8J07: Dynein regulatory complex subunit 4

96nm repeat of human respiratory doublet microtubule and associated axonemal complexes. Determined by electron microscopy at 4.1 Å resolution. Released 26 Jul 2023.

Method
Electron microscopy
Resolution
4.1 Å
Organism
Homo sapiens
Chains
974
Atoms
3,163,608
Mol. weight
53328.11 kDa
Ligands
GTP, MG, GDP
Released
26 Jul 2023

Explore 8J07 in 3D Show helices and sheets RCSB PDB PDBe

Secondary structure: helices and β-sheets

8J07 contains 18,871 α-helices and 14,378 β-strands across 974 chains. Residue ranges use author residue numbering, as in the PDB file, from PDBe. To see them in 3D, choose the Cartoon representation with Secondary structure coloring: helices, sheets and coils get different colors.

Chain 0: 5 helices, 1 β-strand

ElementResiduesLengthSheet
α-helix6-149
α-helix28-6033
α-helix63-360298
α-helix362-39231
α-helix397-44549
β-strand47511
Chain 1: 12 helices, 0 β-strands
ElementResiduesLengthSheet
α-helix77-14468
α-helix150-422273
α-helix423-4286
α-helix491-50212
α-helix504-5063
α-helix509-5157
α-helix520-53516
α-helix541-55212
α-helix622-63514
α-helix655-66612
α-helix671-71949
α-helix723-7253
Chain 10: 8 helices, 0 β-strands
ElementResiduesLengthSheet
α-helix47-6721
α-helix69-746
α-helix80-834
α-helix85-10117
α-helix141-16121
α-helix163-1719
α-helix178-19922
α-helix202-420219
Chain 11: 42 helices, 8 β-strands
ElementResiduesLengthSheet
α-helix3-2927
α-helix35-6228
α-helix66-9429
α-helix102-1087
α-helix112-1154
α-helix117-1204
α-helix122-1254
α-helix128-14518
α-helix161-20040
α-helix207-23832
α-helix242-2432
α-helix249-2502
α-helix251-26414
α-helix386-3894
α-helix392-40615
α-helix497-5059
β-strand5081360
α-helix510-5123
α-helix516-5183
α-helix527-5326
α-helix536-5405
α-helix541-5488
α-helix549-5535
α-helix554-5574
α-helix559-5646
α-helix566-5672
β-strand570-5745360
α-helix581-59212
α-helix5941
β-strand595-5984360
α-helix601-6044
α-helix611-62717
β-strand631-6366360
α-helix638-6414
β-strand6431361
α-helix651-6533
α-helix655-6584
α-helix662-6687
β-strand675-6817360
β-strand6871361
α-helix689-6957
β-strand698-7014360
α-helix707-72115
α-helix731-7377
α-helix743-75311
α-helix756-7616
α-helix769-7768
α-helix780-7834
α-helix784-79613
α-helix798-80811
Chain 12: 9 helices, 2 β-strands
ElementResiduesLengthSheet
α-helix153-16210
β-strand169-1713497
α-helix172-1743
α-helix175-1828
α-helix188-19912
β-strand206-2083497
α-helix209-22214
α-helix226-2294
α-helix230-24011
α-helix250-2589
α-helix263-2664
Chain 13: 7 helices, 2 β-strands
ElementResiduesLengthSheet
α-helix134-16229
β-strand169-1713643
α-helix172-18110
α-helix188-19811
β-strand206-2083643
α-helix209-22214
α-helix226-2294
α-helix230-24011
α-helix250-25910
Chain 14: 8 helices, 2 β-strands
ElementResiduesLengthSheet
α-helix134-16229
β-strand169-1713777
α-helix172-1743
α-helix175-1828
α-helix188-19811
β-strand206-2083777
α-helix209-22214
α-helix226-2294
α-helix230-24011
α-helix250-2589
Chain 1A: 37 helices, 13 β-strands
ElementResiduesLengthSheet
α-helix274-2785
α-helix280-2812
α-helix284-2885
α-helix292-2987
β-strand3051909
α-helix309-3124
α-helix315-3162
β-strand3231910
α-helix325-3284
α-helix330-3323
α-helix334-3374
α-helix340-3434
α-helix344-35411
α-helix358-3625
α-helix3761
β-strand3861911
α-helix396-3994
α-helix406-4138
α-helix417-4248
β-strand4321912
α-helix459-4657
α-helix468-4758
β-strand479-4813913
α-helix482-49110
β-strand4981914
α-helix503-5053
β-strand5141915
α-helix519-5213
α-helix525-5306
α-helix542-56221
α-helix566-5738
β-strand5811916
α-helix583-59210
α-helix599-60911
β-strand6171916
α-helix619-6257
α-helix636-6405
α-helix669-6713
β-strand672-6743917
β-strand682-6843917
α-helix702-7054
α-helix730-7323
α-helix749-7535
α-helix757-7604
α-helix765-7684
β-strand7711918
α-helix774-78411
α-helix790-80314
β-strand8101918
α-helix811-82111

