Regulator of Ty1 transposition protein 107 (RTT107) is a 1070-residue protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c). This is its AlphaFold structure prediction, created 1 Aug 2025. UniProt accession: P38850.
Explore in 3D Color by confidence AlphaFold DB UniProt
The mean pLDDT of this model is 74.4 (confident overall). pLDDT is AlphaFold's per-residue confidence score from 0 to 100. In MolViewer, choose the B-factor color scheme to color the model by pLDDT, because AlphaFold stores it in the B-factor column.
| pLDDT band | Meaning | Share of residues |
|---|---|---|
| Above 90 | Very high: backbone and side chains are usually accurate | 53% |
| 70 to 90 | Confident: backbone generally right | 13% |
| 50 to 70 | Low: treat with caution | 5% |
| Below 50 | Very low: often disordered regions | 30% |
What pLDDT means and how to read it
Required for resumption of chromosome replication after DNA damage, specifically in S phase. Is recruited to chromatin in the presence of RTT109 and RTT101 in response to stalled replication forks and acts as a scaffold during DNA repair
Forms a complex with the cullin-RING ligase (CRL) RTT101(MMS1-MMS22). Interacts with MMS22 and RTT101. Interacts with histone H2A; requires H2A to be phosphorylated (gamma-H2A). Interacts with RAD55
Nucleus
Compare the prediction with experimentally determined structures of the same protein:
| PDB ID | Method | Resolution | Chains and residues |
|---|---|---|---|
| 6J0Y | X-ray | 1.8 Å | A/B=2-513 |
| 3T7K | X-ray | 2.03 Å | A/B=820-1070 |
| 3T7J | X-ray | 2.04 Å | A/B=820-1070 |
| 3T7I | X-ray | 2.3 Å | A/B=820-1070 |
| 6J0V | X-ray | 2.31 Å | A/B=1-513 |
| 6J0X | X-ray | 2.31 Å | A/B/C/D=1-513 |
| 6J0W | X-ray | 2.4 Å | A/B=1-513 |
MolViewer loads the AlphaFold model straight from AlphaFold DB into your browser. Show it as a cartoon, color by pLDDT, measure distances and angles, and load a PDB structure next to it to compare.