Ribonuclease M5 (rnmV) is a 187-residue protein from Geobacillus stearothermophilus. This is its AlphaFold structure prediction, created 1 Jun 2022. UniProt accession: A0A087LGV4.
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The mean pLDDT of this model is 89.3 (confident overall). pLDDT is AlphaFold's per-residue confidence score from 0 to 100. In MolViewer, choose the B-factor color scheme to color the model by pLDDT, because AlphaFold stores it in the B-factor column.
| pLDDT band | Meaning | Share of residues |
|---|---|---|
| Above 90 | Very high: backbone and side chains are usually accurate | 65% |
| 70 to 90 | Confident: backbone generally right | 29% |
| 50 to 70 | Low: treat with caution | 5% |
| Below 50 | Very low: often disordered regions | 0% |
What pLDDT means and how to read it
Required for correct processing of both the 5' and 3' ends of 5S rRNA precursor. Cleaves both sides of a double-stranded region yielding mature 5S rRNA in one step
Cytoplasm
Compare the prediction with experimentally determined structures of the same protein:
| PDB ID | Method | Resolution | Chains and residues |
|---|---|---|---|
| 6TGJ | X-ray | 1.5 Å | A/B=105-187 |
| 6Z2B | X-ray | 2.14 Å | A/B/C/D=1-113 |
| 6TPQ | EM | 3.07 Å | A/B=1-187 |
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