545-5473
α-helix560-57819
β-strand583-58531
β-strand612-61431
α-helix617-63317
α-helix646-65914
α-helix664-67815
α-helix698-71720
α-helix718-7203
α-helix724-73512
α-helix738-7436
α-helix745-75814
α-helix763-77917
α-helix782-7854
α-helix786-7883
α-helix789-7924
α-helix793-7997
α-helix802-8043
α-helix849-86113
α-helix867-8715
α-helix873-8764
α-helix881-8833
β-strand89312
β-strand90612
α-helix911-92010
α-helix926-94419
α-helix959-97315
α-helix978-99619
α-helix1008-10114
α-helix1024-104219
α-helix1046-10494
α-helix1056-106712
α-helix1072-108514
α-helix1093-111321
α-helix1114-11163
α-helix1123-114018
α-helix1142-11454
β-strand114913
β-strand116313
α-helix1165-117410
α-helix1181-119414
α-helix1195-11973
α-helix1204-121411
α-helix1218-12258
α-helix1252-127221
α-helix1291-12977
α-helix1324-13263
α-helix1327-135024
α-helix1354-13585
α-helix1365-137713
α-helix1379-13824
α-helix1391-140818
α-helix1412-14209
α-helix1425-14328
α-helix1442-146120
α-helix1464-14674
α-helix1477-14826
α-helix1483-14886
α-helix1489-14913
α-helix1507-151913
α-helix1525-15328
β-strand153714
β-strand154015
β-strand155115
β-strand155414
α-helix1555-157319
α-helix1575-158410
α-helix1592-160615
α-helix1612-162514
α-helix1626-16327
α-helix1639-165517
α-helix1668-168013
α-helix1686-16927
α-helix1693-16953
α-helix1696-16994
α-helix1707-172115
α-helix17301
α-helix1734-175320
α-helix1756-176611
α-helix1775-178511
α-helix1791-180515
α-helix1813-18186
α-helix1819-18246
α-helix1825-18284
α-helix1835-184410
α-helix1847-18526
α-helix1863-188119
α-helix1912-192312
α-helix1935-195521
α-helix1971-19744
α-helix2094-210411
α-helix2124-213411
α-helix2140-215213
α-helix2154-21574
α-helix2158-21603
α-helix2161-217111
α-helix2184-219512
α-helix2206-222116
α-helix2228-224417
α-helix2255-22606
α-helix2270-228213
α-helix2285-22862
α-helix2297-23048
α-helix2305-23084
α-helix2313-233018
α-helix2338-235619
α-helix2359-237012
α-helix2372-23743
α-helix2375-238511
α-helix2386-23883
α-helix2393-240311
α-helix2413-24175
α-helix2420-24234
α-helix2429-244214
α-helix2443-24453
α-helix2448-24558
α-helix2459-24613
α-helix2470-248314
α-helix2497-250812
α-helix2509-25113
α-helix2515-252511
α-helix2535-25428
α-helix2543-25453
α-helix2558-25636
α-helix2788-279811
α-helix2802-282322
α-helix2826-284520
α-helix2852-286413
α-helix2873-288311
α-helix2886-289510
α-helix2896-29005
α-helix2918-293215
α-helix2936-29427
α-helix2943-29475
α-helix2952-29609
α-helix2965-297612
α-helix2988-300417
α-helix30081
α-helix3009-30135
α-helix3041-305313
α-helix3060-307011
α-helix3075-30817
α-helix3083-309311
α-helix3096-311520
α-helix3122-31298
α-helix3133-314513
α-helix3154-316411
α-helix3176-319520
α-helix3232-324817
α-helix3254-32618
α-helix3272-328615
α-helix3294-330613
α-helix3319-33235
α-helix3324-334320
α-helix3346-33516
α-helix3354-336310
α-helix3370-339324
α-helix3407-342923
α-helix3442-345514
α-helix3459-34646
α-helix3465-34673
α-helix3468-34714
α-helix3481-34877
α-helix3495-34984
α-helix3499-35057
α-helix3515-352410
α-helix3530-35378
α-helix3548-356215
α-helix3567-357812
α-helix3581-359313
α-helix3608-36147
α-helix3627-36326
α-helix3633-36375
α-helix3640-36434
α-helix3650-36523
α-helix3658-367215
α-helix3681-36833
α-helix3687-36893
β-strand370016
α-helix3716-37172
β-strand371816
β-strand3719-372247
β-strand373618
β-strand3739-374247
β-strand3746-374947
β-strand375218
α-helix3759-377719
α-helix3780-37834
β-strand3793-379759
β-strand3800-380349
β-strand3809-3811310
α-helix3812-38176
α-helix3822-38298
α-helix3835-384511
α-helix3854-38618
α-helix3864-387411
α-helix3882-38898
α-helix3894-391724
β-strand3928111
β-strand3929-3931310
β-strand3939111
α-helix3948-39514
α-helix3965-39684
α-helix3979-399315
α-helix3995-400612
α-helix4013-40219
α-helix4040-405011
α-helix4056-406712
α-helix4074-40829
α-helix4100-411112
α-helix4114-41174
α-helix4122-41243
α-helix6003-60097

