Envelope glycoprotein is a 59-residue protein from Human immunodeficiency virus 1. This is its AlphaFold structure prediction, created 17 Mar 2025. UniProt accession: M1E1E4.
Explore in 3D Color by confidence AlphaFold DB UniProt
The mean pLDDT of this model is 85.1 (confident overall). pLDDT is AlphaFold's per-residue confidence score from 0 to 100. In MolViewer, choose the B-factor color scheme to color the model by pLDDT, because AlphaFold stores it in the B-factor column.
| pLDDT band | Meaning | Share of residues |
|---|---|---|
| Above 90 | Very high: backbone and side chains are usually accurate | 33% |
| 70 to 90 | Confident: backbone generally right | 55% |
| 50 to 70 | Low: treat with caution | 12% |
| Below 50 | Very low: often disordered regions | 0% |
What pLDDT means and how to read it
Compare the prediction with experimentally determined structures of the same protein:
| PDB ID | Method | Resolution | Chains and residues |
|---|---|---|---|
| 9BJM | X-ray | 2.07 Å | A=1-28 |
| 6VKE | X-ray | 2.1 Å | F=1-28 |
| 6A0Z | X-ray | 2.33 Å | A=1-28 |
| 5KWW | X-ray | 2.5 Å | F=1-28 |
| 6VKD | X-ray | 2.5 Å | F=1-28 |
| 6VKC | X-ray | 2.6 Å | F=1-28 |
| 7ZRV | EM | 2.8 Å | A/B/C=1-30 |
| 7AD1 | EM | 2.92 Å | A/B/C=1-28 |
| 8HFX | EM | 2.98 Å | A/B/C=1-29 |
| 7QTI | EM | 3.04 Å | A/D/K=1-30 |
| 5U68 | X-ray | 3.08 Å | A/B/C=1-28 |
| 6W16 | X-ray | 3.1 Å | F=1-28 |
| 7FJN | EM | 3.25 Å | A/B/C=1-28 |
| 6OUS | X-ray | 3.4 Å | B/D/F/H/J/L=1-28 |
| 6DC3 | X-ray | 3.5 Å | F=1-28 |
| 6DC5 | X-ray | 3.5 Å | A/D/G=1-28 |
| 6CXC | EM | 3.9 Å | A/B/C/D/E/F=1-30 |
| 5I08 | EM | 4.04 Å | A/B/C=1-27 |
| 2LP7 | NMR | A/B/C=1-59 | |
| 2M7W | NMR | A/B/C=1-59 |
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