G1TDB3: Small ribosomal subunit protein eS25 (RPS25)

Small ribosomal subunit protein eS25 (RPS25) is a 124-residue protein from Oryctolagus cuniculus. This is its AlphaFold structure prediction, created 1 Aug 2025. UniProt accession: G1TDB3.

Gene: RPS25
Organism: Oryctolagus cuniculus
Length: 124 residues
Mean pLDDT: 73.6
Model: AF-G1TDB3-F1 v6
Model created: 1 Aug 2025
PDB structures: 118

Explore in 3D Color by confidence AlphaFold DB UniProt

Model confidence (pLDDT)

The mean pLDDT of this model is 73.6 (confident overall). pLDDT is AlphaFold's per-residue confidence score from 0 to 100. In MolViewer, choose the B-factor color scheme to color the model by pLDDT, because AlphaFold stores it in the B-factor column.

pLDDT band	Meaning	Share of residues
Above 90	Very high: backbone and side chains are usually accurate	36%
70 to 90	Confident: backbone generally right	29%
50 to 70	Low: treat with caution	10%
Below 50	Very low: often disordered regions	26%

What pLDDT means and how to read it

Function

Component of the small ribosomal subunit (PubMed:23873042, PubMed:25601755, PubMed:26245381, PubMed:27863242, PubMed:30517857). The ribosome is a large ribonucleoprotein complex responsible for the synthesis of proteins in the cell (PubMed:23873042, PubMed:25601755, PubMed:26245381, PubMed:27863242, PubMed:30517857)

Subunit structure

Component of the small ribosomal subunit

Subcellular location

Cytoplasm

Experimental structures in the PDB

Compare the prediction with experimentally determined structures of the same protein:

PDB ID	Method	Resolution	Chains and residues
7O7Y	EM	2.2 Å	Ay=1-124
7OYD	EM	2.3 Å	ZZ=1-124
7O7Z	EM	2.4 Å	Ay=1-124
8SCB	EM	2.5 Å	ZZ=1-124
9MR4	EM	2.65 Å	OO=1-124
9RHU	EM	2.65 Å	k1=1-124
7JQB	EM	2.7 Å	a=1-124
8VVQ	EM	2.7 Å	ZB=1-124
6SGC	EM	2.8 Å	a1=1-124
7UCK	EM	2.8 Å	ZZ=40-114
9BDL	EM	2.8 Å	AS25=40-114
9QQA	EM	2.8 Å	Ay=1-124
9NDP	EM	2.82 Å	OO=1-124
9Q7Q	EM	2.86 Å	OO=1-124
7O80	EM	2.9 Å	Ay=1-124
7TOR	EM	2.9 Å	AS25=40-114
8P2K	EM	2.9 Å	Ay=1-124
8VVP	EM	2.9 Å	ZB=1-124
8VVT	EM	2.9 Å	ZB=1-124
9H6Y	EM	2.9 Å	n=1-124

Showing 20 of 118 experimental structures (best resolution first).

More AlphaFold highlights

About this viewer

MolViewer loads the AlphaFold model straight from AlphaFold DB into your browser. Show it as a cartoon, color by pLDDT, measure distances and angles, and load a PDB structure next to it to compare.