Ligand of Numb protein X 2 (LNX2) is a 690-residue protein from Homo sapiens. This is its AlphaFold structure prediction, created 1 Aug 2025. UniProt accession: Q8N448.
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The mean pLDDT of this model is 74.6 (confident overall). pLDDT is AlphaFold's per-residue confidence score from 0 to 100. In MolViewer, choose the B-factor color scheme to color the model by pLDDT, because AlphaFold stores it in the B-factor column.
| pLDDT band | Meaning | Share of residues |
|---|---|---|
| Above 90 | Very high: backbone and side chains are usually accurate | 35% |
| 70 to 90 | Confident: backbone generally right | 37% |
| 50 to 70 | Low: treat with caution | 5% |
| Below 50 | Very low: often disordered regions | 22% |
What pLDDT means and how to read it
Interacts with the phosphotyrosine interaction domain of NUMB
Compare the prediction with experimentally determined structures of the same protein:
| PDB ID | Method | Resolution | Chains and residues |
|---|---|---|---|
| 5E1Y | X-ray | 1.01 Å | A=336-425 |
| 5E21 | X-ray | 1.01 Å | A=336-425 |
| 2VWR | X-ray | 1.3 Å | A=336-425 |
| 5E11 | X-ray | 1.8 Å | A=336-425 |
| 5E22 | X-ray | 1.8 Å | A/B=336-425 |
| 5DIN | X-ray | 1.86 Å | A/B=20-147 |
| 7QCT | X-ray | 3.2 Å | A/B=334-426 |
MolViewer loads the AlphaFold model straight from AlphaFold DB into your browser. Show it as a cartoon, color by pLDDT, measure distances and angles, and load a PDB structure next to it to compare.