8Y0U: Dormant ribosome with STM1
dormant ribosome with STM1. Determined by electron microscopy at 3.59 Å resolution. Released 7 Feb 2024.
- Method
- Electron microscopy
- Resolution
- 3.59 Å
- Organism
- Saccharomyces cerevisiae
- Chains
- 77
- Atoms
- 196,269
- Mol. weight
- 3092.55 kDa
- Ligands
- ZN, MG
- Released
- 7 Feb 2024
Explore 8Y0U in 3D
Show helices and sheets
RCSB PDB
PDBe
Secondary structure: helices and β-sheets
8Y0U contains 456 α-helices and 468 β-strands across 73 chains. Residue ranges use author residue numbering, as in the PDB file, from PDBe. To see them in 3D, choose the Cartoon representation with Secondary structure coloring: helices, sheets and coils get different colors.
Chain 5: 2 helices, 11 β-strands
| Element | Residues | Length | Sheet |
|---|
| β-strand | 19-20 | 2 | 88 |
| α-helix | 23-25 | 3 | |
| β-strand | 33-34 | 2 | 89 |
| β-strand | 37-38 | 2 | 89 |
| β-strand | 39-48 | 10 | 90 |
| β-strand | 55-63 | 9 | 90 |
| β-strand | 69-75 | 7 | 90 |
| β-strand | 81-82 | 2 | 88 |
| β-strand | 90-92 | 3 | 91 |
| β-strand | 102-103 | 2 | 91 |
| α-helix | 119-128 | 10 | |
| β-strand | 134-139 | 6 | 91 |
| β-strand | 146-152 | 7 | 91 |
Chain La: 6 helices, 7 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 3-5 | 3 | |
| α-helix | 8-11 | 4 | |
| α-helix | 42-48 | 7 | |
| β-strand | 72-74 | 3 | 29 |
| α-helix | 84-92 | 9 | |
| β-strand | 99-100 | 2 | 87 |
| β-strand | 101-103 | 3 | 30 |
| α-helix | 104-107 | 4 | |
| β-strand | 111-113 | 3 | 29 |
| β-strand | 124-127 | 4 | 30 |
| β-strand | 129-130 | 2 | 29 |
| α-helix | 132-141 | 10 | |
| β-strand | 144-147 | 4 | 30 |
Chain LA: 10 helices, 16 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 3-5 | 3 | |
| α-helix | 6-9 | 4 | |
| α-helix | 35-37 | 3 | |
| β-strand | 41-49 | 9 | 1 |
| α-helix | 57 | 1 | |
| β-strand | 58-62 | 5 | 1 |
| β-strand | 73-77 | 5 | 1 |
| β-strand | 79 | 1 | 2 |
| β-strand | 83 | 1 | 3 |
| β-strand | 87-90 | 4 | 1 |
| β-strand | 101-103 | 3 | 1 |
| α-helix | 104-106 | 3 | |
| β-strand | 112-114 | 3 | 1 |
| β-strand | 134-136 | 3 | 1 |
| β-strand | 140 | 1 | 1 |
| β-strand | 145-149 | 5 | 1 |
| β-strand | 155-159 | 5 | 1 |
| β-strand | 163-166 | 4 | 1 |
| β-strand | 169 | 1 | 2 |
| α-helix | 174-176 | 3 | |
| α-helix | 182-190 | 9 | |
| α-helix | 201-203 | 3 | |
| α-helix | 206-208 | 3 | |
| β-strand | 224-225 | 2 | 4 |
| α-helix | 229-230 | 2 | |
| β-strand | 237-238 | 2 | 4 |
Chain Lb: 2 helices, 0 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 12-17 | 6 | |
| α-helix | 37-58 | 22 | |
Chain LB: 19 helices, 16 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 9-10 | 2 | |
| α-helix | 21-22 | 2 | |
| α-helix | 27-29 | 3 | |
