7SZK: 27a
Cryo-EM structure of 27a bound to E. coli RNAP and rrnBP1 promoter complex. Determined by electron microscopy at 2.94 Å resolution. Released 13 Jul 2022.
- Method
- Electron microscopy
- Resolution
- 2.94 Å
- Organism
- Escherichia coli K-12
- Chains
- 8
- Atoms
- 29,759
- Mol. weight
- 500.65 kDa
- Ligands
- MG, D9X, ZN
- Released
- 13 Jul 2022
Explore 7SZK in 3D
Show helices and sheets
RCSB PDB
PDBe
Secondary structure: helices and β-sheets
7SZK contains 162 α-helices and 225 β-strands across 6 chains. Residue ranges use author residue numbering, as in the PDB file, from PDBe. To see them in 3D, choose the Cartoon representation with Secondary structure coloring: helices, sheets and coils get different colors.
Chain A: 6 helices, 17 β-strands
| Element | Residues | Length | Sheet |
|---|
| β-strand | 13 | 1 | 1 |
| β-strand | 17 | 1 | 1 |
| β-strand | 23-31 | 9 | 1 |
| α-helix | 35-49 | 15 | |
| β-strand | 53-61 | 9 | 2 |
| β-strand | 74 | 1 | 3 |
| α-helix | 78-86 | 9 | |
| β-strand | 90 | 1 | 4 |
| β-strand | 97-105 | 9 | 2 |
| β-strand | 108-111 | 4 | 3 |
| α-helix | 112-114 | 3 | |
| β-strand | 115 | 1 | 2 |
| α-helix | 116-117 | 2 | |
| β-strand | 123 | 1 | 4 |
| β-strand | 129-133 | 5 | 3 |
| β-strand | 139-149 | 11 | 2 |
| β-strand | 152-153 | 2 | 5 |
| α-helix | 155-160 | 6 | |
| β-strand | 171-172 | 2 | 2 |
| β-strand | 175-176 | 2 | 5 |
| β-strand | 180-189 | 10 | 1 |
| β-strand | 199-207 | 9 | 1 |
| α-helix | 213-232 | 20 | |
Chain B: 7 helices, 18 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 9-11 | 3 | |
| β-strand | 13-17 | 5 | 6 |
| β-strand | 24-31 | 8 | 6 |
| α-helix | 35-49 | 15 | |
| β-strand | 52-61 | 10 | 7 |
| β-strand | 74 | 1 | 8 |
| α-helix | 78-86 | 9 | |
| β-strand | 90-91 | 2 | 9 |
| β-strand | 98-105 | 8 | 7 |
| β-strand | 108-111 | 4 | 8 |
| α-helix | 112-114 | 3 | |
| β-strand | 115 | 1 | 7 |
| α-helix | 116-117 | 2 | |
| β-strand | 122-123 | 2 | 9 |
| β-strand | 129-133 | 5 | 8 |
| β-strand | 139-150 | 12 | 7 |
| β-strand | 152-153 | 2 | 10 |
| α-helix | 155-160 | 6 | |
| β-strand | 170-172 | 3 | 7 |
| β-strand | 175-176 | 2 | 10 |
| β-strand | 183-189 | 7 | 6 |
| β-strand | 192 | 1 | 11 |
| β-strand | 195 | 1 | 11 |
| β-strand | 199-205 | 7 | 6 |
| α-helix | 213-232 | 20 | |
Chain C: 58 helices, 101 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 5-9 | 5 | |
| α-helix | 11-12 | 2 | |
| β-strand | 13-14 | 2 | 12 |
| α-helix | 19-20 | 2 | |
| α-helix | 29-39 | 11 | |
| α-helix | 49-56 | 8 | |
| α-helix | 57 | 1 | |
| β-strand | 59-60 | 2 | 13 |
| β-strand | 66-75 | 10 | 13 |
| α-helix | 82-88 | 7 | |
| β-strand | 93-104 | 12 | 13 |
| β-strand | 115-117 | 3 | 13 |
| β-strand | 122-128 | 7 | 13 |
| α-helix | 129-130 | 2 | |
| β-strand | 136-137 | 2 | 14 |
| β-strand | 142-145 | 4 | 14 |
| β-strand | 148-151 | 4 | 15 |
| α-helix | 152 | 1 | |
| β-strand | 154-155 | 2 | 16 |
| β-strand | 158 | 1 | 16 |
| α-helix | 164-166 | 3 | |
| β-strand | 173-177 | 5 | 16 |
| β-strand | 180 | 1 | 17 |
| α-helix | 182-183 | 2 | |
| β-strand | 184-187 | 4 | 16 |
| β-strand | 195-197 | 3 | 16 |
| β-strand | 205 | 1 | 16 |
| α-helix | 207-212 | 6 | |
| α-helix | 217-224 | 8 | |
| β-strand | 229-230 | 2 | 18 |
| β-strand | 240 | 1 | 18 |
| α-helix | 244-246 | 3 | |
