8CSR: 28S ribosomal protein S34, mitochondrial
Human mitochondrial small subunit assembly intermediate (State C). Determined by electron microscopy at 2.54 Å resolution. Released 14 Dec 2022.
- Method
- Electron microscopy
- Resolution
- 2.54 Å
- Organism
- Homo sapiens
- Chains
- 34
- Atoms
- 69,868
- Mol. weight
- 1304.21 kDa
- Ligands
- GDP, ATP, FES, ZN
- Released
- 14 Dec 2022
Explore 8CSR in 3D
Show helices and sheets
RCSB PDB
PDBe
Secondary structure: helices and β-sheets
8CSR contains 373 α-helices and 206 β-strands across 33 chains. Residue ranges use author residue numbering, as in the PDB file, from PDBe. To see them in 3D, choose the Cartoon representation with Secondary structure coloring: helices, sheets and coils get different colors.
Chain 0: 19 helices, 12 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 10-25 | 16 | |
| α-helix | 27-29 | 3 | |
| α-helix | 30-33 | 4 | |
| β-strand | 37 | 1 | 1 |
| β-strand | 42 | 1 | 1 |
| α-helix | 48 | 1 | |
| β-strand | 49 | 1 | 1 |
| α-helix | 50-51 | 2 | |
| α-helix | 52-54 | 3 | |
| α-helix | 55-60 | 6 | |
| β-strand | 62 | 1 | 2 |
| α-helix | 64-68 | 5 | |
| α-helix | 72-75 | 4 | |
| β-strand | 79-82 | 4 | 2 |
| α-helix | 83-88 | 6 | |
| β-strand | 94-102 | 9 | 2 |
| β-strand | 112-120 | 9 | 2 |
| β-strand | 123-124 | 2 | 2 |
| α-helix | 125 | 1 | |
| β-strand | 129-130 | 2 | 2 |
| α-helix | 131 | 1 | |
| β-strand | 139-141 | 3 | 2 |
| α-helix | 142-143 | 2 | |
| α-helix | 144-146 | 3 | |
| α-helix | 147-151 | 5 | |
| β-strand | 163-165 | 3 | 3 |
| α-helix | 166-167 | 2 | |
| α-helix | 168-180 | 13 | |
| α-helix | 187-189 | 3 | |
| β-strand | 190-192 | 3 | 3 |
| α-helix | 213-215 | 3 | |
Chain 1: 17 helices, 6 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 56-59 | 4 | |
| α-helix | 66-69 | 4 | |
| β-strand | 86 | 1 | 5 |
| α-helix | 89-91 | 3 | |
| α-helix | 96-98 | 3 | |
| α-helix | 103-107 | 5 | |
| α-helix | 116-125 | 10 | |
| α-helix | 126-129 | 4 | |
| α-helix | 140-146 | 7 | |
| β-strand | 149-157 | 9 | 6 |
| β-strand | 162 | 1 | 7 |
| α-helix | 166-169 | 4 | |
| β-strand | 171-176 | 6 | 6 |
| α-helix | 177-179 | 3 | |
| α-helix | 184-194 | 11 | |
| α-helix | 195-197 | 3 | |
| β-strand | 198-199 | 2 | 6 |
| β-strand | 204-209 | 6 | 6 |
| α-helix | 215-233 | 19 | |
| α-helix | 239-241 | 3 | |
| α-helix | 257-272 | 16 | |
| α-helix | 287-301 | 15 | |
| α-helix | 306-320 | 15 | |
Chain 3: 1 helix, 0 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 154-180 | 27 | |
Chain 4: 41 helices, 3 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 59-60 | 2 | |
| β-strand | 61-65 | 5 | 12 |
| α-helix | 69-77 | 9 | |
| α-helix | 79-81 | 3 | |
| α-helix | 100-123 | 24 | |
| α-helix | 125-127 | 3 | |
| β-strand | 134 | 1 | 7 |
| α-helix | 138-140 | 3 | |
| α-helix | 142-144 | 3 | |