| α-helix | 33-35 | 3 | |
| α-helix | 40-41 | 2 | |
| β-strand | 45-59 | 15 | 18 |
| β-strand | 71-80 | 10 | 18 |
| α-helix | 82-83 | 2 | |
| β-strand | 84-95 | 12 | 19 |
| β-strand | 98-105 | 8 | 19 |
| α-helix | 112-115 | 4 | |
| α-helix | 116-118 | 3 | |
| α-helix | 134-136 | 3 | |
| α-helix | 142-153 | 12 | |
| β-strand | 157-163 | 7 | 19 |
| α-helix | 166-168 | 3 | |
| β-strand | 178-182 | 5 | 19 |
| α-helix | 188-198 | 11 | |
| β-strand | 202-203 | 2 | 19 |
| α-helix | 205-207 | 3 | |
| β-strand | 214-220 | 7 | 18 |
| α-helix | 221-223 | 3 | |
| β-strand | 227 | 1 | 20 |
| α-helix | 229-233 | 5 | |
| α-helix | 235-239 | 5 | |
| α-helix | 260-261 | 2 | |
| β-strand | 268 | 1 | 20 |
| β-strand | 274-286 | 13 | 18 |
| α-helix | 307 | 1 | |
| β-strand | 311 | 1 | 21 |
| β-strand | 315 | 1 | 21 |
| β-strand | 321-325 | 5 | 18 |
| β-strand | 335-340 | 6 | 18 |
| β-strand | 356-359 | 4 | 18 |
| α-helix | 373-380 | 8 | |
Chain Lc: 4 helices, 4 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 11-20 | 10 | |
| β-strand | 22-25 | 4 | 35 |
| α-helix | 27-36 | 10 | |
| β-strand | 41-44 | 4 | 35 |
| α-helix | 50-63 | 14 | |
| β-strand | 66-69 | 4 | 35 |
| α-helix | 74-80 | 7 | |
| β-strand | 89-94 | 6 | 35 |
Chain LC: 19 helices, 14 β-strands
| Element | Residues | Length | Sheet |
|---|
| β-strand | 6-7 | 2 | 36 |
| α-helix | 8 | 1 | |
| β-strand | 9 | 1 | 37 |
| β-strand | 10 | 1 | 38 |
| β-strand | 13 | 1 | 38 |
| β-strand | 19-20 | 2 | 36 |
| α-helix | 32-42 | 11 | |
| α-helix | 43-45 | 3 | |
| β-strand | 63-64 | 2 | 39 |
| β-strand | 75-76 | 2 | 39 |
| β-strand | 88 | 1 | 39 |
| α-helix | 115-129 | 15 | |
| α-helix | 132-138 | 7 | |
| β-strand | 151-152 | 2 | 37 |
| α-helix | 154-158 | 5 | |
| α-helix | 162-172 | 11 | |
| α-helix | 175-183 | 9 | |
| β-strand | 186-187 | 2 | 40 |
| α-helix | 191-194 | 4 | |
| β-strand | 199-200 | 2 | 40 |
| β-strand | 206-209 | 4 | 37 |
| α-helix | 215-219 | 5 | |
| β-strand | 226-229 | 4 | 37 |
| α-helix | 235-238 | 4 | |
| α-helix | 240-242 | 3 | |
| β-strand | 248-251 | 4 | 37 |
| α-helix | 252-262 | 11 | |
| α-helix | 287-290 | 4 | |
| α-helix | 300-301 | 2 | |
| α-helix | 321-327 | 7 | |
| α-helix | 330-337 | 8 | |
| α-helix | 342-346 | 5 | |
| α-helix | 353-360 | 8 | |
Chain Ld: 4 helices, 5 β-strands
| Element | Residues | Length | Sheet |
|---|
| β-strand | 9-15 | 7 | 41 |
| α-helix | 16-20 | 5 | |
| α-helix | 28-44 | 17 | |
| β-strand | 49-51 | 3 | 41 |
| α-helix | 53-59 | 7 | |
| α-helix | 60-62 | 3 | |
| β-strand | 70-79 | 10 | 41 |
| β-strand | 89-95 | 7 | 41 |
| β-strand | 107-108 | 2 | 41 |
65 more chain groups are not listed. Open the entry in the viewer and use the sequence panel to see them.
