Vacuolar protein sorting-associated protein 29 (Vps29) is a 182-residue protein from Mus musculus. This is its AlphaFold structure prediction, created 1 Aug 2025. UniProt accession: Q9QZ88.
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The mean pLDDT of this model is 96.3 (very high overall). pLDDT is AlphaFold's per-residue confidence score from 0 to 100. In MolViewer, choose the B-factor color scheme to color the model by pLDDT, because AlphaFold stores it in the B-factor column.
| pLDDT band | Meaning | Share of residues |
|---|---|---|
| Above 90 | Very high: backbone and side chains are usually accurate | 96% |
| 70 to 90 | Confident: backbone generally right | 4% |
| 50 to 70 | Low: treat with caution | 0% |
| Below 50 | Very low: often disordered regions | 0% |
What pLDDT means and how to read it
Component of the commander complex that is essential for endosomal recycling of transmembrane cargos; the commander complex is composed of the CCC subcomplex and the retriever subcomplex (By similarity). Component of the retriever complex, which is a heterotrimeric complex related to retromer cargo-selective complex (CSC) and essential for retromer-independent retrieval and recycling of numerous cargos such as integrin alpha-5/beta-1 (ITGA5:ITGB1) (By similarity). Component of the retromer cargo-selective complex (CSC). The CSC is believed to be the core functional component of retromer or respective retromer complex variants acting to prevent missorting of selected transmembrane cargo…
Component of the commander complex consisting of the CCC subcomplex and the retriever subcomplex (By similarity). Component of the heterotrimeric retriever complex formed by VPS26C, VPS29 and VPS35L; within the complex interacts with VPS35L (By similarity). Component of the heterotrimeric retromer cargo-selective complex (CSC), also described as vacuolar protein sorting subcomplex (VPS) formed…
Cytoplasm, Membrane, Endosome membrane
Compare the prediction with experimentally determined structures of the same protein:
| PDB ID | Method | Resolution | Chains and residues |
|---|---|---|---|
| 8FUD | X-ray | 1.68 Å | A/B=2-182 |
| 1Z2W | X-ray | 2.0 Å | A/B=1-182 |
| 8TTD | X-ray | 2.01 Å | A=2-182 |
| 3PSN | X-ray | 2.2 Å | A/B=1-182 |
| 1Z2X | X-ray | 2.22 Å | A/B=1-182 |
| 9O9I | X-ray | 2.35 Å | A=2-182 |
| 3PSO | X-ray | 3.0 Å | A/B=1-182 |
| 8TTC | X-ray | 3.01 Å | A/C=1-182 |
| 8TTA | X-ray | 3.46 Å | A/C=1-182 |
| 6VAB | EM | 4.9 Å | A/C=1-182 |
| 7U6F | EM | 4.9 Å | B4=1-182 |
| 6VAC | EM | 5.7 Å | C=1-182 |
| 6TL0 | NMR | A=1-182 |
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