| α-helix | 154-163 | 10 | |
| α-helix | 166-178 | 13 | |
| α-helix | 181-184 | 4 | |
| α-helix | 185-198 | 14 | |
| α-helix | 236-239 | 4 | |
| α-helix | 243-250 | 8 | |
| α-helix | 256-268 | 13 | |
| α-helix | 272-284 | 13 | |
| α-helix | 291-303 | 13 | |
| α-helix | 309-325 | 17 | |
| α-helix | 328-330 | 3 | |
| α-helix | 332-342 | 11 | |
| α-helix | 343-349 | 7 | |
| α-helix | 350-362 | 13 | |
| α-helix | 369-379 | 11 | |
| α-helix | 392-400 | 9 | |
| α-helix | 410-414 | 5 | |
| α-helix | 415-426 | 12 | |
| α-helix | 429-440 | 12 | |
| β-strand | 441 | 1 | 13 |
| α-helix | 444-448 | 5 | |
| α-helix | 451-468 | 18 | |
| α-helix | 471-481 | 11 | |
| α-helix | 487-489 | 3 | |
| α-helix | 490-502 | 13 | |
| α-helix | 506-508 | 3 | |
| α-helix | 509-518 | 10 | |
| α-helix | 525-536 | 12 | |
| α-helix | 542-560 | 19 | |
| α-helix | 573-586 | 14 | |
| α-helix | 589-601 | 13 | |
| α-helix | 608-621 | 14 | |
| α-helix | 624-636 | 13 | |
| α-helix | 642-652 | 11 | |
| α-helix | 657-666 | 10 | |
Chain 5: 20 helices, 7 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 12-17 | 6 | |
| α-helix | 18-24 | 7 | |
| α-helix | 41-50 | 10 | |
| β-strand | 58-62 | 5 | 15 |
| α-helix | 68-75 | 8 | |
| β-strand | 80-85 | 6 | 15 |
| α-helix | 88-90 | 3 | |
| α-helix | 91-100 | 10 | |
| β-strand | 105-109 | 5 | 15 |
| α-helix | 123-125 | 3 | |
| β-strand | 136-140 | 5 | 15 |
| α-helix | 144-160 | 17 | |
| α-helix | 163-166 | 4 | |
| β-strand | 171-177 | 7 | 15 |
| α-helix | 178-184 | 7 | |
| α-helix | 186-187 | 2 | |
| α-helix | 195-201 | 7 | |
| β-strand | 204-212 | 9 | 15 |
| α-helix | 214-216 | 3 | |
| β-strand | 225-232 | 8 | 15 |
| α-helix | 242-253 | 12 | |
| α-helix | 260-264 | 5 | |
| α-helix | 265-267 | 3 | |
| α-helix | 273-284 | 12 | |
| α-helix | 292-294 | 3 | |
| α-helix | 297-312 | 16 | |
| α-helix | 322-327 | 6 | |
Chain 6: 6 helices, 3 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 44-49 | 6 | |
| α-helix | 91-108 | 18 | |
| α-helix | 115-120 | 6 | |
| β-strand | 124-129 | 6 | 17 |
| β-strand | 136-141 | 6 | 17 |
| α-helix | 146-169 | 24 | |
| α-helix | 177-178 | 2 | |
| β-strand | 179-184 | 6 | 17 |
| α-helix | 187-199 | 13 | |
Chain 7: 16 helices, 16 β-strands
| Element | Residues | Length | Sheet |
|---|
| β-strand | 36-37 | 2 | 25 |
| α-helix | 43-46 | 4 | |
| β-strand | 61 | 1 | 26 |
| α-helix | 65-74 | 10 | |
| α-helix | 81-95 | 15 | |
| α-helix | 97-100 | 4 | |
| α-helix | 103-117 | 15 | |
| α-helix | 132-139 | 8 | |
| α-helix | 152-180 | 29 | |
| β-strand | 189-192 | 4 | 26 |
| α-helix | 198-207 | 10 | |
| β-strand | 214-217 | 4 | 26 |
| α-helix | 221-231 | 11 | |
| β-strand | 245-248 | 4 | 26 |
| β-strand | 259-265 | 7 | 26 |
| α-helix | 268-270 | 3 | |
| α-helix | 274-286 | 13 | |
| β-strand | 288-297 | 10 | 26 |