948 more chain groups are not listed. Open the entry in the viewer and use the sequence panel to see them.

Molecules and chains

MoleculeChainsTypeLengthOrganismUniProt
Dynein regulatory complex subunit 40, 4protein478Homo sapiensO95995 (AlphaFold model)
Dynein regulatory complex protein 11protein740Homo sapiensQ96MC2 (AlphaFold model)
Dynein regulatory complex protein 1010protein449Homo sapiensQ96DY2 (AlphaFold model)
Dynein regulatory complex protein 1111protein822Homo sapiensQ86XH1 (AlphaFold model)
Dynein regulatory complex protein 812, 13, 14, 8protein269Homo sapiensQ5VUJ9
EF-hand domain-containing family member B1A, 1B, 1Cprotein833Homo sapiensQ8N7U6
Cilia- and flagella-associated protein 451D, 1E, 1F, 1G, 1H, 1I, 1Jprotein551Homo sapiensQ9UL16
Cilia- and flagella-associated protein 521L, 1M, 1N, 1O, 1P, 1Qprotein620Homo sapiensQ8N1V2
Cilia- and flagella-associated protein 531R, 1S, 1Tprotein514Homo sapiensQ96M91
Cilia- and flagella-associated protein 951V, 1Wprotein229Homo sapiensQ5VTT2
Cilia- and flagella-associated protein 1071Y, 1Zprotein194Homo sapiensQ8N1D5
Dynein regulatory complex subunit 22protein484Homo sapiensQ8IXS2

94 more molecules are not listed.

