non-specific serine/threonine protein kinase (NPH1-1) is a 923-residue protein from Avena sativa. This is its AlphaFold structure prediction, created 1 Jun 2022. UniProt accession: O49003.
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The mean pLDDT of this model is 70.2 (confident overall). pLDDT is AlphaFold's per-residue confidence score from 0 to 100. In MolViewer, choose the B-factor color scheme to color the model by pLDDT, because AlphaFold stores it in the B-factor column.
| pLDDT band | Meaning | Share of residues |
|---|---|---|
| Above 90 | Very high: backbone and side chains are usually accurate | 28% |
| 70 to 90 | Confident: backbone generally right | 33% |
| 50 to 70 | Low: treat with caution | 11% |
| Below 50 | Very low: often disordered regions | 27% |
What pLDDT means and how to read it
Protein kinase that acts as a blue light photoreceptor in a signal-transduction pathway for phototropic responses. Regulates a wide range of physiological activities in plants that maximize the efficiency of photosynthesis, such as chloroplast relocations, stomata opening, and leaf expansion
Compare the prediction with experimentally determined structures of the same protein:
| PDB ID | Method | Resolution | Chains and residues |
|---|---|---|---|
| 7PGZ | X-ray | 0.9 Å | AAA=404-546 |
| 7PH0 | X-ray | 0.98 Å | AAA=404-546 |
| 7PGX | X-ray | 1.0 Å | AAA=404-546 |
| 7PGY | X-ray | 1.09 Å | AAA=404-546 |
| 2V0U | X-ray | 1.4 Å | A=404-546 |
| 2V1B | X-ray | 1.55 Å | A=404-546 |
| 2WKQ | X-ray | 1.6 Å | A=404-546 |
| 2V1A | X-ray | 1.65 Å | A=404-546 |
| 2V0W | X-ray | 1.7 Å | A=404-546 |
| 6NTP | X-ray | 1.89 Å | A=406-546 |
| 2WKP | X-ray | 1.9 Å | A=404-546 |
| 4WF0 | X-ray | 1.95 Å | A/B=404-543 |
| 5EFW | X-ray | 2.1 Å | A=404-546 |
| 2WKR | X-ray | 2.2 Å | A=404-546 |
| 5HZH | X-ray | 2.6 Å | A=386-400, A=404-546 |
| 5HZI | X-ray | 2.6 Å | A/B=404-546 |
| 5HZJ | X-ray | 2.6 Å | A/B=404-546 |
| 5HZK | X-ray | 3.3 Å | B/D=404-546 |
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