Shikonin 3D structure

Shikonin (also called Isoarnebin 4, Shikonine) has the formula C16H16O5 and a molar mass of 288.29 g/mol. The model above is PubChem's computed 3D conformer: drag to rotate, scroll to zoom, and use the measurement tools to read bond lengths and angles.

Formula
C16H16O5
Molar mass
288.29 g/mol
PubChem CID
479503
Heavy atoms
21
Category
Dyes and pigments

Explore in 3D Space-filling model PubChem

Identifiers

IUPAC name5,8-dihydroxy-2-[(1R)-1-hydroxy-4-methylpent-3-enyl]naphthalene-1,4-dione
SMILESCC(=CC[C@H](C1=CC(=O)C2=C(C=CC(=C2C1=O)O)O)O)C
PubChem CID479503
Other namesIsoarnebin 4, Shikonine, Tokyo Violet, Shikonin S, beta-alkannin

How to read the 3D model

Atoms use the standard CPK colors: carbon gray, hydrogen white, oxygen red, nitrogen blue, sulfur yellow. Switch to Spacefill to see the molecule's overall shape and size, or Stick for a clear view of the bonds. Click two atoms in distance mode to measure a bond length in ångströms.

3D coordinates are PubChem's computed conformer, one low-energy shape of the molecule. Flexible molecules can take many other shapes.

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