Molecules and chains
| Molecule | Chains | Type | Length | Organism | UniProt |
|---|
| Large ribosomal subunit protein uL2A | LA | protein | 254 | Saccharomyces cerevisiae | P0CX45 (AlphaFold model) |
| Small ribosomal subunit protein uS2A | SA | protein | 252 | Saccharomyces cerevisiae | P32905 (AlphaFold model) |
| Large ribosomal subunit protein uL3 | LB | protein | 387 | Saccharomyces cerevisiae | P14126 (AlphaFold model) |
| 40S ribosomal protein S1-A | SB | protein | 255 | Saccharomyces cerevisiae | P33442 (AlphaFold model) |
| 25S rRNA | C1 | RNA | 3396 | Saccharomyces cerevisiae | |
| 5S rRNA | C4 | RNA | 121 | Saccharomyces cerevisiae | |
| 5.8S rRNA | C3 | RNA | 158 | Saccharomyces cerevisiae | |
| Large ribosomal subunit protein uL4A | LC | protein | 362 | Saccharomyces cerevisiae | P10664 |
| Large ribosomal subunit protein uL18 | LD | protein | 297 | Saccharomyces cerevisiae | P26321 |
| Large ribosomal subunit protein eL6B | LE | protein | 176 | Saccharomyces cerevisiae | P05739 |
| Large ribosomal subunit protein uL30A | LF | protein | 244 | Saccharomyces cerevisiae | P05737 |
| Large ribosomal subunit protein eL8A | LG | protein | 256 | Saccharomyces cerevisiae | P17076 |
65 more molecules are not listed.
Sequence of entity 1 (LA), FASTA
>8Y0U_1 Large ribosomal subunit protein uL2A (chains LA)
MGRVIRNQRKGAGSIFTSHTRLRQGAAKLRTLDYAERHGYIRGIVKQIVHDSGRGAPLAK
VVFRDPYKYRLREEIFIANEGVHTGQFIYAGKKASLNVGNVLPLGSVPEGTIVSNVEEKP
GDRGALARASGNYVIIIGHNPDENKTRVRLPSGAKKVISSDARGVIGVIAGGGRVDKPLL
KAGRAFHKYRLKRNSWPKTRGVAMNPVDHPHGGGNHQHIGKASTISRGAVSGQKAGLIAA
RRTGLLRGSQKTQD
Sequence of entity 2 (SA), FASTA
>8Y0U_2 Small ribosomal subunit protein uS2A (chains SA)
MSLPATFDLTPEDAQLLLAANTHLGARNVQVHQEPYVFNARPDGVHVINVGKTWEKLVLA
ARIIAAIPNPEDVVAISSRTFGQRAVLKFAAHTGATPIAGRFTPGSFTNYITRSFKEPRL
VIVTDPRSDAQAIKEASYVNIPVIALTDLDSPSEFVDVAIPCNNRGKHSIGLIWYLLARE
VLRLRGALVDRTQPWSIMPDLYFYRDPEEVEQQVAEEATTEEAGEEEAKEEVTEEQAEAT
EWAEENADNVEW
Sequence of entity 3 (LB), FASTA
>8Y0U_3 Large ribosomal subunit protein uL3 (chains LB)
