7ZUX: 40S ribosomal protein S0-A
Collided ribosome in a disome unit from S. cerevisiae. Determined by electron microscopy at 2.5 Å resolution. Released 22 Feb 2023.
- Method
- Electron microscopy
- Resolution
- 2.5 Å
- Organism
- Saccharomyces cerevisiae
- Chains
- 80
- Atoms
- 202,365
- Mol. weight
- 3082.35 kDa
- Ligands
- ZN, MG
- Released
- 22 Feb 2023
Explore 7ZUX in 3D
Show helices and sheets
RCSB PDB
PDBe
Secondary structure: helices and β-sheets
7ZUX contains 480 α-helices and 514 β-strands across 74 chains. Residue ranges use author residue numbering, as in the PDB file, from PDBe. To see them in 3D, choose the Cartoon representation with Secondary structure coloring: helices, sheets and coils get different colors.
Chain Da: 3 helices, 5 β-strands
| Element | Residues | Length | Sheet |
|---|
| β-strand | 21-22 | 2 | 33 |
| β-strand | 29-30 | 2 | 33 |
| β-strand | 38-43 | 6 | 34 |
| α-helix | 50-54 | 5 | |
| β-strand | 57 | 1 | 129 |
| β-strand | 66-71 | 6 | 34 |
| α-helix | 75-80 | 6 | |
| α-helix | 91-93 | 3 | |
Chain DA: 9 helices, 8 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 9-10 | 2 | |
| α-helix | 11-19 | 9 | |
| β-strand | 24 | 1 | 31 |
| β-strand | 37-41 | 5 | 31 |
| β-strand | 45-48 | 4 | 31 |
| α-helix | 50-66 | 17 | |
| α-helix | 70-72 | 3 | |
| β-strand | 73-76 | 4 | 32 |
| α-helix | 80-82 | 3 | |
| α-helix | 83-91 | 9 | |
| β-strand | 97-98 | 2 | 32 |
| β-strand | 120-123 | 4 | 32 |
| α-helix | 130-136 | 7 | |
| β-strand | 143-147 | 5 | 32 |
| β-strand | 159-161 | 3 | 32 |
| α-helix | 167-185 | 19 | |
| α-helix | 199-201 | 3 | |
Chain Db: 3 helices, 6 β-strands
| Element | Residues | Length | Sheet |
|---|
| β-strand | 6 | 1 | 12 |
| α-helix | 12-17 | 6 | |
| β-strand | 32-36 | 5 | 41 |
| β-strand | 44-47 | 4 | 41 |
| β-strand | 64-65 | 2 | 42 |
| α-helix | 71 | 1 | |
| β-strand | 72-73 | 2 | 42 |
| α-helix | 74 | 1 | |
| β-strand | 78-81 | 4 | 41 |
Chain DB: 6 helices, 15 β-strands
| Element | Residues | Length | Sheet |
|---|
| β-strand | 27-29 | 3 | 37 |
| β-strand | 33 | 1 | 38 |
| β-strand | 42 | 1 | 38 |
| β-strand | 47-49 | 3 | 37 |
| β-strand | 65-69 | 5 | 39 |
| α-helix | 70-74 | 5 | |
| β-strand | 83-88 | 6 | 39 |
| β-strand | 97 | 1 | 38 |
| β-strand | 98-104 | 7 | 39 |
| α-helix | 107-113 | 7 | |
| β-strand | 120-122 | 3 | 40 |
| β-strand | 125 | 1 | 39 |
| β-strand | 128 | 1 | 39 |
| β-strand | 134-137 | 4 | 39 |
| β-strand | 140-142 | 3 | 40 |
| α-helix | 160-176 | 17 | |
| α-helix | 183-188 | 6 | |
| α-helix | 192-201 | 10 | |
| β-strand | 208 | 1 | 40 |
| β-strand | 215-219 | 5 | 39 |
| α-helix | 228-230 | 3 | |
Chain Dc: 1 helix, 4 β-strands
| Element | Residues | Length | Sheet |
|---|
| β-strand | 8-19 | 12 | 53 |
| β-strand | 25-32 | 8 | 53 |
| β-strand | 39-44 | 6 | 53 |
| β-strand | 53-56 | 4 | 53 |