| α-helix | 300-314 | 15 | |
| β-strand | 327-331 | 5 | 26 |
| α-helix | 338-339 | 2 | |
| β-strand | 349-353 | 5 | 26 |
| α-helix | 355-357 | 3 | |
| β-strand | 365-376 | 12 | 26 |
| β-strand | 387-388 | 2 | 27 |
| β-strand | 393-395 | 3 | 27 |
| β-strand | 398-404 | 7 | 27 |
| β-strand | 410-416 | 7 | 27 |
| α-helix | 417-420 | 4 | |
| α-helix | 422-430 | 9 | |
| β-strand | 436 | 1 | 27 |
| β-strand | 439-440 | 2 | 25 |
Chain 8: 19 helices, 12 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 57-58 | 2 | |
| β-strand | 63-67 | 5 | 28 |
| α-helix | 87-98 | 12 | |
| α-helix | 102-107 | 6 | |
| α-helix | 117-138 | 22 | |
| α-helix | 140-144 | 5 | |
| β-strand | 146-151 | 6 | 28 |
| α-helix | 155-162 | 8 | |
| α-helix | 168-188 | 21 | |
| β-strand | 192-198 | 7 | 29 |
| α-helix | 204-218 | 15 | |
| β-strand | 225-232 | 8 | 29 |
| β-strand | 235-240 | 6 | 29 |
| α-helix | 242-250 | 9 | |
| α-helix | 252-255 | 4 | |
| β-strand | 257-262 | 6 | 29 |
| α-helix | 272-277 | 6 | |
| α-helix | 278-287 | 10 | |
| β-strand | 296-297 | 2 | 28 |
| β-strand | 298 | 1 | 30 |
| α-helix | 299 | 1 | |
| β-strand | 305 | 1 | 30 |
| α-helix | 309-311 | 3 | |
| α-helix | 312-318 | 7 | |
| α-helix | 319-321 | 3 | |
| β-strand | 324-325 | 2 | 29 |
| α-helix | 326-334 | 9 | |
| β-strand | 344-347 | 4 | 28 |
| α-helix | 353-361 | 9 | |
| α-helix | 363-367 | 5 | |
| β-strand | 369-371 | 3 | 28 |
25 more chain groups are not listed. Open the entry in the viewer and use the sequence panel to see them.
Molecules and chains
| Molecule | Chains | Type | Length | Organism | UniProt |
|---|
| 28S ribosomal protein S34, mitochondrial | 0 | protein | 218 | Homo sapiens | P82930 (AlphaFold model) |
| 28S ribosomal protein S35, mitochondrial | 1 | protein | 323 | Homo sapiens | P82673 (AlphaFold model) |
| Aurora kinase A-interacting protein | 3 | protein | 199 | Homo sapiens | Q9NWT8 (AlphaFold model) |
| Pentatricopeptide repeat domain-containing protein 3, mitochondrial | 4 | protein | 689 | Homo sapiens | Q96EY7 (AlphaFold model) |
| Dimethyladenosine transferase 1, mitochondrial | 5 | protein | 346 | Homo sapiens | Q8WVM0 |
| Putative ribosome-binding factor A, mitochondrial | 6 | protein | 343 | Homo sapiens | Q8N0V3 |
| Methyltransferase-like protein 17, mitochondrial | 7 | protein | 456 | Homo sapiens | Q9H7H0 |
| Malonyl-CoA-acyl carrier protein transacylase, mitochondrial | 8 | protein | 390 | Homo sapiens | Q8IVS2 |
| 12S mitochondrial rRNA | A | RNA | 955 | Homo sapiens | |
| 28S ribosomal protein S2, mitochondrial | B | protein | 296 | Homo sapiens | Q9Y399 |
| 28S ribosomal protein S24, mitochondrial | C | protein | 167 | Homo sapiens | Q96EL2 |
| 28S ribosomal protein S5, mitochondrial | D | protein | 430 | Homo sapiens | P82675 |
22 more molecules are not listed.