MSHRKYEAPRHGHLGFLPRKRAASIRARVKAFPKDDRSKPVALTSFLGYKAGMTTIVRDL
DRPGSKFHKREVVEAVTVVDTPPVVVVGVVGYVETPRGLRSLTTVWAEHLSDEVKRRFYK
NWYKSKKKAFTKYSAKYAQDGAGIERELARIKKYASVVRVLVHTQIRKTPLAQKKAHLAE
IQLNGGSISEKVDWAREHFEKTVAVDSVFEQNEMIDAIAVTKGHGFEGVTHRWGTKKLPR
KTHRGLRKVACIGAWHPAHVMWSVARAGQRGYHSRTSINHKIYRVGKGDDEANGATSFDR
TKKTITPMGGFVHYGEIKNDFIMVKGCIPGNRKRIVTLRKSLYTNTSRKALEEVSLKWID
TASKFGKGRFQTPAEKHAFMGTLKKDL
Sequence of entity 4 (SB), FASTA
>8Y0U_4 40S ribosomal protein S1-A (chains SB)
MAVGKNKRLSKGKKGQKKRVVDPFTRKEWFDIKAPSTFENRNVGKTLVNKSTGLKSASDA
LKGRVVEVCLADLQGSEDHSFRKIKLRVDEVQGKNLLTNFHGMDFTTDKLRSMVRKWQTL
IEANVTVKTSDDYVLRIFAIAFTRKQANQVKRHSYAQSSHIRAIRKVISEILTKEVQGST
LAQLTSKLIPEVINKEIENATKDIFPLQNIHVRKVKLLKQPKFDVGALMALHGEGSGEEK
GKKVTGFKDEVLETV
Sequence of entity 5 (C1), FASTA
>8Y0U_5 25S rRNA (chains C1)
GUUUGACCUCAAAUCAGGUAGGAGUACCCGCUGAACUUAAGCAUAUCAAUAAGCGGAGGA
AAAGAAACCAACCGGGAUUGCCUUAGUAACGGCGAGUGAAGCGGCAAAAGCUCAAAUUUG
AAAUCUGGUACCUUCGGUGCCCGAGUUGUAAUUUGGAGAGGGCAACUUUGGGGCCGUUCC
UUGUCUAUGUUCCUUGGAACAGGACGUCAUAGAGGGUGAGAAUCCCGUGUGGCGAGGAGU
GCGGUUCUUUGUAAAGUGCCUUCGAAGAGUCGAGUUGUUUGGGAAUGCAGCUCUAAGUGG
GUGGUAAAUUCCAUCUAAAGCUAAAUAUUGGCGAGAGACCGAUAGCGAACAAGUACAGUG
AUGGAAAGAUGAAAAGAACUUUGAAAAGAGAGUGAAAAAGUACGUGAAAUUGUUGAAAGG
GAAGGGCAUUUGAUCAGACAUGGUGUUUUGUGCCCUCUGCUCCUUGUGGGUAGGGGAAUC
UCGCAUUUCACUGGGCCAGCAUCAGUUUUGGUGGCAGGAUAAAUCCAUAGGAAUGUAGCU
UGCCUCGGUAAGUAUUAUAGCCUGUGGGAAUACUGCCAGCUGGGACUGAGGACUGCGACG
UAAGUCAAGGAUGCUGGCAUAAUGGUUAUAUGCCGCCCGUCUUGAAACACGGACCAAGGA
GUCUAACGUCUAUGCGAGUGUUUGGGUGUAAAACCCAUACGCGUAAUGAAAGUGAACGUA
GGUUGGGGCCUCGCAAGAGGUGCACAAUCGACCGAUCCUGAUGUCUUCGGAUGGAUUUGA
GUAAGAGCAUAGCUGUUGGGACCCGAAAGAUGGUGAACUAUGCCUGAAUAGGGUGAAGCC
AGAGGAAACUCUGGUGGAGGCUCGUAGCGGUUCUGACGUGCAAAUCGAUCGUCGAAUUUG
GGUAUAGGGGCGAAAGACUAAUCGAACCAUCUAGUAGCUGGUUCCUGCCGAAGUUUCCCU
CAGGAUAGCAGAAGCUCGUAUCAGUUUUAUGAGGUAAAGCGAAUGAUUAGAGGUUCCGGG
GUCGAAAUGACCUUGACCUAUUCUCAAACUUUAAAUAUGUAAGAAGUCCUUGUUACUUAA
UUGAACGUGGACAUUUGAAUGAAGAGCUUUUAGUGGGCCAUUUUUGGUAAGCAGAACUGG
CGAUGCGGGAUGAACCGAACGUAGAGUUAAGGUGCCGGAAUACACGCUCAUCAGACACCA
