1DQB: Thrombomodulin EGF(4-5)
NMR structure of thrombomodulin EGF(4-5). Determined by solution NMR. Released 6 Mar 2000.
- Method
- Solution NMR
- Organism
- Homo sapiens
- Chains
- 1
- Atoms
- 669
- Mol. weight
- 9.74 kDa
- Ligands
- NAG
- Released
- 6 Mar 2000
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RCSB PDB
PDBe
Molecules and chains
| Molecule | Chains | Type | Length | Organism | UniProt |
|---|
| Thrombomodulin | A | protein | 83 | Homo sapiens | P07204 (AlphaFold model) |
Sequence of entity 1 (A), FASTA
>1DQB_1 THROMBOMODULIN (chains A)
HMEPVDPCFRANCEYQCQPLNQTSYLCVCAEGFAPIPHEPHRCQMFCNQTACPADCDPNT
QASCECPEGYILDDGFICTDIDE
Ligands and cofactors
| ID | Name | Formula | Copies |
|---|
| NAG | 2-acetamido-2-deoxy-beta-D-glucopyranose | C8 H15 N O6 | 2 |
Primary citation
Solution structure of the smallest cofactor-active fragment of thrombomodulin. Wood, M.J., Sampoli-Benitez, B.A., Komives, E.A. Nat Struct Biol (2000) 7:200-204. DOI 10.1038/73302 · PubMed
Other PDB entries of the same protein (UniProt P07204 (AlphaFold model), which also has an AlphaFold model), best resolution first:
- 1DX5 2.3 Å, Crystal structure of the thrombin-thrombomodulin complex
- 5TO3 2.34 Å, Crystal structure of thrombin mutant W215A/E217A fused to EGF456 of thrombomodulin via a…
- 3GIS 2.4 Å, Crystal Structure of Na-free Thrombin in Complex with Thrombomodulin
- 1HLT 3.0 Å, The structure of a nonadecapeptide of the fifth egf domain of thrombomodulin complexed…
- 7T4R 3.3 Å, CryoEM structure of the HCMV Pentamer gH/gL/UL128/UL130/UL131A in complex with THBD and…
- 1ADX Fifth egf-like domain of thrombomodulin (TMEGF5), NMR, 14 structures
- 1EGT Thrombin-bound structure of an egf subdomain from human thrombomodulin determined by…
- 1FGD Epidermal growth factor (EGF) subdomain of human thrombomodulin (NMR, 11 structures)
- 1FGE Epidermal growth factor (EGF) subdomain of human thrombomodulin (NMR, 14 structures)
- 1TMR The structure of a 19 residue fragment from the C-loop of the fourth epidermal growth…
- 1ZAQ Fourth egf-like domain of thrombomodulin, NMR, 12 structures
- 2ADX Fifth egf-like domain of thrombomodulin (TMEGF5), NMR, minimized average structure
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