Ig-like domain-containing protein (DKFZp686P15220) is a 472-residue protein from Homo sapiens. This is its AlphaFold structure prediction, created 1 Jun 2022. UniProt accession: Q6N089.
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The mean pLDDT of this model is 87.7 (confident overall). pLDDT is AlphaFold's per-residue confidence score from 0 to 100. In MolViewer, choose the B-factor color scheme to color the model by pLDDT, because AlphaFold stores it in the B-factor column.
| pLDDT band | Meaning | Share of residues |
|---|---|---|
| Above 90 | Very high: backbone and side chains are usually accurate | 66% |
| 70 to 90 | Confident: backbone generally right | 22% |
| 50 to 70 | Low: treat with caution | 7% |
| Below 50 | Very low: often disordered regions | 5% |
What pLDDT means and how to read it
Cell membrane, Secreted
Compare the prediction with experimentally determined structures of the same protein:
| PDB ID | Method | Resolution | Chains and residues |
|---|---|---|---|
| 4HPY | X-ray | 1.5 Å | H=20-247 |
| 5EWI | X-ray | 1.6 Å | H=20-247 |
| 4NUJ | X-ray | 1.83 Å | B=20-117, B=121-247 |
| 3QCU | X-ray | 1.98 Å | H/I=20-243 |
| 5VKK | X-ray | 2.01 Å | A/H=20-245 |
| 3QCT | X-ray | 2.15 Å | H=20-243 |
| 3MNV | X-ray | 2.4 Å | B/D=20-247 |
| 3QCV | X-ray | 2.51 Å | H/I=20-243 |
| 5XRQ | X-ray | 2.6 Å | A/H=20-245 |
| 2OQJ | X-ray | 2.8 Å | B/E/H/K=20-243 |
| 1U6A | X-ray | 2.81 Å | H=20-243 |
| 6V8Z | EM | 2.9 Å | D/J/P=20-245 |
| 5UG0 | X-ray | 3.4 Å | D=20-247 |
| 5WKO | X-ray | 3.49 Å | A/C/E/G/I/K=20-244 |
| 6DC3 | X-ray | 3.5 Å | H=20-245 |
| 5W42 | X-ray | 3.57 Å | H=20-245 |
| 5W1M | X-ray | 3.91 Å | B/D/F/H=21-245 |
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