Encapsulin nanocompartment cargo protein EncB (encB) is a 158-residue protein from Myxococcus xanthus (strain DK1622). This is its AlphaFold structure prediction, created 1 Aug 2025. UniProt accession: Q1D6H3.
Explore in 3D Color by confidence AlphaFold DB UniProt
The mean pLDDT of this model is 74.6 (confident overall). pLDDT is AlphaFold's per-residue confidence score from 0 to 100. In MolViewer, choose the B-factor color scheme to color the model by pLDDT, because AlphaFold stores it in the B-factor column.
| pLDDT band | Meaning | Share of residues |
|---|---|---|
| Above 90 | Very high: backbone and side chains are usually accurate | 43% |
| 70 to 90 | Confident: backbone generally right | 6% |
| 50 to 70 | Low: treat with caution | 32% |
| Below 50 | Very low: often disordered regions | 18% |
What pLDDT means and how to read it
Cargo protein of a type 1 encapsulin nanocompartment. May help nucleate Fe atoms in the interior of the encapsulin nanocompartment (Probable). Present in about 36 copies/encapsulin nanocompartment (PubMed:25024436)
Encapsulin nanocompartment
Compare the prediction with experimentally determined structures of the same protein:
| PDB ID | Method | Resolution | Chains and residues |
|---|---|---|---|
| 7S5C | X-ray | 1.86 Å | A/B/C/D/E/F/G/H/I/J=1-94 |
| 7S5K | X-ray | 1.95 Å | A/B/C/D/E/F/G/H/I/J=8-75 |
| 7S2T | EM | 3.45 Å | F/G/H=138-149 |
MolViewer loads the AlphaFold model straight from AlphaFold DB into your browser. Show it as a cartoon, color by pLDDT, measure distances and angles, and load a PDB structure next to it to compare.