Sequence of entity 1 (0, 4), FASTA
>8J07_1 Dynein regulatory complex subunit 4 (chains 0, 4)
MAPKKKGKKGKAKGTPIVDGLAPEDMSKEQVEEHVSRIREELDREREERNYFQLERDKIH
TFWEITRRQLEEKKAELRNKDREMEEAEERHQVEIKVYKQKVKHLLYEHQNNLTEMKAEG
TVVMKLAQKEHRIQESVLRKDMRALKVELKEQELASEVVVKNLRLKHTEEITRMRNDFER
QVREIEAKYDKKMKMLRDELDLRRKTELHEVEERKNGQIHTLMQRHEEAFTDIKNYYNDI
TLNNLALINSLKEQMEDMRKKEDHLEREMAEVSGQNKRLADPLQKAREEMSEMQKQLANY
ERDKQILLCTKARLKVREKELKDLQWEHEVLEQRFTKVQQERDELYRKFTAAIQEVQQKT
GFKNLVLERKLQALSAAVEKKEVQFNEVLAASNLDPAALTLVSRKLEDVLESKNSTIKDL
QYELAQVCKAHNDLLRTYEAKLLAFGIPLDNVGFKPLETAVIGQTLGQGPAGLVGTPT
Sequence of entity 2 (1), FASTA
>8J07_2 Dynein regulatory complex protein 1 (chains 1)
MNPPGSLEALDPNVDEHLSTQILAPSVHSDNSQERIQARRLRIAARLEARRREALGEYLD
GKKESEEDQSKSYKQKEESRLKLAKLLLCGTELVTNIQVAIDIREIHRRVEEEEIKRQRI
EKLENEVKTSQDKFDEITSKWEEGKQKRIPQELWEMLNTQQLHCAGLLEDKNKLISELQQ
ELKTKDDQYVKDLKKQSDDICLLLERMEEQVKNVMKTFREELYNIEKAFEVERQELLASN
KKKWEQALQAHNAKELEYLNNRMKKVEDYEKQLNRQRIWDCEEYNMIKIKLEQDVQILEQ
QLQQRKAIYQLNQEKLEYNLQVLKKRDEESTVIKSQQKRKINRLHDILNNLRSKYAKQIK
QFQEENQSLTSDYKRLVMQFKELQKAMRHFALIDDEKFWEIWLMNEEEAKDLIARAFDVD
RIIHTHHLGLPWAAPDFWFLNNVGPISQQPQKSATQIVEEMLMRSEEEEAEEAAAEPESY
LDLPKQISEKTTKRILMLLCDESGFLIESKLLSLLLPLEQNECYLLRLDAIFSALGIESE
DDLYKLVNFFLKYRAHRLSSSLQIKPCSQASMEKASMEETSTRSELELAEQTEMEGEKEE
SLVEGEKEEEEETPPSPWVIHPNDVLKILEAFVMGLKKPRDSRAPLRVQKNVRDNSKDSE
YWQALTTVIPSSKQNLWDALYTALEKYHLVLTQRAKLLLENSSLEQQNTELQALLQQYLN
SKINSELQVPPTQVLRVPTK
Sequence of entity 3 (10), FASTA
>8J07_3 Dynein regulatory complex protein 10 (chains 10)
MALDILAMAPLYQAPAINRIGPKTDPSKRPADPLKPLVLSRTKLTTIEAKRIMSILDEAI
YKVELVTLLSYVASNREDMEGMLGEDVMRAVREHEDLCQVLLENVRCLKEKERQLQEQKE
AEEEGWLRDRLLSIELQKSSLSPLMQQIKDSTKNVLRLLLSNPQAARLLQMQTQGRSAEA
QNFIDSLIELRGFLFEKLLTSPMEARDKAQFLQDISRQNSNNQQIIDTLEKELAERMKNR
NAEVEKENFVIQELKNHLHQVLKFSENSLVRTKQEAEKQQKADFRASQARVAKIQQEILQ
LQSQFYNLVMENREAEQALRKKKYKVETEIENWIQKYDTEMGEKQEELEDLDAVHREEKI
SLEELRRRHKVLVGEFAQIREEREINSKKRMEAEQEMVRMVRAATLIQALWKGYLVRSLL
RSKKKRGKGKAKDKEKGKQKGKEKGKGKK
Sequence of entity 4 (11), FASTA