| α-helix | 62-65 | 4 | |
Chain DC: 12 helices, 10 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 40-47 | 8 | |
| α-helix | 53-58 | 6 | |
| α-helix | 67-72 | 6 | |
| β-strand | 79-89 | 11 | 50 |
| β-strand | 94-106 | 13 | 50 |
| β-strand | 110-118 | 9 | 50 |
| α-helix | 121-134 | 14 | |
| β-strand | 137-138 | 2 | 50 |
| β-strand | 142 | 1 | 51 |
| β-strand | 153 | 1 | 51 |
| β-strand | 158-162 | 5 | 52 |
| β-strand | 165-171 | 7 | 52 |
| β-strand | 178 | 1 | 52 |
| α-helix | 182-189 | 8 | |
| β-strand | 196-201 | 6 | 52 |
| α-helix | 211-219 | 9 | |
| α-helix | 220-222 | 3 | |
| α-helix | 227-229 | 3 | |
| α-helix | 232-233 | 2 | |
| α-helix | 236-238 | 3 | |
| α-helix | 239-242 | 4 | |
| α-helix | 244-246 | 3 | |
Chain Dd: 3 helices, 3 β-strands
| Element | Residues | Length | Sheet |
|---|
| β-strand | 30-31 | 2 | 59 |
| α-helix | 33-35 | 3 | |
| β-strand | 38-39 | 2 | 59 |
| α-helix | 40-45 | 6 | |
| α-helix | 47-50 | 4 | |
| β-strand | 53 | 1 | 2 |
Chain DD: 10 helices, 9 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 7-27 | 21 | |
| α-helix | 30-32 | 3 | |
| β-strand | 36-42 | 7 | 55 |
| β-strand | 45-52 | 8 | 55 |
| α-helix | 55-59 | 5 | |
| α-helix | 61-63 | 3 | |
| α-helix | 64-76 | 13 | |
| β-strand | 84-90 | 7 | 55 |
| α-helix | 91 | 1 | |
| α-helix | 100-110 | 11 | |
| α-helix | 115-128 | 14 | |
| β-strand | 131-140 | 10 | 56 |
| β-strand | 150-155 | 6 | 56 |
| α-helix | 163-166 | 4 | |
| β-strand | 168-176 | 9 | 56 |
| β-strand | 181-190 | 10 | 56 |
| α-helix | 192-194 | 3 | |
| β-strand | 206-208 | 3 | 57 |
| β-strand | 221-222 | 2 | 58 |
66 more chain groups are not listed. Open the entry in the viewer and use the sequence panel to see them.
Molecules and chains
| Molecule | Chains | Type | Length | Organism | UniProt |
|---|
| 18S ribosomal RNA | 2 | RNA | 1800 | Saccharomyces cerevisiae | |
| 5.8S ribosomal RNA | 3 | RNA | 158 | Saccharomyces cerevisiae | |
| 5S ribosomal RNA | 4 | RNA | 121 | Saccharomyces cerevisiae | |
| 25S ribosomal RNA | 5 | RNA | 3396 | Saccharomyces cerevisiae | |
| A/P tRNA | 6 | RNA | 76 | Saccharomyces cerevisiae | |
| P/E tRNA | 7 | RNA | 77 | Saccharomyces cerevisiae | |
| 40S ribosomal protein S0-A | DA | protein | 206 | Saccharomyces cerevisiae | P32905 (AlphaFold model) |
| 40S ribosomal protein S1-A | DB | protein | 255 | Saccharomyces cerevisiae | P33442 (AlphaFold model) |
| 40S ribosomal protein S2 | DC | protein | 216 | Saccharomyces cerevisiae | P25443 (AlphaFold model) |
| 40S ribosomal protein S3 | DD | protein | 222 | Saccharomyces cerevisiae | P05750 (AlphaFold model) |
| 40S ribosomal protein S4-A | DE | protein | 258 | Saccharomyces cerevisiae | P0CX35 |
| 40S ribosomal protein S5 | DF | protein | 206 | Saccharomyces cerevisiae | P26783 |
68 more molecules are not listed.