Molecules and chains

MoleculeChainsTypeLengthOrganismUniProt
DNA-dependent protein kinase catalytic subunit,DNA-PKcsAprotein4148Homo sapiensP78527
Sequence of entity 1 (A), FASTA
>7OTW_1 DNA-dependent protein kinase catalytic subunit,DNA-PKcs (chains A)
MAGSGAGVRCSLLRLQETLSAADRCGAALAGHQLIRGLGQECVLSSSPAVLALQTSLVFS
RDFGLLVFVRKSLNSIEFRECREEILKFLCIFLEKMGQKIAPYSVEIKNTCTSVYTKDRA
AKCKIPALDLLIKLLQTFRSSRLMDEFKIGELFSKFYGELALKKKIPDTVLEKVYELLGL
LGEVHPSEMINNAENLFRAFLGELKTQMTSAVREPKLPVLAGCLKGLSSLLCNFTKSMEE
DPQTSREIFNFVLKAIRPQIDLKRYAVPSAGLRLFALHASQFSTCLLDNYVSLFEVLLKW
CAHTNVELKKAALSALESFLKQVSNMVAKNAEMHKNKLQYFMEQFYGIIRNVDSNNKELS
IAIRGYGLFAGPCKVINAKDVDFMYVELIQRCKQMFLTQTDTGDDRVYQMPSFLQSVASV
LLYLDTVPEVYTPVLEHLVVMQIDSFPQYSPKMQLVCCRAIVKVFLALAAKGPVLRNCIS
TVVHQGLIRICSKPVVLPKGPESESEDHRASGEVRTGKWKVPTYKDYVDLFRHLLSSDQM
MDSILADEAFFSVNSSSESLNHLLYDEFVKSVLKIVEKLDLTLEIQTVGEQENGDEAPGV
WMIPTSDPAANLHPAKPKDFSAFINLVEFCREILPEKQAEFFEPWVYSFSYELILQSTRL
PLISGFYKLLSITVRNAKKIKYFEGVSPKSLKHSPEDPEKYSCFALFVKFGKEVAVKMKQ
YKDELLASCLTFLLSLPHNIIELDVRAYVPALQMAFKLGLSYTPLAEVGLNALEEWSIYI
DRHVMQPYYKDILPCLDGYLKTSALSDETKNNWEVSALSRAAQKGFNKVVLKHLKKTKNL
SSNEAISLEEIRIRVVQMLGSLGGQINKNLLTVTSSDEMMKSYVAWDREKRLSFAVPFRE
MKPVIFLDVFLPRVTELALTASDRQTKVAACELLHSMVMFMLGKATQMPEGGQGAPPMYQ
LYKRTFPVLLRLACDVDQVTRQLYEPLVMQLIHWFTNNKKFESQDTVALLEAILDGIVDP
VDSTLRDFCGRCIREFLKWSIKQITPQQQEKSPVNTKSLFKRLYSLALHPNAFKRLGASL
AFNNIYREFREEESLVEQFVFEALVIYMESLALAHADEKSLGTIQQCCDAIDHLCRIIEK
KHVSLNKAKKRRLPRGFPPSASLCLLDLVKWLLAHCGRPQTECRHKSIELFYKFVPLLPG
NRSPNLWLKDVLKEEGVSFLINTFEGGGCGQPSGILAQPTLLYLRGPFSLQATLCWLDLL
LAALECYNTFIGERTVGALQVLGTEAQSSLLKAVAFFLESIAMHDIIAAEKCFGTGAAGN
RTSPQEGERYNYSKCTVVVRIMEFTTTLLNTSPEGWKLLKKDLCNTHLMRVLVQTLCEPA