| β-strand | 250 | 1 | 19 |
| β-strand | 257 | 1 | 20 |
| β-strand | 260 | 1 | 20 |
| β-strand | 268 | 1 | 19 |
| α-helix | 271-280 | 10 | |
| β-strand | 284 | 1 | 18 |
| α-helix | 289-292 | 4 | |
| β-strand | 296 | 1 | 21 |
| β-strand | 297 | 1 | 22 |
| β-strand | 301 | 1 | 23 |
| β-strand | 311 | 1 | 23 |
| β-strand | 316 | 1 | 21 |
| α-helix | 319-327 | 9 | |
| β-strand | 333-334 | 2 | 18 |
| β-strand | 335 | 1 | 22 |
| α-helix | 346-353 | 8 | |
| α-helix | 359-370 | 12 | |
| α-helix | 378-389 | 12 | |
| β-strand | 396 | 1 | 17 |
| α-helix | 399-408 | 10 | |
| α-helix | 422-437 | 16 | |
| β-strand | 451-454 | 4 | 15 |
| α-helix | 456-481 | 26 | |
| α-helix | 496-507 | 12 | |
| β-strand | 512-514 | 3 | 14 |
| α-helix | 515-516 | 2 | |
| α-helix | 520-527 | 8 | |
| α-helix | 540-542 | 3 | |
| α-helix | 552-554 | 3 | |
| β-strand | 558 | 1 | 24 |
| β-strand | 575 | 1 | 24 |
| β-strand | 580-581 | 2 | 25 |
| β-strand | 587-588 | 2 | 25 |
| β-strand | 589-594 | 6 | 26 |
| β-strand | 598 | 1 | 27 |
| β-strand | 599-606 | 8 | 26 |
| α-helix | 608-613 | 6 | |
| β-strand | 616-617 | 2 | 26 |
| β-strand | 623 | 1 | 28 |
| β-strand | 628 | 1 | 27 |
| β-strand | 629 | 1 | 28 |
| β-strand | 634-637 | 4 | 26 |
| β-strand | 642-645 | 4 | 26 |
| α-helix | 647-649 | 3 | |
| β-strand | 652-654 | 3 | 26 |
| α-helix | 663-666 | 4 | |
| α-helix | 671-673 | 3 | |
| β-strand | 674 | 1 | 29 |
| α-helix | 676-685 | 10 | |
| α-helix | 686-688 | 3 | |
| β-strand | 689 | 1 | 30 |
| β-strand | 700-701 | 2 | 12 |
| α-helix | 705-711 | 7 | |
| β-strand | 716-717 | 2 | 31 |
| β-strand | 722-728 | 7 | 32 |
| β-strand | 731-736 | 6 | 32 |
| β-strand | 749-752 | 4 | 32 |
| β-strand | 757-758 | 2 | 33 |
| β-strand | 763 | 1 | 34 |
| β-strand | 764-765 | 2 | 33 |
| β-strand | 768-769 | 2 | 31 |
| β-strand | 776-777 | 2 | 32 |
| β-strand | 782-785 | 4 | 31 |
| β-strand | 789-790 | 2 | 35 |
| β-strand | 793-794 | 2 | 35 |
| β-strand | 798-804 | 7 | 36 |
| β-strand | 816-819 | 4 | 36 |
| α-helix | 821-824 | 4 | |
| β-strand | 830-841 | 12 | 34 |
| β-strand | 842 | 1 | 37 |
| β-strand | 847 | 1 | 37 |
| β-strand | 849 | 1 | 38 |
| α-helix | 859-862 | 4 | |
| β-strand | 865 | 1 | 39 |
| β-strand | 870 | 1 | 40 |
| β-strand | 871 | 1 | 39 |
| α-helix | 872 | 1 | |
| β-strand | 876-877 | 2 | 34 |
| β-strand | 882-884 | 3 | 40 |
| β-strand | 887-889 | 3 | 38 |
| α-helix | 897-906 | 10 | |
| β-strand | 913-915 | 3 | 38 |
| β-strand | 918-919 | 2 | 40 |
| α-helix | 920-921 | 2 | |
| β-strand | 926-935 | 10 | 34 |
| β-strand | 936 | 1 | 41 |
| α-helix | 943-980 | 38 | |
| α-helix | 986-991 | 6 | |
| α-helix | 994-999 | 6 | |
| α-helix | 1006-1037 | 32 | |
| β-strand | 1040 | 1 | 41 |
| β-strand | 1046-1058 | 13 | 34 |
| α-helix | 1059-1060 | 2 | |
| β-strand | 1065 | 1 | 42 |
| β-strand | 1066-1067 | 2 | 43 |
| β-strand | 1075 | 1 | 42 |
| β-strand | 1076-1080 | 5 | 36 |
| α-helix | 1082-1084 | 3 | |
| β-strand | 1087 | 1 | 44 |
| β-strand | 1093 | 1 | 44 |
| β-strand | 1096-1098 | 3 | 36 |
| α-helix | 1100-1102 | 3 | |
| β-strand | 1108 | 1 | 29 |
| α-helix | 1110-1133 | 24 | |
| α-helix | 1138-1150 | 13 | |
| α-helix | 1167-1176 | 10 | |
| β-strand | 1182-1183 | 2 | 12 |
| α-helix | 1192-1201 | 10 | |
| β-strand | 1209-1210 | 2 | 36 |
