1O06: Vps27p Ubiquitin Interacting Motif

Crystal structure of the Vps27p Ubiquitin Interacting Motif (UIM). Determined by X-ray diffraction at 1.45 Å resolution. Released 22 Jul 2003.

Method: X-ray diffraction
Resolution: 1.45 Å
Chains: 1
Atoms: 205
Mol. weight: 2.44 kDa
Ligands: ZN
Released: 22 Jul 2003

Explore 1O06 in 3D Show helices and sheets RCSB PDB PDBe

Secondary structure: helices and β-sheets

1O06 contains 1 α-helix and 0 β-strands across 1 chain. Residue ranges use author residue numbering, as in the PDB file, from PDBe. To see them in 3D, choose the Cartoon representation with Secondary structure coloring: helices, sheets and coils get different colors.

Chain A: 1 helix, 0 β-strands

Element	Residues	Length	Sheet
α-helix	4-18	15

Molecules and chains

Molecule	Chains	Type	Length	Organism	UniProt
Vacuolar protein sorting-associated protein VPS27	A	protein	20		P40343 (AlphaFold model)

Sequence of entity 1 (A), FASTA

>1O06_1 Vacuolar protein sorting-associated protein VPS27 (chains A)
EEDPDLKAAIQESLREAEEA

Ligands and cofactors

ID	Name	Formula	Copies
ZN	Zinc ion	Zn	3

Primary citation

Structure and ubiquitin binding of the ubiquitin-interacting motif. Fisher, R.D., Wang, B., Alam, S.L. et al. J Biol Chem (2003) 278:28976-28984. DOI 10.1074/jbc.M302596200 · PubMed

Other PDB entries of the same protein (UniProt P40343 (AlphaFold model), which also has an AlphaFold model), best resolution first:

1VFY 1.15 Å, Phosphatidylinositol-3-phosphate binding fyve domain of VPS27P protein from…
3R42 1.87 Å, Crystal structure of the yeast vps23 UEV domain in complex with a vps27 PSDP peptide
6NJG 2.35 Å, Ubiquitin Variant in Complex with Ubiquitin Interacting Motif
2PJW 3.01 Å, The Vps27/Hse1 complex is a GAT domain-based scaffold for ubiquitin-dependent sorting
1Q0V Solution Structure of Tandem UIMs of Vps27
1Q0W Solution structure of Vps27 amino-terminal UIM-ubiquitin complex
2KDI Solution structure of a Ubiquitin/UIM fusion protein

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