Sequence of entity 1 (2), FASTA
>7ZUX_1 18S ribosomal RNA (chains 2)
UAUCUGGUUGAUCCUGCCAGUAGUCAUAUGCUUGUCUCAAAGAUUAAGCCAUGCAUGUCU
AAGUAUAAGCAAUUUAUACAGUGAAACUGCGAAUGGCUCAUUAAAUCAGUUAUCGUUUAU
UUGAUAGUUCCUUUACUACAUGGUAUAACUGUGGUAAUUCUAGAGCUAAUACAUGCUUAA
AAUCUCGACCCUUUGGAAGAGAUGUAUUUAUUAGAUAAAAAAUCAAUGUCUUCGGACUCU
UUGAUGAUUCAUAAUAACUUUUCGAAUCGCAUGGCCUUGUGCUGGCGAUGGUUCAUUCAA
AUUUCUGCCCUAUCAACUUUCGAUGGUAGGAUAGUGGCCUACCAUGGUUUCAACGGGUAA
CGGGGAAUAAGGGUUCGAUUCCGGAGAGGGAGCCUGAGAAACGGCUACCACAUCCAAGGA
AGGCAGCAGGCGCGCAAAUUACCCAAUCCUAAUUCAGGGAGGUAGUGACAAUAAAUAACG
AUACAGGGCCCAUUCGGGUCUUGUAAUUGGAAUGAGUACAAUGUAAAUACCUUAACGAGG
AACAAUUGGAGGGCAAGUCUGGUGCCAGCAGCCGCGGUAAUUCCAGCUCCAAUAGCGUAU
AUUAAAGUUGUUGCAGUUAAAAAGCUCGUAGUUGAACUUUGGGCCCGGUUGGCCGGUCCG
AUUUUUUCGUGUACUGGAUUUCCAACGGGGCCUUUCCUUCUGGCUAACCUUGAGUCCUUG
UGGCUCUUGGCGAACCAGGACUUUUACUUUGAAAAAAUUAGAGUGUUCAAAGCAGGCGUA
UUGCUCGAAUAUAUUAGCAUGGAAUAAUAGAAUAGGACGUUUGGUUCUAUUUUGUUGGUU
UCUAGGACCAUCGUAAUGAUUAAUAGGGACGGUCGGGGGCAUCAGUAUUCAAUUGUCAGA
GGUGAAAUUCUUGGAUUUAUUGAAGACUAACUACUGCGAAAGCAUUUGCCAAGGACGUUU
UCAUUAAUCAAGAACGAAAGUUAGGGGAUCGAAGAUGAUCAGAUACCGUCGUAGUCUUAA
CCAUAAACUAUGCCGACUAGGGAUCGGGUGGUGUUUUUUUAAUGACCCACUCGGCACCUU
ACGAGAAAUCAAAGUCUUUGGGUUCUGGGGGGAGUAUGGUCGCAAGGCUGAAACUUAAAG
GAAUUGACGGAAGGGCACCACCAGGAGUGGAGCCUGCGGCUUAAUUUGACUCAACACGGG
GAAACUCACCAGGUCCAGACACAAUAAGGAUUGACAGAUUGAGAGCUCUUUCUUGAUUUU
GUGGGUGGUGGUGCAUGGCCGUUCUUAGUUGGUGGAGUGAUUUGUCUGCUUAAUUGCGAU
AACGAACGAGACCUUAACCUACUAAAUAGUGGUGCUAGCAUUUGCUGGUUAUCCACUUCU
UAGAGGGACUAUCGGUUUCAAGCCGAUGGAAGUUUGAGGCAAUAACAGGUCUGUGAUGCC
CUUAGACGUUCUGGGCCGCACGCGCGCUACACUGACGGAGCCAGCGAGUCUAACCUUGGC
CGAGAGGUCUUGGUAAUCUUGUGAAACUCCGUCGUGCUGGGGAUAGAGCAUUGUAAUUAU
UGCUCUUCAACGAGGAAUUCCUAGUAAGCGCAAGUCAUCAGCUUGCGUUGAUUACGUCCC
UGCCCUUUGUACACACCGCCCGUCGCUAGUACCGAUUGAAUGGCUUAGUGAGGCCUCAGG
AUCUGCUUAGAGAAGGGGGCAACUCCAUCUCAGAGCGGAGAAUUUGGACAAACUUGGUCA
UUUAGAGGAACUAAAAGUCGUAACAAGGUUUCCGUAGGUGAACCUGCGGAAGGAUCAUUA