| β-strand | 1213 | 1 | 44 |
| α-helix | 1219 | 1 | |
| β-strand | 1220 | 1 | 44 |
| α-helix | 1221 | 1 | |
| β-strand | 1225-1232 | 8 | 36 |
| β-strand | 1233-1234 | 2 | 43 |
| β-strand | 1235 | 1 | 30 |
| α-helix | 1239-1241 | 3 | |
| β-strand | 1244-1246 | 3 | 45 |
| β-strand | 1251 | 1 | 46 |
| β-strand | 1252 | 1 | 47 |
| β-strand | 1258 | 1 | 46 |
| β-strand | 1268-1269 | 2 | 48 |
| α-helix | 1272-1280 | 9 | |
| α-helix | 1284-1292 | 9 | |
| α-helix | 1298-1310 | 13 | |
| α-helix | 1321-1332 | 12 | |
| β-strand | 1335-1339 | 5 | 49 |
Chain D: 63 helices, 83 β-strands
| Element | Residues | Length | Sheet |
|---|
| β-strand | 20-24 | 5 | 49 |
| α-helix | 27-33 | 7 | |
| β-strand | 37 | 1 | 50 |
| β-strand | 44 | 1 | 51 |
| β-strand | 51 | 1 | 51 |
| α-helix | 52 | 1 | |
| β-strand | 84 | 1 | 52 |
| β-strand | 91 | 1 | 52 |
| α-helix | 95-99 | 5 | |
| β-strand | 103-112 | 10 | 50 |
| α-helix | 115-118 | 4 | |
| α-helix | 123-127 | 5 | |
| α-helix | 132-139 | 8 | |
| β-strand | 144-146 | 3 | 53 |
| β-strand | 159-160 | 2 | 53 |
| α-helix | 162-171 | 10 | |
| β-strand | 178-179 | 2 | 53 |
| α-helix | 182-191 | 10 | |
| α-helix | 194-207 | 14 | |
| α-helix | 211-229 | 19 | |
| α-helix | 234-237 | 4 | |
| β-strand | 238-244 | 7 | 50 |
| α-helix | 247-249 | 3 | |
| α-helix | 253 | 1 | |
| β-strand | 254 | 1 | 54 |
| α-helix | 255 | 1 | |
| β-strand | 260 | 1 | 54 |
| β-strand | 261-262 | 2 | 55 |
| α-helix | 264-285 | 22 | |
| α-helix | 289-307 | 19 | |
| α-helix | 315 | 1 | |
| β-strand | 316 | 1 | 56 |
| α-helix | 317 | 1 | |
| β-strand | 323 | 1 | 56 |
| α-helix | 324 | 1 | |
| α-helix | 327-331 | 5 | |
| α-helix | 337-340 | 4 | |
| β-strand | 346-347 | 2 | 48 |
| β-strand | 350-356 | 7 | 45 |
| β-strand | 365-369 | 5 | 45 |
| α-helix | 370-387 | 18 | |
| α-helix | 394-403 | 10 | |
| α-helix | 406-415 | 10 | |
| β-strand | 421-424 | 4 | 45 |
| α-helix | 431-433 | 3 | |
| β-strand | 434-442 | 9 | 45 |
| β-strand | 446-448 | 3 | 45 |
| α-helix | 451-453 | 3 | |
| α-helix | 454-457 | 4 | |
| β-strand | 465-469 | 5 | 45 |
| α-helix | 474-483 | 10 | |
| β-strand | 485 | 1 | 45 |
| β-strand | 491 | 1 | 57 |
| β-strand | 498 | 1 | 57 |
| α-helix | 505-513 | 9 | |
| β-strand | 526-527 | 2 | 58 |
| α-helix | 530-539 | 10 | |
| β-strand | 547-556 | 10 | 58 |
| β-strand | 564-573 | 10 | 58 |
| α-helix | 574-579 | 6 | |
| α-helix | 589-591 | 3 | |
| α-helix | 598-611 | 14 | |
| α-helix | 615-635 | 21 | |
| α-helix | 641-643 | 3 | |
| α-helix | 645-647 | 3 | |
| α-helix | 650-669 | 20 | |
| α-helix | 675-703 | 29 | |
| β-strand | 706-708 | 3 | 59 |
| β-strand | 713-715 | 3 | 59 |
| α-helix | 721-728 | 8 | |
| α-helix | 734-741 | 8 | |
| β-strand | 748 | 1 | 60 |
| β-strand | 754 | 1 | 60 |
| α-helix | 769-803 | 35 | |
| β-strand | 808 | 1 | 61 |
| β-strand | 809-811 | 3 | 62 |
| β-strand | 820-822 | 3 | 63 |
| β-strand | 825-827 | 3 | 64 |
| β-strand | 828 | 1 | 65 |
| β-strand | 830-833 | 4 | 64 |
| α-helix | 835-839 | 5 | |
| β-strand | 843 | 1 | 66 |
| β-strand | 844 | 1 | 63 |
| α-helix | 847 | 1 | |
| β-strand | 848-849 | 2 | 67 |
| α-helix | 850 | 1 | |
| β-strand | 856-858 | 3 | 67 |
| β-strand | 863 | 1 | 66 |
| α-helix | 866-874 | 9 | |
| β-strand | 880-882 | 3 | 63 |