Sequence of entity 1 (0), FASTA
>8CSR_1 28S ribosomal protein S34, mitochondrial (chains 0)
MARKKVRPRLIAELARRVRALREQLNRPRDSQLYAVDYETLTRPFSGRRLPVRAWADVRR
ESRLLQLLGRLPLFGLGRLVTRKSWLWQHDEPCYWRLTRVRPDYTAQNLDHGKAWGILTF
KGKTESEAREIEHVMYHDWRLVPKHEEEAFTAFTPAPEDSLASVPYPPLLRAMIIAERQK
NGDTSTEEPMLNVQRIRMEPWDYPAKQEDKGRAKGTPV
Sequence of entity 2 (1), FASTA
>8CSR_2 28S ribosomal protein S35, mitochondrial (chains 1)
MAAAALPAWLSLQSRARTLRAFSTAVYSATPVPTPSLPERTPGNERPPRRKALPPRTEKM
AVDQDWPSVYPVAAPFKPSAVPLPVRMGYPVKKGVPMAKEGNLELLKIPNFLHLTPVAIK
KHCEALKDFCTEWPAALDSDEKCEKHFPIEIDSTDYVSSGPSVRNPRARVVVLRVKLSSL
NLDDHAKKKLIKLVGERYCKTTDVLTIKTDRCPLRRQNYDYAVYLLTVLYHESWNTEEWE
KSKTEADMEEYIWENSSSERNILETLLQMKAAEKNMEINKEELLGTKEIEEYKKSVVSLK
NEEENENSISQYKESVKRLLNVT
Sequence of entity 3 (3), FASTA
>8CSR_3 Aurora kinase A-interacting protein (chains 3)
MLLGRLTSQLLRAVPWAGGRPPWPVSGVLGSRVCGPLYSTSPAGPGRAASLPRKGAQLEL
EEMLVPRKMSVSPLESWLTARCFLPRLDTGTAGTVAPPQSYQCPPSQIGEGAEQGDEGVA
DAPQIQCKNVLKIRRRKMNHHKYRKLVKKTRFLRRKVQEGRLRRKQIKFEKDLRRIWLKA
GLKEAPEGWQTPKIYLRGK
Sequence of entity 4 (4), FASTA
>8CSR_4 Pentatricopeptide repeat domain-containing protein 3, mitochondrial (chains 4)
MAVVSAVRWLGLRSRLGQPLTGRRAGLCEQARSCRFYSGSATLSKVEGTDVTGIEEVVIP
KKKTWDKVAVLQALASTVNRDTTAVPYVFQDDPYLMPASSLESRSFLLAKKSGENVAKFI
INSYPKYFQKDIAEPHIPCLMPEYFEPQIKDISEAALKERIELRKVKASVDMFDQLLQAG
TTVSLETTNSLLDLLCYYGDQEPSTDYHFQQTGQSEALEEENDETSRRKAGHQFGVTWRA
KNNAERIFSLMPEKNEHSYCTMIRGMVKHRAYEQALNLYTELLNNRLHADVYTFNALIEA
TVCAINEKFEEKWSKILELLRHMVAQKVKPNLQTFNTILKCLRRFHVFARSPALQVLREM
KAIGIEPSLATYHHIIRLFDQPGDPLKRSSFIIYDIMNELMGKRFSPKDPDDDKFFQSAM
SICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYSKFFDLICLMEQIDVTLKWYED
LIPSAYFPHSQTMIHLLQALDVANRLEVIPKIWKDSKEYGHTFRSDLREEILMLMARDKH
PPELQVAFADCAADIKSAYESQPIRQTAQDWPATSLNCIAILFLRAGRTQEAWKMLGLFR
KHNKIPRSELLNELMDSAKVSNSPSQAIEVVELASAFSLPICEGLTQRVMSDFAINQEQK
EALSNLTALTSDSDTDSSSDSDSDTSEGK
Sequence of entity 5 (5), FASTA
>8CSR_5 Dimethyladenosine transferase 1, mitochondrial (chains 5)
MAASGKLSTCRLPPLPTIREIIKLLRLQAAKQLSQNFLLDLRLTDKIVRKAGNLTNAYVY
EVGPGPGGITRSILNADVAELLVVEKDTRFIPGLQMLSDAAPGKLRIVHGDVLTFKVEKA
