Programmed cell death protein 7 (PDCD7) is a 485-residue protein from Homo sapiens. This is its AlphaFold structure prediction, created 1 Aug 2025. UniProt accession: Q8N8D1.
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The mean pLDDT of this model is 76.4 (confident overall). pLDDT is AlphaFold's per-residue confidence score from 0 to 100. In MolViewer, choose the B-factor color scheme to color the model by pLDDT, because AlphaFold stores it in the B-factor column.
| pLDDT band | Meaning | Share of residues |
|---|---|---|
| Above 90 | Very high: backbone and side chains are usually accurate | 39% |
| 70 to 90 | Confident: backbone generally right | 23% |
| 50 to 70 | Low: treat with caution | 22% |
| Below 50 | Very low: often disordered regions | 16% |
What pLDDT means and how to read it
Promotes apoptosis when overexpressed
Interacts with RBM40. Component of the U11/U12 snRNPs that are part of the U12-type spliceosome
Nucleus
Compare the prediction with experimentally determined structures of the same protein:
| PDB ID | Method | Resolution | Chains and residues |
|---|---|---|---|
| 9GCM | EM | 3.1 Å | D=1-485 |
| 9GC0 | EM | 3.2 Å | D=1-485 |
| 8Y6O | EM | 3.38 Å | Z=1-485 |
| 8R7N | EM | 3.4 Å | D=1-485 |
| 9GBW | EM | 3.5 Å | D=1-485 |
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