Sequence of entity 2 (3), FASTA
>7ZUX_2 5.8S ribosomal RNA (chains 3)
AAACUUUCAACAACGGAUCUCUUGGUUCUCGCAUCGAUGAAGAACGCAGCGAAAUGCGAU
ACGUAAUGUGAAUUGCAGAAUUCCGUGAAUCAUCGAAUCUUUGAACGCACAUUGCGCCCC
UUGGUAUUCCAGGGGGCAUGCCUGUUUGAGCGUCAUUU
Sequence of entity 3 (4), FASTA
>7ZUX_3 5S ribosomal RNA (chains 4)
GGUUGCGGCCAUAUCUACCAGAAAGCACCGUUUCCCGUCCGAUCAACUGUAGUUAAGCUG
GUAAGAGCCUGACCGAGUAGUGUAGUGGGUGACCAUACGCGAAACUCAGGUGCUGCAAUC
U
Sequence of entity 4 (5), FASTA
>7ZUX_4 25S ribosomal RNA (chains 5)
GUUUGACCUCAAAUCAGGUAGGAGUACCCGCUGAACUUAAGCAUAUCAAUAAGCGGAGGA
AAAGAAACCAACCGGGAUUGCCUUAGUAACGGCGAGUGAAGCGGCAAAAGCUCAAAUUUG
AAAUCUGGUACCUUCGGUGCCCGAGUUGUAAUUUGGAGAGGGCAACUUUGGGGCCGUUCC
UUGUCUAUGUUCCUUGGAACAGGACGUCAUAGAGGGUGAGAAUCCCGUGUGGCGAGGAGU
GCGGUUCUUUGUAAAGUGCCUUCGAAGAGUCGAGUUGUUUGGGAAUGCAGCUCUAAGUGG
GUGGUAAAUUCCAUCUAAAGCUAAAUAUUGGCGAGAGACCGAUAGCGAACAAGUACAGUG
AUGGAAAGAUGAAAAGAACUUUGAAAAGAGAGUGAAAAAGUACGUGAAAUUGUUGAAAGG
GAAGGGCAUUUGAUCAGACAUGGUGUUUUGUGCCCUCUGCUCCUUGUGGGUAGGGGAAUC
UCGCAUUUCACUGGGCCAGCAUCAGUUUUGGUGGCAGGAUAAAUCCAUAGGAAUGUAGCU
UGCCUCGGUAAGUAUUAUAGCCUGUGGGAAUACUGCCAGCUGGGACUGAGGACUGCGACG
UAAGUCAAGGAUGCUGGCAUAAUGGUUAUAUGCCGCCCGUCUUGAAACACGGACCAAGGA
GUCUAACGUCUAUGCGAGUGUUUGGGUGUAAAACCCAUACGCGUAAUGAAAGUGAACGUA
GGUUGGGGCCUCGCAAGAGGUGCACAAUCGACCGAUCCUGAUGUCUUCGGAUGGAUUUGA
GUAAGAGCAUAGCUGUUGGGACCCGAAAGAUGGUGAACUAUGCCUGAAUAGGGUGAAGCC
AGAGGAAACUCUGGUGGAGGCUCGUAGCGGUUCUGACGUGCAAAUCGAUCGUCGAAUUUG
GGUAUAGGGGCGAAAGACUAAUCGAACCAUCUAGUAGCUGGUUCCUGCCGAAGUUUCCCU
CAGGAUAGCAGAAGCUCGUAUCAGUUUUAUGAGGUAAAGCGAAUGAUUAGAGGUUCCGGG
GUCGAAAUGACCUUGACCUAUUCUCAAACUUUAAAUAUGUAAGAAGUCCUUGUUACUUAA
UUGAACGUGGACAUUUGAAUGAAGAGCUUUUAGUGGGCCAUUUUUGGUAAGCAGAACUGG
CGAUGCGGGAUGAACCGAACGUAGAGUUAAGGUGCCGGAAUACACGCUCAUCAGACACCA
CAAAAGGUGUUAGUUCAUCUAGACAGCCGGACGGUGGCCAUGGAAGUCGGAAUCCGCUAA
GGAGUGUGUAACAACUCACCGGCCGAAUGAACUAGCCCUGAAAAUGGAUGGCGCUCAAGC
GUGUUACCUAUACUCUACCGUCAGGGUUGAUAUGAUGCCCUGACGAGUAGGCAGGCGUGG
