Glycine receptor, alpha 1 (glra1) is a 444-residue protein from Danio rerio. This is its AlphaFold structure prediction, created 1 Jun 2022. UniProt accession: B3DHZ5.
Explore in 3D Color by confidence AlphaFold DB UniProt
The mean pLDDT of this model is 83.3 (confident overall). pLDDT is AlphaFold's per-residue confidence score from 0 to 100. In MolViewer, choose the B-factor color scheme to color the model by pLDDT, because AlphaFold stores it in the B-factor column.
| pLDDT band | Meaning | Share of residues |
|---|---|---|
| Above 90 | Very high: backbone and side chains are usually accurate | 64% |
| 70 to 90 | Confident: backbone generally right | 14% |
| 50 to 70 | Low: treat with caution | 12% |
| Below 50 | Very low: often disordered regions | 10% |
What pLDDT means and how to read it
Cell projection, dendrite, Perikaryon, Postsynaptic cell membrane
Compare the prediction with experimentally determined structures of the same protein:
| PDB ID | Method | Resolution | Chains and residues |
|---|---|---|---|
| 9PKW | EM | 2.86 Å | A/B/C/D=1-444 |
| 9PKX | EM | 2.86 Å | A/B/C/D=1-444 |
| 9PKY | EM | 2.89 Å | A/B/C/D=1-444 |
| 9PKZ | EM | 2.89 Å | A/B/C/D=1-444 |
MolViewer loads the AlphaFold model straight from AlphaFold DB into your browser. Show it as a cartoon, color by pLDDT, measure distances and angles, and load a PDB structure next to it to compare.