9M4S: Arabidopsis thaliana ING2 PHD finger

crystal structure of Arabidopsis thaliana ING2 PHD finger in complex with an H3K4me3 peptide. Determined by X-ray diffraction at 1.6 Å resolution. Released 5 Nov 2025.

Method
X-ray diffraction
Resolution
1.6 Å
Organism
Arabidopsis thaliana
Chains
2
Atoms
637
Mol. weight
9.91 kDa
Ligands
ZN
Released
5 Nov 2025

Explore 9M4S in 3D Show helices and sheets RCSB PDB PDBe

Secondary structure: helices and β-sheets

9M4S contains 3 α-helices and 5 β-strands across 2 chains. Residue ranges use author residue numbering, as in the PDB file, from PDBe. To see them in 3D, choose the Cartoon representation with Secondary structure coloring: helices, sheets and coils get different colors.

Chain A: 3 helices, 4 β-strands

ElementResiduesLengthSheet
β-strand207-20821
β-strand213-21421
β-strand218-22142
β-strand232-23432
α-helix235-2384
α-helix240-2412
α-helix255-2573
Chain P: 0 helices, 1 β-strand
ElementResiduesLengthSheet
β-strand3-532

Molecules and chains

MoleculeChainsTypeLengthOrganismUniProt
PHD finger protein ING2Aprotein74Arabidopsis thalianaB3H615 (AlphaFold model)
Histone H3.1Pprotein10Arabidopsis thalianaP59226 (AlphaFold model)
Sequence of entity 1 (A), FASTA
>9M4S_1 PHD finger protein ING2 (chains A)
NRKDLMPIEEQPIDPNEPTYCVCHQVSFGDMIACDNENCQGGEWFHYTCVGLTPETRFKG
KWYCPTCRLLPQSH
Sequence of entity 2 (P), FASTA
>9M4S_2 Histone H3.1 (chains P)
ARTKQTARKS

Ligands and cofactors

IDNameFormulaCopies
ZNZinc ionZn2

Primary citation

A pair of readers of histone H3K4 methylation recruit Polycomb repressive complex 2 to regulate photoperiodic flowering. Luo, X., Li, X., Chen, Z. et al. Nat Commun (2025) 16:9376-9376. DOI 10.1038/s41467-025-64419-6 · PubMed

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