AGGUCAGUGACGAAGCCUAGACCGUAAGGUCGGGUCGAACGGCCUCUAGUGCAGAUCUUG
GUGGUAGUAGCAAAUAUUCAAAUGAGAACUUUGAAGACUGAAGUGGGGAAAGGUUCCACG
UCAACAGCAGUUGGACGUGGGUUAGUCGAUCCUAAGAGAUGGGGAAGCUCCGUUUCAAAG
GCCUGAUUUUAUGCAGGCCACCAUCGAAAGGGAAUCCGGUUAAGAUUCCGGAACCUGGAU
AUGGAUUCUUCACGGUAACGUAACUGAAUGUGGAGACGUCGGCGCGAGCCCUGGGAGGAG
UUAUCUUUUCUUCUUAACAGCUUAUCACCCCGGAAUUGGUUUAUCCGGAGAUGGGGUCUU
AUGGCUGGAAGAGGCCAGCACCUUUGCUGGCUCCGGUGCGCUUGUGACGGCCCGUGAAAA
UCCACAGGAAGGAAUAGUUUUCAUGCCAGGUCGUACUGAUAACCGCAGCAGGUCUCCAAG
GUGAACAGCCUCUAGUUGAUAGAAUAAUGUAGAUAAGGGAAGUCGGCAAAAUAGAUCCGU
AACUUCGGGAUAAGGAUUGGCUCUAAGGGUCGGGUAGUGAGGGCCUUGGUCAGACGCAGC
GGGCGUGCUUGUGGACUGCUUGGUGGGGCUUGCUCUGCUAGGCGGACUACUUGCGUGCCU
UGUUGUAGACGGCCUUGGUAGGUCUCUUGUAGACCGUCGCUUGCUACAAUUAACGAUCAA
CUUAGAACUGGUACGGACAAGGGGAAUCUGACUGUCUAAUUAAAACAUAGCAUUGCGAUG
GUCAGAAAGUGAUGUUGACGCAAUGUGAUUUCUGCCCAGUGCUCUGAAUGUCAAAGUGAA
GAAAUUCAACCAAGCGCGGGUAAACGGCGGGAGUAACUAUGACUCUCUUAAGGUAGCCAA
AUGCCUCGUCAUCUAAUUAGUGACGCGCAUGAAUGGAUUAACGAGAUUCCCACUGUCCCU
AUCUACUAUCUAGCGAAACCACAGCCAAGGGAACGGGCUUGGCAGAAUCAGCGGGGAAAG
AAGACCCUGUUGAGCUUGACUCUAGUUUGACAUUGUGAAGAGACAUAGAGGGUGUAGAAU
AAGUGGGAGCUUCGGCGCCAGUGAAAUACCACUACCUUUAUAGUUUCUUUACUUAUUCAA
UGAAGCGGAGCUGGAAUUCAUUUUCCACGUUCUAGCAUUCAAGGUCCCAUUCGGGGCUGA
UCCGGGUUGAAGACAUUGUCAGGUGGGGAGUUUGGCUGGGGCGGCACAUCUGUUAAACGA
UAACGCAGAUGUCCUAAGGGGGGCUCAUGGAGAACAGAAAUCUCCAGUAGAACAAAAGGG
UAAAAGCCCCCUUGAUUUUGAUUUUCAGUGUGAAUACAAACCAUGAAAGUGUGGCCUAUC
GAUCCUUUAGUCCCUCGGAAUUUGAGGCUAGAGGUGCCAGAAAAGUUACCACAGGGAUAA
CUGGCUUGUGGCAGUCAAGCGUUCAUAGCGACAUUGCUUUUUGAUUCUUCGAUGUCGGCU
CUUCCUAUCAUACCGAAGCAGAAUUCGGUAAGCGUUGGAUUGUUCACCCACUAAUAGGGA
ACGUGAGCUGGGUUUAGACCGUCGUGAGACAGGUUAGUUUUACCCUACUGAUGAAUGUUA
CCGCAAUAGUAAUUGAACUUAGUACGAGAGGAACAGUUCAUUCGGAUAAUUGGUUUUUGC
GGCUGUCUGAUCAGGCAUUGCCGCGAAGCUACCAUCCGCUGGAUUAUGGCUGAACGCCUC
UAAGUCAGAAUCCAUGCUAGAACGCGGUGAUUUCUUUGCUCCACACAAUAUAGAUGGAUA
CGAAUAAGGCGUCCUUGUGGCGUCGCUGAACCAUAGCAGGCUAGCAACGGUGCACUUGGC
