Methotrexate 3D structure

Methotrexate (also called Rheumatrex, Amethopterin) has the formula C20H22N8O5 and a molar mass of 454.4 g/mol. The model above is PubChem's computed 3D conformer: drag to rotate, scroll to zoom, and use the measurement tools to read bond lengths and angles.

Formula
C20H22N8O5
Molar mass
454.4 g/mol
PubChem CID
126941
Heavy atoms
33
Category
Common drugs

Explore in 3D Space-filling model PubChem

Identifiers

IUPAC name(2S)-2-[[4-[(2,4-diaminopteridin-6-yl)methyl-methylamino]benzoyl]amino]pentanedioic acid
SMILESCN(CC1=CN=C2C(=N1)C(=NC(=N2)N)N)C3=CC=C(C=C3)C(=O)N[C@@H](CCC(=O)O)C(=O)O
PubChem CID126941
Other namesRheumatrex, Amethopterin, Metatrexan, Hdmtx, Ledertrexate

How to read the 3D model

Atoms use the standard CPK colors: carbon gray, hydrogen white, oxygen red, nitrogen blue, sulfur yellow. Switch to Spacefill to see the molecule's overall shape and size, or Stick for a clear view of the bonds. Click two atoms in distance mode to measure a bond length in ångströms.

3D coordinates are PubChem's computed conformer, one low-energy shape of the molecule. Flexible molecules can take many other shapes.

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