| α-helix | 885-887 | 3 | |
| β-strand | 894-895 | 2 | 62 |
| α-helix | 896-899 | 4 | |
| β-strand | 914 | 1 | 61 |
| α-helix | 915-924 | 10 | |
| α-helix | 925-929 | 5 | |
| β-strand | 949-951 | 3 | 68 |
| β-strand | 956 | 1 | 69 |
| β-strand | 959-961 | 3 | 70 |
| β-strand | 965-967 | 3 | 71 |
| β-strand | 973-975 | 3 | 71 |
| β-strand | 980-983 | 4 | 70 |
| β-strand | 985 | 1 | 72 |
| β-strand | 991 | 1 | 72 |
| β-strand | 994 | 1 | 65 |
| β-strand | 995-997 | 3 | 70 |
| β-strand | 1002-1003 | 2 | 68 |
| β-strand | 1011 | 1 | 69 |
| β-strand | 1016-1019 | 4 | 68 |
| β-strand | 1033 | 1 | 73 |
| β-strand | 1035-1038 | 4 | 74 |
| β-strand | 1042 | 1 | 75 |
| β-strand | 1046 | 1 | 75 |
| β-strand | 1050 | 1 | 76 |
| β-strand | 1057 | 1 | 76 |
| β-strand | 1077-1080 | 4 | 74 |
| β-strand | 1081 | 1 | 77 |
| β-strand | 1087 | 1 | 77 |
| β-strand | 1089 | 1 | 78 |
| α-helix | 1090 | 1 | |
| β-strand | 1096 | 1 | 78 |
| β-strand | 1098 | 1 | 74 |
| α-helix | 1110 | 1 | |
| β-strand | 1115 | 1 | 73 |
| α-helix | 1116 | 1 | |
| α-helix | 1138-1146 | 9 | |
| α-helix | 1153-1155 | 3 | |
| β-strand | 1156 | 1 | 79 |
| β-strand | 1161-1165 | 5 | 80 |
| β-strand | 1175-1178 | 4 | 80 |
| β-strand | 1187-1188 | 2 | 80 |
| β-strand | 1203-1204 | 2 | 80 |
| β-strand | 1209 | 1 | 79 |
| α-helix | 1217-1224 | 8 | |
| α-helix | 1226-1242 | 17 | |
| α-helix | 1250-1260 | 11 | |
| β-strand | 1263-1266 | 4 | 81 |
| β-strand | 1277-1279 | 3 | 81 |
| α-helix | 1280-1292 | 13 | |
| β-strand | 1302-1304 | 3 | 81 |
| α-helix | 1309-1314 | 6 | |
| α-helix | 1319-1325 | 7 | |
| α-helix | 1328-1338 | 11 | |
| β-strand | 1341-1342 | 2 | 49 |
| α-helix | 1347-1353 | 7 | |
| α-helix | 1363-1372 | 10 | |
Chain E: 5 helices, 0 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 7-12 | 6 | |
| α-helix | 19-31 | 13 | |
| α-helix | 40-41 | 2 | |
| α-helix | 46-55 | 10 | |
| α-helix | 61-76 | 16 | |
Chain F: 23 helices, 6 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 97-107 | 11 | |
| α-helix | 113-136 | 24 | |
| α-helix | 140-152 | 13 | |
| α-helix | 158-161 | 4 | |
| β-strand | 162-165 | 4 | 82 |
| α-helix | 214-233 | 20 | |
| α-helix | 244-258 | 15 | |
| β-strand | 259-261 | 3 | 82 |
| α-helix | 263-295 | 33 | |
| α-helix | 299-306 | 8 | |
| α-helix | 314-321 | 8 | |
| α-helix | 325-351 | 27 | |
| α-helix | 355-391 | 37 | |
| α-helix | 401-417 | 17 | |
| α-helix | 427-445 | 19 | |
| α-helix | 454-474 | 21 | |
| α-helix | 480-486 | 7 | |
| α-helix | 493-499 | 7 | |
| α-helix | 504 | 1 | |
| β-strand | 505-506 | 2 | 55 |
| β-strand | 510 | 1 | 83 |
| β-strand | 518 | 1 | 83 |
| α-helix | 519-522 | 4 | |
| β-strand | 524 | 1 | 47 |
| α-helix | 531-550 | 20 | |
| α-helix | 553-562 | 10 | |
| α-helix | 573-579 | 7 | |
| α-helix | 585-599 | 15 | |
| α-helix | 605-610 | 6 | |
Molecules and chains
| Molecule | Chains | Type | Length | Organism | UniProt |
|---|
| DNA-directed RNA polymerase subunit alpha | A, B | protein | 329 | Escherichia coli K-12 | P0A7Z4 (AlphaFold model) |
| DNA-directed RNA polymerase subunit beta | C | protein | 1342 | Escherichia coli K-12 | P0A8V2 (AlphaFold model) |
| DNA-directed RNA polymerase subunit beta' | D | protein | 1407 | Escherichia coli K-12 | P0A8T7 (AlphaFold model) |