GGAAAGGCCUUGGGUGCUUGCUGGCGAAUUGCAAUGUCAUUUUGCGUGGGGAUAAAUCAU
UUGUAUACGACUUAGAUGUACAACGGGGUAUUGUAAGCAGUAGAGUAGCCUUGUUGUUAC
GAUCUGCUGAGAUUAAGCCUUUGUUGUCUGAUUUGU
Sequence of entity 5 (6), FASTA
>7ZUX_5 A/P tRNA (chains 6)
GCCCGGAUAGCUCAGUCGGUAGAGCAGGGGAUUAGGAAUCCCCGUGUCCUUGGUUCGAUU
CCGAGUCCGGGCACCA
Sequence of entity 6 (7), FASTA
>7ZUX_6 P/E tRNA (chains 7)
CGCGGGGUGGAGCAGCCUGGUAGCUCGUCGGGCUCAUAACCCGAAGGUCGUCGGUUCAAA
UCCGGCCCCCGCAACCA
Sequence of entity 7 (DA), FASTA
>7ZUX_7 40S ribosomal protein S0-A (chains DA)
SLPATFDLTPEDAQLLLAANTHLGARNVQVHQEPYVFNARPDGVHVINVGKTWEKLVLAA
RIIAAIPNPEDVVAISSRTFGQRAVLKFAAHTGATPIAGRFTPGSFTNYITRSFKEPRLV
IVTDPRSDAQAIKEASYVNIPVIALTDLDSPSEFVDVAIPCNNRGKHSIGLIWYLLAREV
LRLRGALVDRTQPWSIMPDLYFYRDP
Sequence of entity 8 (DB), FASTA
>7ZUX_8 40S ribosomal protein S1-A (chains DB)
MAVGKNKRLSKGKKGQKKRVVDPFTRKEWFDIKAPSTFENRNVGKTLVNKSTGLKSASDA
LKGRVVEVCLADLQGSEDHSFRKIKLRVDEVQGKNLLTNFHGMDFTTDKLRSMVRKWQTL
IEANVTVKTSDDYVLRIFAIAFTRKQANQVKRHSYAQSSHIRAIRKVISEILTKEVQGST
LAQLTSKLIPEVINKEIENATKDIFPLQNIHVRKVKLLKQPKFDVGALMALHGEGSGEEK
GKKVTGFKDEVLETV
Sequence of entity 9 (DC), FASTA
>7ZUX_9 40S ribosomal protein S2 (chains DC)
GWVPVTKLGRLVKAGKITTIEEIFLHSLPVKEFQIIDTLLPGLQDEVMNIKPVQKQTRAG
QRTRFKAVVVVGDSNGHVGLGIKTAKEVAGAIRAGIIIAKLSVIPIRRGYWGTNLGQPHS
LATKTTGKCGSVTVRLIPAPRGSGIVASPAVKKLLQLAGVEDVYTQSNGKTRTLENTLKA
AFVAIGNTYGFLTPNLWAEQPLPVSPLDIYSDEASA
Sequence of entity 10 (DD), FASTA
>7ZUX_10 40S ribosomal protein S3 (chains DD)
LISKKRKLVADGVFYAELNEFFTRELAEEGYSGVEVRVTPTKTEVIIRATRTQDVLGENG
RRINELTLLVQKRFKYAPGTIVLYAERVQDRGLSAVAQAESMKFKLLNGLAIRRAAYGVV
RYVMESGAKGCEVVVSGKLRAARAKAMKFADGFLIHSGQPVNDFIDTATRHVLMRQGVLG
IKVKIMRDPAKSRTGPKALPDAVTIIEPKEEEPILAPSVKDY
Sequence of entity 11 (DE), FASTA
>7ZUX_11 40S ribosomal protein S4-A (chains DE)
ARGPKKHLKRLAAPHHWLLDKLSGCYAPRPSAGPHKLRESLPLIVFLRNRLKYALNGREV
KAILMQRHVKVDGKVRTDTTYPAGFMDVITLDATNENFRLVYDVKGRFAVHRITDEEASY
