Factor H binding protein variant B16_001 (fhbp) is a 255-residue protein from Neisseria meningitidis. This is its AlphaFold structure prediction, created 1 Jun 2022. UniProt accession: Q6VS06.
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The mean pLDDT of this model is 93.1 (very high overall). pLDDT is AlphaFold's per-residue confidence score from 0 to 100. In MolViewer, choose the B-factor color scheme to color the model by pLDDT, because AlphaFold stores it in the B-factor column.
| pLDDT band | Meaning | Share of residues |
|---|---|---|
| Above 90 | Very high: backbone and side chains are usually accurate | 88% |
| 70 to 90 | Confident: backbone generally right | 7% |
| 50 to 70 | Low: treat with caution | 2% |
| Below 50 | Very low: often disordered regions | 4% |
What pLDDT means and how to read it
Cell outer membrane
Compare the prediction with experimentally determined structures of the same protein:
| PDB ID | Method | Resolution | Chains and residues |
|---|---|---|---|
| 5NQY | X-ray | 2.6 Å | A=8-243, A=245-255 |
| 5NQP | X-ray | 2.86 Å | A/B/C=7-85, A/B/C=87-255 |
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