>8J07_4 Dynein regulatory complex protein 11 (chains 11)
MSNAMYNKMWHQTQEALGALLDKEPQKMIEPQRNQVFIFQTLATFYVKYVQIFRNLENVY
DQFVHPQKRILIRKVLDGVMGRILELKNEMVELELTEFHYFDDILQDLKLAPQQLDIPIP
KYFLKEKLEVIKGREKILAQILADSGIDTSDMKYPVKSIPFDEAVKLIQIAERARQGRLR
ALFMKQIYLQEYRAKQSKMLGKKVTDTWAAALRIQKVWRRFHQRKETEKLREEEMIFLGM
NPPPLFNEVSATVIQAEKVDRLRNEVQIKHEEDYREALVTIKNDLKLIEGVDIKENLQDQ
IRHWFIECRNLTGTFPDYPDVEEGGSAIIFSDKTIQQVIEDIIANQEEEEKNKKKKKKKE
KQPKKAKKQKKGTKEKNKEEDEKWKMSPSLFLPAMKEGCNAYKEIWMKKDESWNFSQDYD
PELIKEEKRKELQSEIRIQVDELMRQELKNLKLAVDRERERPVKAGKKKDKKGKKGKKKE
KKAKKDKDLTADRTIESLYKELVEEGLLIQALKVNLSDYIGEYSYLGTTLRQVSIEPMPS
LLDVRQLITLYGIWPLGSAAVHEKAPLVKSLLLAGPSGVGKKMLVHAICTETGANLFNLS
SSNIAGKYPGKNGLQMMLHAVFKVARQLQPSVVWIEDTEKTFYKKVPNAEKMNEPKRLKK
HLPQILKLLKPDDRILIVGTTRRPFDAELQSFCKVYQKIILVPRPDYASRYVLWKQIIER
NGGVLTSALNVSCLAKVTDGFTQGHIVEVVKGVLTDQRIRRQIHKPLTAVEFITAITSMN
PVYKEEEESFKNWYAKTPLGKKRALAITGGSTEKAKDKGKRK
Sequence of entity 5 (12, 13, 14, 8), FASTA
>8J07_5 Dynein regulatory complex protein 8 (chains 12, 13, 14, 8)
MLGPGQVRLRPRVWRDKAGGRVADGASGLPPARGSWRETGTGRALGASSPPRPAQGSSSP
GIQSGPSSRPGSPRGAEQAGTPRPRLSLGISQATGSAARWRTRRTGKGLGYNSDEIRPRT
LLIEHLMEGGRRDHHTMTVLWGTQEIIVAEFHKKIKEAFEVFDHESNNTVDVREIGTIIR
SLGCCPTEGELHDLIAEVEEEEPTGYIRFEKFLPVMTEILLERKYRPIPEDVLLRAFEVL
DSAKRGFLTKDELIKYMTEEDGVSLRRPG
Sequence of entity 6 (1A, 1B, 1C), FASTA
>8J07_6 EF-hand domain-containing family member B (chains 1A, 1B, 1C)
MNMEIGHPHEGKDDLGDKRVIMGTKFPMELGIRVGLGKEDSRCGESPVVSNKCEGRMAPP
ETKFPLSKGLEMGLERQNISRTVMQRGSLGVDSVSASQGTKPSLLPGRMGLENESLLAGY
THERIIQPPLGRVCGSSQAAGSRRAPLASGPEGVEELVGKPAFVMEPRQEMEKESTCVLM
KPNTEIKLPVEVDIGLTQAEGPDETKNTEPQMGLVIEPPQCQFAQQHEQRKEAGNIESGV
EPPDRIRPIYSGKFFDRTPCWPSAGKVIPVGYRVATCLTEKLPRLITPPEAKKYFNFRYP
PAGVERVFYGRANDPQIAPYLTHGIRSKISVLANTLINPQPITTFQQKIKDKKESIYLSN
RRAPLGKSHDQAPGLPKGMDTTNTTFGTAVIKEYSAKDVVNPPKSYEEVFKEGNEGHDLY
VVSHNDYYAGEAKNRKYNPSSFHRCSVYGVPTPHFNDGRAMAKSLYWLHELQMKRGAKFV
SKRADDFKEKFQHKLGRVLDPIAETMNVPPDCTFGACLRPEEYGVGDLIHNRLPDEYLRG
KDRQRALIAAVRHHLKKVNYQKFDTLLAAFRHYDKKGDGMIDKDELQEACDQANLSLDDK