CAAAAGGUGUUAGUUCAUCUAGACAGCCGGACGGUGGCCAUGGAAGUCGGAAUCCGCUAA
GGAGUGUGUAACAACUCACCGGCCGAAUGAACUAGCCCUGAAAAUGGAUGGCGCUCAAGC
GUGUUACCUAUACUCUACCGUCAGGGUUGAUAUGAUGCCCUGACGAGUAGGCAGGCGUGG
AGGUCAGUGACGAAGCCUAGACCGUAAGGUCGGGUCGAACGGCCUCUAGUGCAGAUCUUG
GUGGUAGUAGCAAAUAUUCAAAUGAGAACUUUGAAGACUGAAGUGGGGAAAGGUUCCACG
UCAACAGCAGUUGGACGUGGGUUAGUCGAUCCUAAGAGAUGGGGAAGCUCCGUUUCAAAG
GCCUGAUUUUAUGCAGGCCACCAUCGAAAGGGAAUCCGGUUAAGAUUCCGGAACCUGGAU
AUGGAUUCUUCACGGUAACGUAACUGAAUGUGGAGACGUCGGCGCGAGCCCUGGGAGGAG
UUAUCUUUUCUUCUUAACAGCUUAUCACCCCGGAAUUGGUUUAUCCGGAGAUGGGGUCUU
AUGGCUGGAAGAGGCCAGCACCUUUGCUGGCUCCGGUGCGCUUGUGACGGCCCGUGAAAA
UCCACAGGAAGGAAUAGUUUUCAUGCCAGGUCGUACUGAUAACCGCAGCAGGUCUCCAAG
GUGAACAGCCUCUAGUUGAUAGAAUAAUGUAGAUAAGGGAAGUCGGCAAAAUAGAUCCGU
AACUUCGGGAUAAGGAUUGGCUCUAAGGGUCGGGUAGUGAGGGCCUUGGUCAGACGCAGC
GGGCGUGCUUGUGGACUGCUUGGUGGGGCUUGCUCUGCUAGGCGGACUACUUGCGUGCCU
UGUUGUAGACGGCCUUGGUAGGUCUCUUGUAGACCGUCGCUUGCUACAAUUAACGAUCAA
CUUAGAACUGGUACGGACAAGGGGAAUCUGACUGUCUAAUUAAAACAUAGCAUUGCGAUG
GUCAGAAAGUGAUGUUGACGCAAUGUGAUUUCUGCCCAGUGCUCUGAAUGUCAAAGUGAA
GAAAUUCAACCAAGCGCGGGUAAACGGCGGGAGUAACUAUGACUCUCUUAAGGUAGCCAA
AUGCCUCGUCAUCUAAUUAGUGACGCGCAUGAAUGGAUUAACGAGAUUCCCACUGUCCCU
AUCUACUAUCUAGCGAAACCACAGCCAAGGGAACGGGCUUGGCAGAAUCAGCGGGGAAAG
AAGACCCUGUUGAGCUUGACUCUAGUUUGACAUUGUGAAGAGACAUAGAGGGUGUAGAAU
AAGUGGGAGCUUCGGCGCCAGUGAAAUACCACUACCUUUAUAGUUUCUUUACUUAUUCAA
UGAAGCGGAGCUGGAAUUCAUUUUCCACGUUCUAGCAUUCAAGGUCCCAUUCGGGGCUGA
UCCGGGUUGAAGACAUUGUCAGGUGGGGAGUUUGGCUGGGGCGGCACAUCUGUUAAACGA
UAACGCAGAUGUCCUAAGGGGGGCUCAUGGAGAACAGAAAUCUCCAGUAGAACAAAAGGG
UAAAAGCCCCCUUGAUUUUGAUUUUCAGUGUGAAUACAAACCAUGAAAGUGUGGCCUAUC
GAUCCUUUAGUCCCUCGGAAUUUGAGGCUAGAGGUGCCAGAAAAGUUACCACAGGGAUAA
CUGGCUUGUGGCAGUCAAGCGUUCAUAGCGACAUUGCUUUUUGAUUCUUCGAUGUCGGCU
CUUCCUAUCAUACCGAAGCAGAAUUCGGUAAGCGUUGGAUUGUUCACCCACUAAUAGGGA
ACGUGAGCUGGGUUUAGACCGUCGUGAGACAGGUUAGUUUUACCCUACUGAUGAAUGUUA
CCGCAAUAGUAAUUGAACUUAGUACGAGAGGAACAGUUCAUUCGGAUAAUUGGUUUUUGC
GGCUGUCUGAUCAGGCAUUGCCGCGAAGCUACCAUCCGCUGGAUUAUGGCUGAACGCCUC
