Large ribosomal subunit protein uL6 (rplF) is a 179-residue protein from Bacillus subtilis (strain 168). This is its AlphaFold structure prediction, created 1 Aug 2025. UniProt accession: P46898.
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The mean pLDDT of this model is 92.7 (very high overall). pLDDT is AlphaFold's per-residue confidence score from 0 to 100. In MolViewer, choose the B-factor color scheme to color the model by pLDDT, because AlphaFold stores it in the B-factor column.
| pLDDT band | Meaning | Share of residues |
|---|---|---|
| Above 90 | Very high: backbone and side chains are usually accurate | 86% |
| 70 to 90 | Confident: backbone generally right | 11% |
| 50 to 70 | Low: treat with caution | 2% |
| Below 50 | Very low: often disordered regions | 1% |
What pLDDT means and how to read it
This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center
Part of the 50S ribosomal subunit
Compare the prediction with experimentally determined structures of the same protein:
| PDB ID | Method | Resolution | Chains and residues |
|---|---|---|---|
| 8S1P | EM | 1.96 Å | G=1-179 |
| 8QCQ | EM | 2.3 Å | G=1-179 |
| 9FY1 | EM | 2.3 Å | G=1-179 |
| 9FY2 | EM | 2.3 Å | G=1-179 |
| 9FY3 | EM | 2.8 Å | G=1-179 |
| 7AS8 | EM | 2.9 Å | I=1-179 |
| 8BUU | EM | 2.9 Å | G=1-179 |
| 7AQC | EM | 2.99 Å | G=1-179 |
| 6TNN | EM | 3.07 Å | a=1-179 |
| 6TPQ | EM | 3.07 Å | a=1-179 |
| 6HA1 | EM | 3.1 Å | G=1-179 |
| 7AQD | EM | 3.1 Å | G=1-179 |
| 9BSL | EM | 3.1 Å | F=1-179 |
| 9BSS | EM | 3.1 Å | F=1-179 |
| 7OPE | EM | 3.2 Å | I=1-179 |
| 9BS0 | EM | 3.3 Å | F=1-179 |
| 7O5B | EM | 3.33 Å | d=1-179 |
| 8QPP | EM | 3.4 Å | d=2-176 |
| 8S1U | EM | 3.4 Å | G=1-179 |
| 6HA8 | EM | 3.5 Å | G=1-179 |
Showing 20 of 33 experimental structures (best resolution first).
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