LLDQLFDYCDVDNDGFINYLEFANFLNWKDKMLLKEYEERVIIKGRKPDCVNPTEANVEE
PEQTLLIKPEDIVLKEAGSTEKTLRTLLRPSDKVSNYYKTTSSEINAIVGAIPSTCYPIC
GVPTIRSDIPAPRIRRISDRTNYGEEGSAYSLLYPTIFARKGVFERDFFKTRSKEEIAEI
LCNIGVKLSDEEFENVWNLASKKHHRGEVCVENIRNVLDELRHADRIKCKTLM
Sequence of entity 7 (1D, 1E, 1F, 1G, 1H, 1I, 1J), FASTA
>8J07_7 Cilia- and flagella-associated protein 45 (chains 1D, 1E, 1F, 1G, 1H, 1I, 1J)
MPLSTAGILSSSSAASNRSRNKARYRTKAVSSEVDESLFGDIKSPAQGQSDSPIVLLRDK
HTLQKTLTALGLDRKPETIQLITRDMVRELIVPTEDPSGESLIISPEEFERIKWASHVLT
REELEARDQAFKKEKEATMDAVMTRKKIMKQKEMVWNNNKKLSDLEEVAKERAQNLLQRA
NKLRMEQEEELKDMSKIILNAKCHAIRDAQILEKQQIQKELDTEEKRLDQMMEVERQKSI
QRQEELERKRREERIRGRRQIVEQMEKNQEERSLLAEQREQEKEQMLEYMEQLQEEDLKD
MERRQQQKLKMQAEIKRINDENQKQKAELLAQEKLADQMVMEFTKKKMAREAEFEAEQER
IRREKEKEIARLRAMQEKAQDYQAEQDALRAKRNQEVADREWRRKEKENARKKMETEAEL
RKSRLEQVAFKEHALAVQVQRDRDEFERILRAQREQIEKERLEEEKKATGRLQHANELRR
QVRENQQKEVQNRIATFEEGRRLKEEAQKRRERIDEIKRKKLEELRATGLPEKYCIEAER
KANILPATSVN
Sequence of entity 8 (1L, 1M, 1N, 1O, 1P, 1Q), FASTA
>8J07_8 Cilia- and flagella-associated protein 52 (chains 1L, 1M, 1N, 1O, 1P, 1Q)
MDNKISPEAQVAELELDAVIGFNGHVPTGLKCHPDQEHMIYPLGCTVLIQAINTKEQNFL
QGHGNNVSCLAISRSGEYIASGQVTFMGFKADIILWDYKNRELLARLSLHKGKIEALAFS
PNDLYLVSLGGPDDGSVVVWSIAKRDAICGSPAAGLNVGNATNVIFSRCRDEMFMTAGNG
TIRVWELDLPNRKIWPTECQTGQLKRIVMSIGVDDDDSFFYLGTTTGDILKMNPRTKLLT
DVGPAKDKFSLGVSAIRCLKMGGLLVGSGAGLLVFCKSPGYKPIKKIQLQGGITSITLRG
EGHQFLVGTEESHIYRVSFTDFKETLIATCHFDAVEDIVFPFGTAELFATCAKKDIRVWH
TSSNRELLRITVPNMTCHGIDFMRDGKSIISAWNDGKIRAFAPETGRLMYVINNAHRIGV
TAIATTSDCKRVISGGGEGEVRVWQIGCQTQKLEEALKEHKSSVSCIRVKRNNEECVTAS
TDGTCIIWDLVRLRRNQMILANTLFQCVCYHPEEFQIITSGTDRKIAYWEVFDGTVIREL
EGSLSGSINGMDITQEGVHFVTGGNDHLVKVWDYNEGEVTHVGVGHSGNITRIRISPGNQ
YIVSVSADGAILRWKYPYTS
Sequence of entity 9 (1R, 1S, 1T), FASTA
>8J07_9 Cilia- and flagella-associated protein 53 (chains 1R, 1S, 1T)
MYSQRFGTVQREVKGPTPKVVIVRSKPPKGQGAEHHLERIRRSHQKHNAILASIKSSERD
RLKAEWDQHNDCKILDSLVRARIKDAVQGFIINIEERRNKLRELLALEENEYFTEMQLKK
ETIEEKKDRMREKTKLLKEKNEKERQDFVAEKLDQQFRERCEELRVELLSIHQKKVCEER
