1OTU: Voltage-gated ClC-type chloride channel eriC

Structure of the Escherichia coli ClC Chloride channel E148Q mutant and Fab Complex. Determined by X-ray diffraction at 3.3 Å resolution. Released 15 Apr 2003.

Method: X-ray diffraction
Resolution: 3.3 Å
Organisms: Escherichia coli, Mus musculus
Chains: 6
Atoms: 13,229
Mol. weight: 193.35 kDa
Released: 15 Apr 2003

Explore 1OTU in 3D Show helices and sheets RCSB PDB PDBe

Secondary structure: helices and β-sheets

1OTU contains 66 α-helices and 91 β-strands across 6 chains. Residue ranges use author residue numbering, as in the PDB file, from PDBe. To see them in 3D, choose the Cartoon representation with Secondary structure coloring: helices, sheets and coils get different colors.

Chain A: 23 helices, 4 β-strands

Element	Residues	Length	Sheet
α-helix	18-25	8
α-helix	33-63	31
α-helix	69-71	3
α-helix	75-98	24
β-strand	106	1	1
α-helix	109-117	9
α-helix	124-141	18
β-strand	146	1	2
α-helix	148-165	18
α-helix	172-190	19
α-helix	193-200	8
α-helix	215-233	19
α-helix	249-251	3
α-helix	252-282	31
α-helix	288-305	18
α-helix	310-312	3
α-helix	319-325	7
α-helix	330-348	19
β-strand	353	1	1
β-strand	355	1	2
α-helix	357-378	22
α-helix	380-382	3
α-helix	386-392	7
α-helix	405-416	12
α-helix	419-421	3
α-helix	422-437	16
α-helix	444-454	11

Chain B: 23 helices, 4 β-strands

Element	Residues	Length	Sheet
α-helix	19-25	7
α-helix	33-63	31
α-helix	69-71	3
α-helix	75-98	24
β-strand	106	1	3
α-helix	109-117	9
α-helix	124-141	18
β-strand	146	1	4
α-helix	148-165	18
α-helix	172-190	19
α-helix	193-200	8
α-helix	215-233	19
α-helix	249-251	3
α-helix	252-278	27
α-helix	288-305	18
α-helix	310-312	3
α-helix	319-325	7
α-helix	330-348	19
β-strand	353	1	3
β-strand	355	1	4
α-helix	357-378	22
α-helix	380-382	3
α-helix	386-392	7
α-helix	405-416	12
α-helix	419-421	3
α-helix	422-437	16
α-helix	444-454	11

Chain C: 4 helices, 21 β-strands

Element	Residues	Length	Sheet
β-strand	3-7	5	5
β-strand	10-12	3	6
β-strand	17-25	9	5
β-strand	33-39	7	6
β-strand	45-51	7	6
β-strand	58-60	3	6
β-strand	68-73	6	5
β-strand	78-84	7	5
α-helix	88-90	3
β-strand	92-100	9	6
β-strand	107-110	4	6
β-strand	115-119	5	6
β-strand	125	1	7
β-strand	128-131	4	8
β-strand	143-153	11	8
β-strand	154	1	7
β-strand	159-162	4	9
α-helix	163-165	3
β-strand	171-173	3	8
α-helix	174-176	3
β-strand	177-178	2	8
β-strand	183-192	10	8
α-helix	193-195	3
β-strand	202-207	6	9
β-strand	212-217	6	9

Chain D: 7 helices, 21 β-strands

Element	Residues	Length	Sheet
β-strand	5-6	2	10
β-strand	10-13	4	11
β-strand	19-24	6	10
β-strand	33-37	5	11
β-strand	44-48	5	11
β-strand	52-53	2	11
β-strand	61-66	6	10
β-strand	69-74	6	10
α-helix	79-81	3
β-strand	83-89	7	11
α-helix	95	1
β-strand	96-97	2	11
β-strand	101-105	5	11
β-strand	110	1	12
α-helix	111-112	2
β-strand	113-116	4	13
α-helix	118-120	3
α-helix	121-124	4
β-strand	128-138	11	13
β-strand	139	1	12
β-strand	143-149	7	14
β-strand	158-162	5	13
α-helix	163-164	2
β-strand	172-181	10	13
α-helix	182-186	5
β-strand	190-197	8	14
β-strand	204-205	2	14
β-strand	208-209	2	14

Chain E: 4 helices, 21 β-strands

Element	Residues	Length	Sheet
β-strand	3-7	5	15
β-strand	10-12	3	16
β-strand	18-25	8	15
β-strand	33-39	7	16
β-strand	45-51	7	16
β-strand	58-60	3	16
β-strand	68-73	6	15
β-strand	78-83	6	15
α-helix	88-90	3
β-strand	92-100	9	16
β-strand	107-108	2	16
β-strand	116-119	4	16
β-strand	125	1	17
β-strand	128-131	4	18
β-strand	143-153	11	18
β-strand	154	1	17
β-strand	159-162	4	19
α-helix	163-165	3
β-strand	171-173	3	18
α-helix	174-176	3
β-strand	177-178	2	18
β-strand	183-192	10	18
α-helix	193-195	3
β-strand	202-207	6	19
β-strand	212-217	6	19