UAAGUCAGAAUCCAUGCUAGAACGCGGUGAUUUCUUUGCUCCACACAAUAUAGAUGGAUA
CGAAUAAGGCGUCCUUGUGGCGUCGCUGAACCAUAGCAGGCUAGCAACGGUGCACUUGGC
GGAAAGGCCUUGGGUGCUUGCUGGCGAAUUGCAAUGUCAUUUUGCGUGGGGAUAAAUCAU
UUGUAUACGACUUAGAUGUACAACGGGGUAUUGUAAGCAGUAGAGUAGCCUUGUUGUUAC
GAUCUGCUGAGAUUAAGCCUUUGUUGUCUGAUUUGU
Sequence of entity 6 (C4), FASTA
>8Y0U_6 5S rRNA (chains C4)
GGUUGCGGCCAUAUCUACCAGAAAGCACCGUUUCCCGUCCGAUCAACUGUAGUUAAGCUG
GUAAGAGCCUGACCGAGUAGUGUAGUGGGUGACCAUACGCGAAACUCAGGUGCUGCAAUC
U
Sequence of entity 7 (C3), FASTA
>8Y0U_7 5.8S rRNA (chains C3)
AAACUUUCAACAACGGAUCUCUUGGUUCUCGCAUCGAUGAAGAACGCAGCGAAAUGCGAU
ACGUAAUGUGAAUUGCAGAAUUCCGUGAAUCAUCGAAUCUUUGAACGCACAUUGCGCCCC
UUGGUAUUCCAGGGGGCAUGCCUGUUUGAGCGUCAUUU
Sequence of entity 8 (LC), FASTA
>8Y0U_8 Large ribosomal subunit protein uL4A (chains LC)
MSRPQVTVHSLTGEATANALPLPAVFSAPIRPDIVHTVFTSVNKNKRQAYAVSEKAGHQT
SAESWGTGRAVARIPRVGGGGTGRSGQGAFGNMCRGGRMFAPTKTWRKWNVKVNHNEKRY
ATASAIAATAVASLVLARGHRVEKIPEIPLVVSTDLESIQKTKEAVAALKAVGAHSDLLK
VLKSKKLRAGKGKYRNRRWTQRRGPLVVYAEDNGIVKALRNVPGVETANVASLNLLQLAP
GAHLGRFVIWTEAAFTKLDQVWGSETVASSKVGYTLPSHIISTSDVTRIINSSEIQSAIR
PAGQATQKRTHVLKKNPLKNKQVLLRLNPYAKVFAAEKLGSKKAEKTGTKPAAVFTETLK
HD
Sequence of entity 9 (LD), FASTA
>8Y0U_9 Large ribosomal subunit protein uL18 (chains LD)
MAFQKDAKSSAYSSRFQTPFRRRREGKTDYYQRKRLVTQHKAKYNTPKYRLVVRFTNKDI
ICQIISSTITGDVVLAAAYSHELPRYGITHGLTNWAAAYATGLLIARRTLQKLGLDETYK
GVEEVEGEYELTEAVEDGPRPFKVFLDIGLQRTTTGARVFGALKGASDGGLYVPHSENRF
PGWDFETEEIDPELLRSYIFGGHVSQYMEELADDDEERFSELFKGYLADDIDADSLEDIY
TSAHEAIRADPAFKPTEKKFTKEQYAAESKKYRQTKLSKEERAARVAAKIAALAGQQ
Sequence of entity 10 (LE), FASTA
>8Y0U_10 Large ribosomal subunit protein eL6B (chains LE)
MTAQQAPKWYPSEDVAAPKKTRKAVRPQKLRASLVPGTVLILLAGRFRGKRVVYLKHLED
NTLLVTGPFKVNGVPLRRVNARYVIATSTKVSVEGVNVEKFNVEYFAKEKLTKKEKKEAN
LFPEQQTKEIKTERVEDQKVVDKALLAEIKKTPLLKQYLSASFSLKNGDKPHLLKF
Sequence of entity 11 (LF), FASTA
>8Y0U_11 Large ribosomal subunit protein uL30A (chains LF)
MAAEKILTPESQLKKSKAQQKTAEQVAAERAARKAANKEKRAIILERNAAYQKEYETAER
NIIQAKRDAKAAGSYYVEAQHKLVFVVRIKGINKIPPKPRKVLQLLRLTRINSGTFVKVT
