Structure of a fHbp(V1.4):PorA(P1.16) chimera. Fusion at fHbp position 309. Determined by X-ray diffraction at 2.6 Å resolution. Released 28 Feb 2018.
Explore 5NQY in 3D Show helices and sheets RCSB PDB PDBe
5NQY contains 8 α-helices and 21 β-strands across 1 chain. Residue ranges use author residue numbering, as in the PDB file, from PDBe. To see them in 3D, choose the Cartoon representation with Secondary structure coloring: helices, sheets and coils get different colors.
| Element | Residues | Length | Sheet |
|---|---|---|---|
| α-helix | 83-86 | 4 | |
| β-strand | 99-100 | 2 | 1 |
| β-strand | 110-114 | 5 | 2 |
| β-strand | 119-123 | 5 | 2 |
| α-helix | 126 | 1 | |
| β-strand | 127-128 | 2 | 1 |
| α-helix | 130-132 | 3 | |
| α-helix | 134 | 1 | |
| β-strand | 138-148 | 11 | 2 |
| β-strand | 153-165 | 13 | 2 |
| β-strand | 169-178 | 10 | 2 |
| β-strand | 179 | 1 | 3 |
| β-strand | 189 | 1 | 3 |
| β-strand | 193-201 | 9 | 2 |
| β-strand | 203 | 1 | 4 |
| α-helix | 204 | 1 | |
| β-strand | 205 | 1 | 5 |
| α-helix | 206-208 | 3 | |
| β-strand | 214-223 | 10 | 4 |
| β-strand | 226-236 | 11 | 4 |
| β-strand | 241-247 | 7 | 4 |
| α-helix | 252-254 | 3 | |
| β-strand | 257-265 | 9 | 4 |
| β-strand | 270 | 1 | 5 |
| β-strand | 271-278 | 8 | 4 |
| β-strand | 283-292 | 10 | 4 |
| β-strand | 298-308D | 15 | 4 |
| β-strand | 308J-320 | 16 | 4 |
| α-helix | 321-322 | 2 |
| Molecule | Chains | Type | Length | Organism | UniProt |
|---|---|---|---|---|---|
| Factor H binding protein variant B16_001,Major outer membrane protein P.IA,Factor H binding… | A | protein | 270 | Neisseria meningitidis, Neisseria meningitidis serogroup C | P13415 (AlphaFold model), Q6VS06 (AlphaFold model) |
>5NQY_1 Factor H binding protein variant B16_001,Major outer membrane protein P.IA,Factor H binding protein variant B16_001 (chains A) MVAADIGAGLADALTAPLDHKDKSLQSLTLDQSVRKNEKLKLAAQGAEKTYGNGDSLNTG KLKNDKVSRFDFIRQIEVDGQLITLESGEFQVYKQSHSALTALQTEQVQDSEHSGKMVAK RQFRIGDIAGEHTSFDKLPEGGRATYRGTAFGSDDASGKLTYTIDFAAKQGHGKIEHLKS PELNVDLAASDIKPDKKRHAVISGSVLYNQAEKGSYSLGIFGGQAQEVAGSAEVETAYYT KDTNNNLTLVPGIRHIGLAAKQLEHHHHHH
Structure-based design of chimeric antigens for multivalent protein vaccines. Hollingshead, S., Jongerius, I., Exley, R.M. et al. Nat Commun (2018) 9:1051-1051. DOI 10.1038/s41467-018-03146-7 · PubMed
Other PDB entries of the same protein (UniProt P13415 (AlphaFold model), which also has an AlphaFold model), best resolution first:
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