1NSD: Neuraminidase

Influenza B virus neuraminidase can synthesize its own inhibitor. Determined by X-ray diffraction at 1.8 Å resolution. Released 31 Oct 1993.

Method: X-ray diffraction
Resolution: 1.8 Å
Organism: Influenza B virus (STRAIN B/BEIJING/1/87)
Chains: 2
Atoms: 6,649
Mol. weight: 88 kDa
Ligands: NAG, DAN, CA
Released: 31 Oct 1993

Explore 1NSD in 3D Show helices and sheets RCSB PDB PDBe

Secondary structure: helices and β-sheets

1NSD contains 15 α-helices and 66 β-strands across 2 chains. Residue ranges use author residue numbering, as in the PDB file, from PDBe. To see them in 3D, choose the Cartoon representation with Secondary structure coloring: helices, sheets and coils get different colors.

Chain A: 7 helices, 32 β-strands

Element	Residues	Length	Sheet
α-helix	77-80	4
α-helix	84	1
β-strand	85	1	1
α-helix	86	1
β-strand	91-97	7	1
α-helix	99-102	4
β-strand	111	1	2
β-strand	112-121	10	3
β-strand	126-136	11	3
β-strand	154-159	6	3
β-strand	160	1	4
β-strand	162	1	4
β-strand	165	1	2
β-strand	170-174	5	3
β-strand	177-182	6	5
β-strand	187-193	7	5
α-helix	196-198	3
β-strand	200-205	6	5
β-strand	208-214	7	5
β-strand	222-223	2	6
β-strand	229-231	3	6
β-strand	234-242	9	6
β-strand	248-256	9	6
β-strand	259-264	6	6
β-strand	267-268	2	7
β-strand	272	1	6
β-strand	274-280	7	7
β-strand	285-291	7	7
α-helix	299	1
β-strand	300-305	6	7
β-strand	310-315	6	7
β-strand	351-355	5	8
β-strand	360-366	7	8
β-strand	374-382	9	8
α-helix	391-393	3
β-strand	394-405	12	8
β-strand	409-415	7	1
β-strand	420-430	11	1
β-strand	439-447	9	1

Chain B: 8 helices, 34 β-strands

Element	Residues	Length	Sheet
α-helix	77-80	4
α-helix	84	1
β-strand	85	1	9
α-helix	86	1
β-strand	91-97	7	9
α-helix	99-102	4
β-strand	111	1	10
β-strand	112-121	10	11
β-strand	126-136	11	11
β-strand	154-159	6	11
β-strand	160	1	12
β-strand	162	1	12
β-strand	165	1	10
β-strand	170-174	5	11
β-strand	177-182	6	13
β-strand	187-193	7	13
α-helix	196-198	3
β-strand	200-205	6	13
β-strand	208-214	7	13
β-strand	222-223	2	14
β-strand	229-231	3	14
β-strand	234-240	7	14
β-strand	242	1	15
β-strand	248	1	15
β-strand	251-256	6	14
β-strand	259-264	6	14
β-strand	267-268	2	16
β-strand	272	1	15
β-strand	274-280	7	16
β-strand	285-291	7	16
α-helix	299	1
β-strand	300-305	6	16
β-strand	310-315	6	16
α-helix	327	1
β-strand	351-355	5	17
β-strand	360-366	7	17
β-strand	374-382	9	17
α-helix	392-393	2
β-strand	394-405	12	17
β-strand	409-415	7	9
β-strand	420-431	12	9
β-strand	438-447	10	9

Molecules and chains

Molecule	Chains	Type	Length	Organism	UniProt
Neuraminidase	A, B	protein	390	Influenza B virus (STRAIN B/BEIJING/1/87)	P27907

Sequence of entity 1 (A, B), FASTA

>1NSD_1 NEURAMINIDASE (chains A, B)
EPEWTYPRLSCQGSTFQKALLISPHRFGEARGNSAPLIIREPFIACGPKECKHFALTHYA
AQPGGYYNGTREDRNKLRHLISVKLGKIPTVENSIFHMAAWSGSACHDGREWTYIGVDGP
DSNALIKIKYGEAYTDTYHSYANNILRTQESACNCIGGDCYLMITDGSASGISKCRFLKI
REGRIIKEIFPTGRVEHTEECTCGFASNKTIECACRDNSYTAKRPFVKLNVETDTAEIRL
MCTETYLDTPRPDDGSITGPCESNGDKGRGGIKGGFVHQRMASKIGRWYSRTMSKTERMG
MELYVRYDGDPWTDSDALAHSGVMVSMKEPGWYSFGFEIKDKKCDVPCIGIEMVHDGGKK
TWHSAATAIYCLMGSGQLLWDTVTGVDMAL

Ligands and cofactors

ID	Name	Formula	Copies
NAG	2-acetamido-2-deoxy-beta-D-glucopyranose	C8 H15 N O6	2
DAN	2-deoxy-2,3-dehydro-N-acetyl-neuraminic acid	C11 H17 N O8	2
CA	Calcium ion	Ca	3

Primary citation

Influenza B virus neuraminidase can synthesize its own inhibitor. Burmeister, W.P., Henrissat, B., Bosso, C. et al. Structure (1993) 1:19-26. DOI 10.1016/0969-2126(93)90005-2 · PubMed

Other PDB entries of the same protein (UniProt P27907), best resolution first:

1NSC 1.7 Å, Influenza B virus neuraminidase can synthesize its own inhibitor
1A4Q 1.9 Å, Influenza virus B/BEIJING/1/87 neuraminidase complexed with…
1A4G 2.2 Å, Influenza virus B/BEIJING/1/87 neuraminidase complexed with zanamivir
1NSB 2.2 Å, The 2.2 Å resolution crystal structure of influenza B neuraminidase and its complex with…

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