KATLELLKLIEPYVAYGYPSYSTIRQLVYKRGFGKINKQRVPLSDNAIIEANLGKYGILS
IDDLIHEIITVGPHFKQANNFLWPFKLSNPSGGWGVPRKFKHFIQGGSFGNREEFINKLV
KSMN
Sequence of entity 12 (LG), FASTA
>8Y0U_12 Large ribosomal subunit protein eL8A (chains LG)
MAPGKKVAPAPFGAKSTKSNKTRNPLTHSTPKNFGIGQAVQPKRNLSRYVKWPEYVRVQR
QKKILSIRLKVPPTIAQFQYTLDRNTAAETFKLFNKYRPETAAEKKERLTKEAAAVAEGK
SKQDASPKPYAVKYGLNHVVALIENKKAKLVLIANDVDPIELVVFLPALCKKMGVPYAIV
KGKARLGTLVNQKTSAVAALTEVRAEDEAALAKLVSTIDANFADKYDEVKKHWGGGILGN
KAQAKMDKRAKNSDSA
Ligands and cofactors
| ID | Name | Formula | Copies |
|---|
| ZN | Zinc ion | Zn | 7 |
| MG | Magnesium ion | Mg | 281 |
Primary citation
Implication of Stm1 in the protection of eIF5A, eEF2 and tRNA through dormant ribosomes. Du, M., Li, X., Dong, W. et al. Front Mol Biosci (2024) 11:1395220-1395220. DOI 10.3389/fmolb.2024.1395220 · PubMed
Other PDB entries of the same protein (UniProt P0CX45 (AlphaFold model), which also has an AlphaFold model), best resolution first:
- 9PN5 1.75 Å, Composite map of hypomethylated 80S ribosome treated with hygromycin B
- 8CCS 1.97 Å, 80S S. cerevisiae ribosome with ligands in hybrid-1 pre-translocation (PRE-H1) complex
- 8CDR 2.04 Å, Translocation intermediate 2 (TI-2) of 80S S. cerevisiae ribosome with ligands and eEF2…
- 8CEH 2.05 Å, Translocation intermediate 4 (TI-4) of 80S S. cerevisiae ribosome with ligands and eEF2…
- 8P8N 2.15 Å, Mouse RPL39 integrated into the yeast 60S ribosomal subunit
- 8PFR 2.15 Å, Mouse RPL39L integrated into the yeast 60S ribosomal subunit
- 8EVT 2.2 Å, Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome…
- 8T2Y 2.2 Å, Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, and A-site tRNA,…
- 8P8U 2.23 Å, Yeast 60S ribosomal subunit
- 8CGN 2.28 Å, Non-rotated 80S S. cerevisiae ribosome with ligands
- 8ZHC 2.3 Å, pre-frameshift complex of yeast 80S ribosome with eRF1 and mRNA of WNV
- 7UOO 2.34 Å, Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state
Browse structure collections
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