FSESLKRPWEDDPPNVHIIGNLPFSVSTPLIIKWLENISCRDGPFVYGRTQMTLTFQKEV
AERLAANTGSKQRSRLSVMAQYLCNVRHIFTIPGQAFVPKPEVDVGVVHFTPLIQPKIEQ
PFKLVEKVVQNVFQFRRKYCHRGLRMLFPEAQRLESTGRLLELADIDPTLRPRQLSISHF
KSLCDVYRKMCDEDPQLFAYNFREELKRRKSKNEEKEEDDAENYRL
Sequence of entity 6 (6), FASTA
>8CSR_6 Putative ribosome-binding factor A, mitochondrial (chains 6)
MWAAAGGLWRSRAGLRALFRSRDAALFPGCERGLHCSAVSCKNWLKKFASKTKKKVWYES
PSLGSHSTYKPSKLEFLMRSTSKKTRKEDHARLRALNGLLYKALTDLLCTPEVSQELYDL
NVELSKVSLTPDFSACRAYWKTTLSAEQNAHMEAVLQRSAAHMRHLLMSQQTLRNVPPIV
FVQDKGNAALAELDQLLAVADFGPRDERDNFVQNDFRDPDAPQPCGTTEPTTSSSLCGID
HEALNKQIMEYKRRKDKGLGGLVWQGQVAELTTQMKKGRKRAKPRLEQDSSLKSYLSGEE
VEDDLDLVGAPEYECYAPDTEELEAERGGGRTEDGHSCGASRE
Sequence of entity 7 (7), FASTA
>8CSR_7 Methyltransferase-like protein 17, mitochondrial (chains 7)
MAAALKCLLTLGRWCPGLGVAPQARALAALVPGVTQVDNKSGFLQKRPHRQHPGILKLPH
VRLPQALANGAQLLLLGSAGPTMENQVQTLTSYLWSRHLPVEPEELQRRARHLEKKFLEN
PDLSQTEEKLRGAVLHALRKTTYHWQELSYTEGLSLVYMAARLDGGFAAVSRAFHEIRAR
NPAFQPQTLMDFGSGTGSVTWAAHSIWGQSLREYMCVDRSAAMLVLAEKLLKGGSESGEP
YIPGVFFRQFLPVSPKVQFDVVVSAFSLSELPSKADRTEVVQTLWRKTGHFLVLVENGTK
AGHSLLMDARDLVLKGKEKSPLDPRPGFVFAPCPHELPCPQLTNLACSFSQAYHPIPFSW
NKKPKEEKFSMVILARGSPEEAHRWPRITQPVLKRPRHVHCHLCCPDGHMQHAVLTARRH
GRDLYRCARVSSWGDLLPVLTPSAFPPSTAQDPSES
Sequence of entity 8 (8), FASTA
>8CSR_8 Malonyl-CoA-acyl carrier protein transacylase, mitochondrial (chains 8)
MSVRVARVAWVRGLGASYRRGASSFPVPPPGAQGVAELLRDATGAEEEAPWAATERRMPG
QCSVLLFPGQGSQVVGMGRGLLNYPRVRELYAAARRVLGYDLLELSLHGPQETLDRTVHC
QPAIFVASLAAVEKLHHLQPSVIENCVAAAGFSVGEFAALVFAGAMEFAEGLYAVKIRAE
AMQEASEAVPSGMLSVLGQPQSKFNFACLEAREHCKSLGIENPVCEVSNYLFPDCRVISG
HQEALRFLQKNSSKFHFRRTRMLPVSGAFHTRLMEPAVEPLTQALKAVDIKKPLVSVYSN
VHAHRYRHPGHIHKLLAQQLVSPVKWEQTMHAIYERKKGRGFPQTFEVGPGRQLGAILKS
CNMQAWKSYSAVDVLQTLEHVDLDPQEPPR
Sequence of entity 9 (A), FASTA
>8CSR_9 12S mitochondrial rRNA (chains A)
AAUAGGUUUGGUCCUAGCCUUUCUAUUAGCUCUUAGUAAGAUUACACAUGCAAGCAUCCC
CGUUCCAGUGAGUUCACCCUCUAAAUCACCACGAUCAAAAGGGACAAGCAUCAAGCACGC
AGCAAUGCAGCUCAAAACGCUUAGCCUAGCCACACCCCCACGGGAAACAGCAGUGAUUAA
CCUUUAGCAAUAAACGAAAGUUUAACUAAGCUAUACUAACCCCAGGGUUGGUCAAUUUCG