KLGKVKKVQLGKKGVPYVVTHDGRTIRYPDPNIKVNDTVKIDLASGKITDFIKFDAGKLV
YVTGGRNLGRIGTIVHKERHDGGFDLVHIKDSLDNTFVTRLNNVFVIGEQGKPYISLPKG
KGIKLSIAEERDRRRAQQ
Sequence of entity 12 (DF), FASTA
>7ZUX_12 40S ribosomal protein S5 (chains DF)
FTPVVLATPIPEEVQQAQTEIKLFNKWSFEEVEVKDASLVDYVQVRQPIFVAHTAGRYAN
KRFRKAQCPIIERLTNSLMMNGRNNGKKLKAVRIIKHTLDIINVLTDQNPIQVVVDAITN
TGPREDTTRVGGGGAARRQAVDVSPLRRVNQAIALLTIGAREAAFRNIKTIAETLAEELI
NAAKGSSTSYAIKKKDELERVAKSNR
Ligands and cofactors
| ID | Name | Formula | Copies |
|---|
| ZN | Zinc ion | Zn | 7 |
| MG | Magnesium ion | Mg | 86 |
Primary citation
Structural basis for clearing of ribosome collisions by the RQT complex. Best, K., Ikeuchi, K., Kater, L. et al. Nat Commun (2023) 14:921-921. DOI 10.1038/s41467-023-36230-8 · PubMed
Other PDB entries of the same protein (UniProt P32905 (AlphaFold model), which also has an AlphaFold model), best resolution first:
- 9PN5 1.75 Å, Composite map of hypomethylated 80S ribosome treated with hygromycin B
- 8CCS 1.97 Å, 80S S. cerevisiae ribosome with ligands in hybrid-1 pre-translocation (PRE-H1) complex
- 8CDR 2.04 Å, Translocation intermediate 2 (TI-2) of 80S S. cerevisiae ribosome with ligands and eEF2…
- 8CEH 2.05 Å, Translocation intermediate 4 (TI-4) of 80S S. cerevisiae ribosome with ligands and eEF2…
- 8EVT 2.2 Å, Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome…
- 8T2Y 2.2 Å, Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, and A-site tRNA,…
- 8CGN 2.28 Å, Non-rotated 80S S. cerevisiae ribosome with ligands
- 8ZHC 2.3 Å, pre-frameshift complex of yeast 80S ribosome with eRF1 and mRNA of WNV
- 8EVP 2.38 Å, Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome…
- 9DP7 2.38 Å, Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome…
- 7ZW0 2.4 Å, FAP-80S Complex - Rotated state
- 8BN3 2.4 Å, Yeast 80S, ES7s delta, eIF5A, Stm1 containing
Browse structure collections
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