SIGFNIGDVQVMAHLPDVCVNLMKALKMSPYKDILETHLREKITAQSIEELCAVNLYGPD
AQVDRSRLAAVVSACKQLHRAGLLHNILPSQSTDLHHSVGTELLSLVYKGIAPGDERQCL
PSLDLSCKQLASGLLELAFAFGGLCERLVSLLLNPAVLSTASLGSSQGSVIHFSHGEYFY
SLFSETINTELLKNLDLAVLELMQSSVDNTKMVSAVLNGMLDQSFRERANQKHQGLKLAT
TILQHWKKCDSWWAKDSPLETKMAVLALLAKILQIDSSVSFNTSHGSFPEVFTTYISLLA
DTKLDLHLKGQAVTLLPFFTSLTGGSLEELRRVLEQLIVAHFPMQSREFPPGTPRFNNYV
DCMKKFLDALELSQSPMLLELMTEVLCREQQHVMEELFQSSFRRIARRGSCVTQVGLLES
VYEMFRKDDPRLSFTRQSFVDRSLLTLLWHCSLDALREFFSTIVVDAIDVLKSRFTKLNE
STFDTQITKKMGYYKILDVMYSRLPKDDVHAKESKINQVFHGSCITEGNELTKTLIKLCY
DAFTENMAGENQLLERRRLYHCAAYNCAISVICCVFNELKFYQGFLFSEKPEKNLLIFEN
LIDLKRRYNFPVEVEVPMERKKKYIEIRKEAREAANGDSDGPSYMSSLSYLADSTLSEEM
SQFDFSTGVQSYSYSSQDPRPATGRFRRREQRDPTVHDDVLELEMDELNRHECMAPLTAL
VKHMHRSLGPPQGEEDSVPRDLPSWMKFLHGKLGNPIVPLNIRLFLAKLVINTEEVFRPY
AKHWLSPLLQLAASENNGGEGIHYMVVEIVATILSWTGLATPTGVPKDEVLANRLLNFLM
KHVFHPKRAVFRHNLEIIKTLVECWKDCLSIPYRLIFEKFSGKDPNSKDNSVGIQLLGIV
MANDLPPYDPQCGIQSSEYFQALVNNMSFVRYKEVYAAAAEVLGLILRYVMERKNILEES
LCELVAKQLKQHQNTMEDKFIVCLNKVTKSFPPLADRFMNAVFFLLPKFHGVLKTLCLEV
VLCRVEGMTELYFQLKSKDFVQVMRHRDDERQKVCLDIIYKMMPKLKPVELRELLNPVVE
FVSHPSTTCREQMYNILMWIHDNYRDPESETDNDSQEIFKLAKDVLIQGLIDENPGLQLI
IRNFWSHETRLPSNTLDRLLALNSLYSPKIEVHFLSLATNFLLEMTSMSPDYPNPMFEHP
LSECEFQEYTIDSDWRFRSTVLTPMFVETQASQGTLQTRTQEGSLSARWPVAGQIRATQQ
QHDFTLTQTADGRSSFDWLTGSSTDPLVDHTSPSSDSLLFAHKRSERLQRAPLKSVGPDF
GKKRLGLPGDEVDNKVKGAAGRTDLLRLRRRFMRDQEKLSLMYARKGVAEQKREKEIKSE
LKMKQDAQVVLYRSYRHGDLPDIQIKHSSLITPLQAVAQRDPIIAKQLFSSLFSGILKEM
DKFKTLSEKNNITQKLLQDFNRFLNTTFSFFPPFVSCIQDISCQHAALLSLDPAAVSAGC
LASLQQPVGIRLLEEALLRLLPAELPAKRVRGKARLPPDVLRWVELAKLYRSIGEYDVLR
GIFTSEIGTKQITQSALLAEARSDYSEAAKQYDEALNKQDWVDGEPTEAEKDFWELASLD