UGCCAGCCACCGCGGUCACACGAUUAACCCAAGUCAAUAGAAGCCGGCGUAAAGAGUGUU
UUAGAUCACCCCCUCCCCAAUAAAGCUAAAACUCACCUGAGUUGUAAAAAACUCCAGUUG
ACACAAAAUAGACUACGAAAGUGGCUUUAACAUAUCUGAACACACAAUAGCUAAGACCCA
AACUGGGAUUAGAUACCCCACUAUGCUUAGCCCUAAACCUCAACAGUUAAAUCAACAAAA
CUGCUCGCCAGAACACUACGAGCCACAGCUUAAAACUCAAAGGACCUGGCGGUGCUUCAU
AUCCCUCUAGAGGAGCCUGUUCUGUAAUCGAUAAACCCCGAUCAACCUCACCACCUCUUG
CUCAGCCUAUAUACCGCCAUCUUCAGCAAACCCUGAUGAAGGCUACAAAGUAAGCGCAAG
UACCCACGUAAAGACGUUAGGUCAAGGUGUAGCCCAUGAGGUGGCAAGAAAUGGGCUACA
UUUUCUACCCCAGAAAACUACGAUAGCCCUUAUGAAACUUAAGGGUCGAAGGUGGAUUUA
GCAGUAAACUGAGAGUAGAGUGCUUAGUUGAACAGGGCCCUGAAGCGCGUACACACCGCC
CGUCACCCUCCUCAAGUAUACUUCAAAGGACAUUUAACUAAAACCCCUACGCAUUUAUAU
AGAGGAGACAAGUCGUAACAUGGUAAGUGUACUGGAAAGUGCACUUGGACGAACC
Sequence of entity 10 (B), FASTA
>8CSR_10 28S ribosomal protein S2, mitochondrial (chains B)
MATSSAALPRILGAGARAPSRWLGFLGKATPRPARPSRRTLGSATALMIRESEDSTDFND
KILNEPLKHSDFFNVKELFSVRSLFDARVHLGHKAGCRHRFMEPYIFGSRLDHDIIDLEQ
TATHLQLALNFTAHMAYRKGIILFISRNRQFSYLIENMARDCGEYAHTRYFRGGMLTNAR
LLFGPTVRLPDLIIFLHTLNNIFEPHVAVRDAAKMNIPTVGIVDTNCNPCLITYPVPGND
DSPLAVHLYCRLFQTAITRAKEKRQQVEALYRLQGQKEPGDQGPAHPPGADMSHSL
Sequence of entity 11 (C), FASTA
>8CSR_11 28S ribosomal protein S24, mitochondrial (chains C)
MAASVCSGLLGPRVLSWSRELPCAWRALHTSPVCAKNRAARVRVSKGDKPVTYEEAHAPH
YIAHRKGWLSLHTGNLDGEDHAAERTVEDVFLRKFMWGTFPGCLADQLVLKRRGNQLEIC
AVVLRQLSPHKYYFLVGYSETLLSYFYKCPVRLHLQTVPSKVVYKYL
Sequence of entity 12 (D), FASTA
>8CSR_12 28S ribosomal protein S5, mitochondrial (chains D)
MATAVRAVGCLPVLCSGTAGHLLGRQCSLNTLPAASILAWKSVLGNGHLSSLGTRDTHPY
ASLSRALQTQCCISSPSHLMSQQYRPYSFFTKLTADELWKGALAETGAGAKKGRGKRTKK
KKRKDLNRGQIIGEGRYGFLWPGLNVPLMKNGAVQTIAQRSKEEQEKVEADMIQQREEWD
RKKKMKVKRERGWSGNSWGGISLGPPDPGPCGETYEDFDTRILEVRNVFTMTAKEGRKKS
IRVLVAVGNGKGAAGFSIGKATDRMDAFRKAKNRAVHHLHYIERYEDHTIFHDISLRFKR
THIKMKKQPKGYGLRCHRAIITICRLIGIKDMYAKVSGSINMLSLTQGLFRGLSRQETHQ
QLADKKGLHVVEIREECGPLPIVVASPRGPLRKDPEPEDEVPDVKLDWEDVKTAQGMKRS
VWSNLKRAAT
Ligands and cofactors
| ID | Name | Formula | Copies |
|---|
| GDP | Guanosine-5'-diphosphate | C10 H15 N5 O11 P2 | 1 |
