Lysozyme C-1 is a 147-residue protein from Anas platyrhynchos. This is its AlphaFold structure prediction, created 1 Aug 2025. UniProt accession: P00705.
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The mean pLDDT of this model is 94.0 (very high overall). pLDDT is AlphaFold's per-residue confidence score from 0 to 100. In MolViewer, choose the B-factor color scheme to color the model by pLDDT, because AlphaFold stores it in the B-factor column.
| pLDDT band | Meaning | Share of residues |
|---|---|---|
| Above 90 | Very high: backbone and side chains are usually accurate | 88% |
| 70 to 90 | Confident: backbone generally right | 1% |
| 50 to 70 | Low: treat with caution | 10% |
| Below 50 | Very low: often disordered regions | 1% |
What pLDDT means and how to read it
Lysozymes have primarily a bacteriolytic function; those in tissues and body fluids are associated with the monocyte-macrophage system and enhance the activity of immunoagents
Secreted
Compare the prediction with experimentally determined structures of the same protein:
| PDB ID | Method | Resolution | Chains and residues |
|---|---|---|---|
| 5V92 | X-ray | 1.11 Å | A/B=19-147 |
| 6D9I | X-ray | 1.15 Å | A/B=19-147 |
| 5V8G | X-ray | 1.2 Å | A=19-145 |
| 5V94 | X-ray | 1.65 Å | A/B=19-147 |
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