CYNHLAEWKSLEYCSTASIDSENPPDLNKIWSEPFYQETYLPYMIRSKLKLLLQGEADQS
LLTFIDKAMHGELQKAILELHYSQELSLLYLLQDDVDRAKYYIQNGIQSFMQNYSSIDVL
LHQSRLTKLQSVQALTEIQEFISFISKQGNLSSQVPLKRLLNTWTNRYPDAKMDPMNIWD
DIITNRCFFLSKIEEKLTPLPEDNSMNVDQDGDPSDRMEVQEQEEDISSLIRSCKFSMKM
KMIDSARKQNNFSLAMKLLKELHKESKTRDDWLVSWVQSYCRLSHCRSRSQGCSEQVLTV
LKTVSLLDENNVSSYLSKNILAFRDQNILLGTTYRIIANALSSEPACLAEIEEDKARRIL
ELSGSSSEDSEKVIAGLYQRAFQHLSEAVQAAEEEAQPPSWSCGPAAGVIDAYMTLADFC
DQQLRKEEENASVIDSAELQAYPALVVEKMLKALKLNSNEARLKFPRLLQIIERYPEETL
SLMTKEISSVPCWQFISWISHMVALLDKDQAVAVQHSVEEITDNYPQAIVYPFIISSESY
SFKDTSTGHKNKEFVARIKSKLDQGGVIQDFINALDQLSNPELLFKDWSNDVRAELAKTP
VNKKNIEKMYERMYAALGDPKAPGLGAFRRKFIQTFGKEFDKHFGKGGSKLLRMKLSDFN
DITNMLLLKMNKDSKPPGNLKECSPWMSDFKVEFLRNELEIPGQYDGRGKPLPEYHVRIA
GFDERVTVMASLRRPKRIIIRGHDEREHPFLVKGGEDLRQDQRVEQLFQVMNGILAQDSA
CSQRALQLRTYSVVPMTSRLGLIEWLENTVTLKDLLLNTMSQEEKAAYLSDPRAPPCEYK
DWLTKMSGKHDVGAYMLMYKGANRTETVTSFRKRESKVPADLLKRAFVRMSTSPEAFLAL
RSHFASSHALICISHWILGIGDRHLNNFMVAMETGGVIGIDFGHAFGSATQFLPVPELMP
FRLTRQFINLMLPMKETGLMYSIMVHALRAFRSDPGLLTNTMDVFVKEPSFDWKNFEQKM
LKKGGSWIQEINVAEKNWYPRQKICYAKRKLAGANPAVITCDELLLGHEKAPAFRDYVAV
ARGSKDHNIRAQEPESGLSEETQVKCLMDQATDPNILGRTWEGWEPWMXXXXXXXXXXXX
XXXXXXXX

Ligands and cofactors

IDNameFormulaCopies
MBW7-methyl-2-[(7-methyl-[1,2,4]triazolo[1,5-a]pyridin-6-yl)amino]-9-(oxan-4-yl)pu…C18 H20 N8 O21

Primary citation

Structural insights into inhibitor regulation of the DNA repair protein DNA-PKcs. Liang, S., Thomas, S.E., Chaplin, A.K. et al. Nature (2022) 601:643-648. DOI 10.1038/s41586-021-04274-9 · PubMed

Other PDB entries of the same protein (UniProt P78527), best resolution first:

Browse structure collections

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