| ATP | Adenosine-5'-triphosphate | C10 H16 N5 O13 P3 | 1 |
| FES | FE2/S2 (inorganic) cluster | Fe2 S2 | 2 |
| ZN | Zinc ion | Zn | 1 |
| NAD | Nicotinamide-adenine-dinucleotide | C21 H27 N7 O14 P2 | 1 |
| MG | Magnesium ion | Mg | 31 |
| SAM | S-adenosylmethionine | C15 H22 N6 O5 S | 1 |
| SF4 | Iron/sulfur cluster | Fe4 S4 | 1 |
Water and common crystallization additives (K) are not listed.
Primary citation
Principles of mitoribosomal small subunit assembly in eukaryotes. Harper, N.J., Burnside, C., Klinge, S. Nature (2023) 614:175-181. DOI 10.1038/s41586-022-05621-0 · PubMed
Other PDB entries of the same protein (UniProt P82930 (AlphaFold model), which also has an AlphaFold model), best resolution first:
- 7QI4 2.21 Å, Human mitochondrial ribosome at 2.2 A resolution (bound to partly built tRNAs and mRNA)
- 8CSS 2.36 Å, Human mitochondrial small subunit assembly intermediate (State D)
- 7P2E 2.4 Å, Human mitochondrial ribosome small subunit in complex with IF3, GMPPMP and streptomycin
- 8RRI 2.4 Å, Human mitochondrial ribosome in complex with antibiotic tigecycline
- 9OLF 2.46 Å, Membrane-associated human mitoribosome in complex with TACO1
- 9OJM 2.5 Å, Human mitochondrial 28S PIC with tRNA and mtIF2
- 8CSQ 2.54 Å, Human mitochondrial small subunit assembly intermediate (State B)
- 6ZM6 2.59 Å, Human mitochondrial ribosome in complex with mRNA, A/A tRNA and P/P tRNA
- 7QI5 2.63 Å, Human mitochondrial ribosome in complex with mRNA, A/A-, P/P- and E/E-tRNAs at 2.63 A…
- 9RU6 2.64 Å, Human mitoribosome bound to TACO1 (Translational activator of COX1), mRNA, A/A-, P/P-…
- 8CSP 2.66 Å, Human mitochondrial small subunit assembly intermediate (State A)
- 7PNX 2.76 Å, Assembly intermediate of human mitochondrial ribosome small subunit without mS37 in…
Browse structure collections
About this viewer
MolViewer shows 8CSR directly in your browser with nothing to install. Switch between cartoon, ball-and-stick, spacefill and surface views, color by chain, secondary structure or B-factor, measure distances, angles and dihedrals, and share or embed the view.