Chain F: 5 helices, 20 β-strands

Element	Residues	Length	Sheet
β-strand	4-6	3	20
β-strand	10-13	4	21
β-strand	19-25	7	20
β-strand	33-37	5	21
β-strand	44-45	2	21
β-strand	47-48	2	22
β-strand	52-53	2	22
β-strand	61-66	6	20
β-strand	69-74	6	20
α-helix	79-81	3
β-strand	84-89	6	21
α-helix	95	1
β-strand	96-97	2	21
β-strand	101-105	5	21
β-strand	114-117	4	23
α-helix	121-124	4
β-strand	128-138	11	23
β-strand	143-149	7	24
β-strand	158-162	5	23
α-helix	163-164	2
β-strand	172-181	10	23
α-helix	182-186	5
β-strand	190-197	8	24
β-strand	204-205	2	24
β-strand	208-209	2	24

Molecules and chains

Molecule	Chains	Type	Length	Organism	UniProt
Voltage-gated ClC-type chloride channel eriC	A, B	protein	465	Escherichia coli	P37019 (AlphaFold model)
Fab fragment (Heavy chain)	C, E	protein	222	Mus musculus	P01808 (AlphaFold model)
Fab fragment (Light chain)	D, F	protein	211	Mus musculus	P01837 (AlphaFold model)

Sequence of entity 1 (A, B), FASTA

>1OTU_1 Voltage-gated ClC-type chloride channel eriC (chains A, B)
MKTDTPSLETPQAARLRRRQLIRQLLERDKTPLAILFMAAVVGTLVGLAAVAFDKGVAWL
QNQRMGALVHTADNYPLLLTVAFLCSAVLAMFGYFLVRKYAPEAGGSGIPEIEGALEDQR
PVRWWRVLPVKFFGGLGTLGGGMVLGRQGPTVQIGGNIGRMVLDIFRLKGDEARHTLLAT
GAAAGLAAAFNAPLAGILFIIEEMRPQFRYTLISIKAVFIGVIMSTIMYRIFNHEVALID
VGKLSDAPLNTLWLYLILGIIFGIFGPIFNKWVLGMQDLLHRVHGGNITKWVLMGGAIGG
LCGLLGFVAPATSGGGFNLIPIATAGNFSMGMLVFIFVARVITTLLCFSSGAPGGIFAPM
LALGTVLGTAFGMVAVELFPQYHLEAGTFAIAGMGALLAASIRAPLTGIILVLEMTDNYQ
LILPMIITGLGATLLAQFTGGKPLYSAILARTLAKQEAEQLARSK

Sequence of entity 2 (C, E), FASTA

>1OTU_2 Fab fragment (Heavy chain) (chains C, E)
EVRLLESGGGLVQPGGSLKLSCAASGFDYSRYWMSWVRQAPGKGLKWIGEINPVSSTINY
TPSLKDKFIISRDNAKDTLYLQISKVRSEDTALYYCARLYYGYGYWYFDVWGAGTTVTVS
SAKTTPPSVYPLAPGSAAAAASMVTLGCLVKGYFPEPVTVTWNSGSLAAGVHTFPAVLQA
ALYTLSSSVTVPSSSWPSETVTCNVAHPASSTKVDKKIVPRA

Sequence of entity 3 (D, F), FASTA

>1OTU_3 Fab fragment (Light chain) (chains D, F)
DIVLTQSPAIMSAAPGDKVTMTCSASSSVSYIHWYQQKSGTSPKRWIYDTSKLTSGVPVR
FSGSGSGTSYSLTINTMEAEDAATYYCQQWSSHPQTFGGGTKLEILRADAAPTVSIFPPS
SEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTL
TKDEYERHNSYTCEATHKTSTSPIVKSFNRA

Primary citation

Gating the Selectivity Filter in ClC Chloride Channels. Dutzler, R., Campbell, E.B., MacKinnon, R. Science (2003) 300:108-112. DOI 10.1126/science.1082708 · PubMed

Other PDB entries of the same protein (UniProt P37019 (AlphaFold model), which also has an AlphaFold model), best resolution first:

4ENE 2.4 Å, Structure of the N- and C-terminal trimmed ClC-ec1 Cl-/H+ antiporter and Fab Complex
1OTS 2.51 Å, Structure of the Escherichia coli ClC Chloride channel and Fab Complex
8GA1 2.6 Å, CLC-ec1 R230C/L249C/C85A at pH 4.5 100mM Cl Swap
8GA5 2.6 Å, CLC-ec1 L25C/A450C/C85A at pH 4.5 100mM Cl Intermediate
6V2J 2.62 Å, Crystal structure of ClC-ec1 triple mutant (E113Q, E148Q, E203Q)
6ADB 2.69 Å, Crystal structure of the E148N mutant CLC-ec1 in 20mM bromide
3DET 2.8 Å, Structure of the E148A, Y445A doubly ungated mutant of E.coli CLC_Ec1, Cl-/H+ antiporter
4KKL 2.85 Å, Structure of the E148A mutant of CLC-ec1 delta NC construct in 100mM fluoride
4KK8 2.86 Å, Structure of the E148Q mutant of CLC-ec1 deltaNC construct in 100mM fluoride
4KJQ 2.88 Å, Structure of the CLC-ec1 deltaNC construct in 100mM fluoride
3EJZ 2.9 Å, Structure of E203V mutant E.coli Cl-/H+ exchanger, CLC-ec1
7CVT 2.9 Å, Crystal structure of the C85A/L194A/H234C mutant CLC-ec1 with Fab fragment

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