KAQIAFNEELSRQKLVEEQMFSKLWEEDRLAKEKREAQEARRQKELMENTRLGLNAQITS
IKAQRQATQLLKEEEARLVESNNAQIKHENEQDMLKKQKAKQETRTILQKALQERIEHIQ
QEYRDEQDLNMKLVQRALQDLQEEADKKKQKREDMIREQKIYHKYLAQRREEEKAQEKEF
DRILEEDKAKKLAEKDKELRLEKEARRQLVDEVMCTRKLQVQEKLQREAKEQEERAMEQK
HINESLKELNCEEKENFARRQRLAQEYRKQLQMQIAYQQQSQEAEKEEKRREFEAGVAAN
KMCLDKVQEVLSTHQVLPQNIHPMRKACPSKLPP
Sequence of entity 10 (1V, 1W), FASTA
>8J07_10 Cilia- and flagella-associated protein 95 (chains 1V, 1W)
MDSLDRSCQDWCDRKQHWLEIGPPDLVERKGSLTLRSHHKKYSKPVLVYSWHRDREAFPK
GYDIEGPEKVKKLCNSTYRRLGTDESPIWTSETHEKLSQMCLNTEWVEMKSKALLNEETV
SSGIIERVTGLPATGFGAVFPRHPPDWSKMCALTTYSEDYVPPYDYQPHAYPCQDDYSIV
HRKCRSQFTDLNGSKRFGINTWHDESGIYANSDVKQKLYPLTSGPIVPI
Sequence of entity 11 (1Y, 1Z), FASTA
>8J07_11 Cilia- and flagella-associated protein 107 (chains 1Y, 1Z)
MFLTAVNPQPLSTPSWQIETKYSTKVLTGNWMEERRKFTRDTDKTPQSIYRKEYIPFPDH
RPDQISRWYGKRKVEGLPYKHLITHHQEPPHRYLISTYDDHYNRHGYNPGLPPLRTWNGQ
KLLWLPEKSDFPLLAPPTNYGLYEQLKQRQLTPKAGLKQSTYTSSYPRPPLCAMSWREHA
VPVPPHRLHPFPHF
Sequence of entity 12 (2), FASTA
>8J07_12 Dynein regulatory complex subunit 2 (chains 2)
MPKKEKMAKTPLSDEKQLLLFQQKLLAEEEMAKKKERLLSQFLKDKLAKEEHNSALNLNK
INTQWRTVLREVKTRELHKDIEILSQTFERVVDCKDNVIKSLAKDLSEAEEQYAHALRSH
LHNVDQLLALQRHRLSLLEESYNMELEALTKEFETERKTIIDQHEKEIHYLQDIFMAMEQ
NYIDSEYESKLEFQSMWNDLKNMNLEEKHFLRLHLENRVEDLWRKFQDVLKNYTDATEDR
KAAFETLQVKDEKSSKEIEVQMKKIQKLQDAITISKGKIMIHSRESEDENRYIRNDKELV
LVQLRKLKAQRTQARAASQKNLVRLTLESNATLKALRKIVDKGEKILKLAEICRKFETEE
EKVLPFYSSVLTPKEQEGIQKNNLEELTEELTKVMVDYIGMENFWKRYNKVKLEQLSLQH
RRAQLLDINGKLREMLKQYLDGISVSDEVLSQLNPLFIVNYQSNLLQPLSIRIAHPGDKQ
HPTT

Ligands and cofactors

IDNameFormulaCopies
GTPGuanosine-5'-triphosphateC10 H16 N5 O14 P3285
MGMagnesium ionMg285
GDPGuanosine-5'-diphosphateC10 H15 N5 O11 P2289

Primary citation

Axonemal structures reveal mechanoregulatory and disease mechanisms. Walton, T., Gui, M., Velkova, S. et al. Nature (2023) 618:625-633. DOI 10.1038/s41586-023-06140-2 · PubMed

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