| DNA-directed RNA polymerase subunit omega | E | protein | 91 | Escherichia coli K-12 | P0A800 (AlphaFold model) |
| RNA polymerase sigma factor RpoD | F | protein | 613 | Escherichia coli K-12 | P00579 |
| DNA (5'-d(p*cp*tp*cp*gp*tp*ap*gp*ap*gp*tp*cp*cp*gp*tp*gp*tp*cp*a)-3') | X | DNA | 64 | Escherichia coli K-12 | |
| DNA (5'-d(p*cp*tp*cp*gp*tp*ap*gp*ap*gp*tp*cp*cp*gp*tp*gp*tp*cp*a)-3') | Y | DNA | 64 | Escherichia coli K-12 | |
Sequence of entity 1 (A, B), FASTA
>7SZK_1 DNA-directed RNA polymerase subunit alpha (chains A, B)
MQGSVTEFLKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVE
IDGVLHEYSTKEGVQEDILEILLNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHDGD
VEIVKPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPV
ERIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVRQP
EVKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSL
TEIKDVLASRGLSLGMRLENWPPASIADE
Sequence of entity 2 (C), FASTA
>7SZK_2 DNA-directed RNA polymerase subunit beta (chains C)
MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQ
SYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQ
EVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYR
GSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQME
LVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKD
YIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRL
SALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGIL
SKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLS
LGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTR
ERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVT
DEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQV
VSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKR
GGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERG
DVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVS
RDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEK
LLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDL
SEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDE
LKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKIN
PIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAK
LREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLK
LGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLG
GKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMP
ESFNVLLKEIRSLGINIELEDE
Sequence of entity 3 (D), FASTA
>7SZK_3 DNA-directed RNA polymerase subunit beta' (chains D)
MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL
PSRIGLLLDMPLRDIERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKM
GAEAIQALLKSMDLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSG
LASLHARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKGLPYSIVNQALGKKA
ISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAE
VAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFN
SIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVL
GRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYG
RDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKL
SNVKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANW
DPHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKI
VDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPR
VADLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFE
GERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQM
LRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFI
SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRAAGEAPA
APQVTAEDASASLAELLNAGLGGSDNE
Sequence of entity 4 (E), FASTA
>7SZK_4 DNA-directed RNA polymerase subunit omega (chains E)
MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLIN
NQILDVRERQEQQEQEAAELQAVTAIAEGRR
Sequence of entity 5 (F), FASTA
>7SZK_5 RNA polymerase sigma factor RpoD (chains F)
MEQNPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAP
DADDLMLAENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIA
KRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVDPNAEEDLAPTATH
VGSELSQEDLDDDEDEDEEDGDDDSADDDNSIDPELAREKFAELRAQYVVTRDTIKAKGR
SHATAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLIMKLCVEQCKMPKK
NFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEETGLTIEQVKD
INRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFE
YRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTP
EELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESL
RAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRH
PSRSEVLRSFLDD
Sequence of entity 6 (X), FASTA
>7SZK_6 DNA (5'-D(P*CP*TP*CP*GP*TP*AP*GP*AP*GP*TP*CP*CP*GP*TP*GP*TP*CP*A)-3') (chains X)
ATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACACGGACTCTA
CGAG
Sequence of entity 7 (Y), FASTA
>7SZK_7 DNA (5'-D(P*CP*TP*CP*GP*TP*AP*GP*AP*GP*TP*CP*CP*GP*TP*GP*TP*CP*A)-3') (chains Y)
CTCGTAGAGTCCGTGTCAGTGGTGGCGCATTATAGGGAGTTATTCCGGCCTGACAAGAGG
AAAT
Ligands and cofactors
| ID | Name | Formula | Copies |
|---|
| MG | Magnesium ion | Mg | 1 |
| D9X | (2S,7R,7aR,13aP,16Z,18E,20S,21S,22R,23R,24R,25S,26R,27S,28E)-5,21,23-trihydroxy… | C63 H81 N5 O14 | 1 |
| ZN | Zinc ion | Zn | 2 |
Primary citation
Optimization of Benzoxazinorifamycins to Improve Mycobacterium tuberculosis RNA Polymerase Inhibition and Treatment of Tuberculosis. Rajeswaran, W., Ashkar, S.R., Lee, P.H. et al. ACS Infect Dis (2022) 8:1422-1438. DOI 10.1021/acsinfecdis.1c00636 · PubMed
Other PDB entries of the same protein (UniProt P0A7Z4 (AlphaFold model), which also has an AlphaFold model), best resolution first:
- 3K4G 2.05 Å, Crystal structure of E. coli RNA polymerase alpha subunit C-terminal domain
- 8FVW 2.1 Å, CryoEM structure of E.coli transcription elongation complex bound to ppGpp
- 8FVR 2.42 Å, CryoEM structure of E.coli transcription elongation complex
- 9ZP4 2.42 Å, E. coli RNA polymerase elongation complex containing the unnatural dZ:PTP base pair in a…
- 8HKC 2.49 Å, Cryo-EM structure of E. coli RNAP sigma32 complex
- 1BDF 2.5 Å, Structure of escherichia coli RNA polymerase alpha subunit N-terminal domain
- 6XL5 2.5 Å, Cryo-EM structure of EcmrR-RNAP-promoter open complex (EcmrR-RPo)
- 6XL9 2.5 Å, Cryo-EM structure of EcmrR-RNAP-promoter initial transcribing complex with 3-nt RNA…
- 12EC 2.6 Å, Half-translocated RNA polymerase elemental paused elongation complex, swiveled (ePEC…
- 8F1J 2.6 Å, SigN RNA polymerase early-melted intermediate bound to mismatch DNA fragment dhsU36mm2…
- 8PIB 2.6 Å, autoinhibited RfaH bound to E. coli transcription complex paused at ops site (encounter…
- 9MSF 2.6 Å, de novo SigN RNA polymerase transcription initiation intermediate with post-catalytic…
Browse structure collections
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