Large ribosomal subunit protein eL39 (Rpl39) is a 51-residue protein from Mus musculus. This is its AlphaFold structure prediction, created 1 Aug 2025. UniProt accession: P62892.
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The mean pLDDT of this model is 93.9 (very high overall). pLDDT is AlphaFold's per-residue confidence score from 0 to 100. In MolViewer, choose the B-factor color scheme to color the model by pLDDT, because AlphaFold stores it in the B-factor column.
| pLDDT band | Meaning | Share of residues |
|---|---|---|
| Above 90 | Very high: backbone and side chains are usually accurate | 90% |
| 70 to 90 | Confident: backbone generally right | 10% |
| 50 to 70 | Low: treat with caution | 0% |
| Below 50 | Very low: often disordered regions | 0% |
What pLDDT means and how to read it
RNA-binding component of the large ribosomal subunit (PubMed:36517592). The ribosome is a large ribonucleoprotein complex responsible for the synthesis of proteins in the cell (PubMed:34428590, PubMed:36517592)
Component of the large ribosomal subunit (PubMed:36517592). Interacts with IMPACT (PubMed:22404850)
Cytoplasm
Compare the prediction with experimentally determined structures of the same protein:
| PDB ID | Method | Resolution | Chains and residues |
|---|---|---|---|
| 8P8N | EM | 2.15 Å | 2=1-51 |
| 9H4N | EM | 2.46 Å | f2=2-51 |
| 9QOH | EM | 2.78 Å | f2=1-51 |
| 9QQP | EM | 2.8 Å | f2=1-51 |
| 7CPU | EM | 2.82 Å | Ll=1-51 |
| 9QQL | EM | 3.09 Å | f2=1-51 |
| 6SWA | EM | 3.1 Å | j=2-51 |
| 7LS2 | EM | 3.1 Å | f2=1-51 |
| 9QWT | EM | 3.1 Å | f2=1-51 |
| 7LS1 | EM | 3.3 Å | f2=1-51 |
| 9QSA | EM | 3.4 Å | f2=1-51 |
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