CryoEM structure of the Salmonella effector inositol phosphate phosphatase SopB. Determined by electron microscopy at 2.62 Å resolution. Released 10 Jul 2024.
Explore 8JZL in 3D Show helices and sheets RCSB PDB PDBe
8JZL contains 144 α-helices and 60 β-strands across 6 chains. Residue ranges use author residue numbering, as in the PDB file, from PDBe. To see them in 3D, choose the Cartoon representation with Secondary structure coloring: helices, sheets and coils get different colors.
| Element | Residues | Length | Sheet |
|---|---|---|---|
| α-helix | 73-91 | 19 | |
| α-helix | 96-110 | 15 | |
| α-helix | 112-113 | 2 | |
| α-helix | 118-142 | 25 | |
| α-helix | 147-168 | 22 | |
| β-strand | 174-180 | 7 | 1 |
| β-strand | 183-191 | 9 | 1 |
| α-helix | 192-194 | 3 | |
| β-strand | 196-197 | 2 | 2 |
| β-strand | 200-201 | 2 | 2 |
| β-strand | 227-235 | 9 | 1 |
| β-strand | 238-248 | 11 | 1 |
| α-helix | 259-279 | 21 | |
| α-helix | 282-289 | 8 | |
| β-strand | 294-302 | 9 | 1 |
| α-helix | 313-327 | 15 | |
| α-helix | 332-333 | 2 | |
| β-strand | 334-339 | 6 | 1 |
| β-strand | 345-358 | 14 | 1 |
| α-helix | 363-366 | 4 | |
| α-helix | 372-387 | 16 | |
| α-helix | 399-405 | 7 | |
| α-helix | 412-428 | 17 | |
| α-helix | 430-432 | 3 | |
| α-helix | 440-451 | 12 | |
| β-strand | 455-459 | 5 | 1 |
| α-helix | 466-482 | 17 | |
| α-helix | 487-489 | 3 | |
| α-helix | 496-508 | 13 | |
| α-helix | 511-519 | 9 | |
| α-helix | 533-535 | 3 | |
| α-helix | 539-542 | 4 | |
| α-helix | 546-552 | 7 | |
| α-helix | 556-558 | 3 |
| Molecule | Chains | Type | Length | Organism | UniProt |
|---|---|---|---|---|---|
| Inositol phosphate phosphatase SopB | A, B, C, D, E, F | protein | 498 | Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) | O30916 (AlphaFold model) |
>8JZL_1 Inositol phosphate phosphatase SopB (chains A, B, C, D, E, F) QHQKASNHSLHNLYNLQRDLLTVAATVLGKQDPVLTSMANQMELAKVKADRPATKQEEAA AKALKKNLIELIAARTQQQDGLPAKEAHRFAAVAFRDAQVKQLNNQPWQTIKNTLTHNGH HYTNTQLPAAEMKIGAKDIFPSAYEGKGVCSWDTKNIHHANNLWMSTVSVHEDGKDKTLF CGIRHGVLSPYHEKDPLLRHVGAENKAKEVLTAALFSKPELLNKALAGEAVSLKLVSVGL LTASNIFGKEGTMVEDQMRAWQSLTQPGKMIHLKIRNKDGDLQTVKIKPDVAAFNVGVNE LALKLGFGLKASDSYNAEALHQLLGNDLRPEARPGGWVGEWLAQYPDNYEVVNTLARQIK DIWKNNQHHKDGGEPYKLAQRLAMLAHEIDAVPAWNCKSGKDRTGMMDSEIKREIISLHQ THMLSAPGSLPDSGGQKIFQKVLLNSGNLEIQKQNTGGAGNKVMKNLSPEVLNLSYQKRV GDENIWQSVKGISSLITS
CryoEM structure of the Salmonella effector inositol phosphate phosphatase SopB. Jiang, W.X., Cheng, X.Q., Wu, M. et al. To be published.
Other PDB entries of the same protein (UniProt O30916 (AlphaFold model), which also has an AlphaFold model), best resolution first:
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