1TWF: RNA polymerase II

Name: PDB 1TWF: RNA polymerase II complexed with UTP at 2.3 A resolution
Published: 2004-11-16
License: https://creativecommons.org/publicdomain/zero/1.0/
Keywords: transcription

RNA polymerase II complexed with UTP at 2.3 A resolution. Determined by X-ray diffraction at 2.3 Å resolution. Released 16 Nov 2004.

Method: X-ray diffraction
Resolution: 2.3 Å
Organism: Saccharomyces cerevisiae
Chains: 10
Atoms: 28,318
Mol. weight: 470.74 kDa
Ligands: UTP, MN, ZN
Released: 16 Nov 2004

Explore 1TWF in 3D Show helices and sheets RCSB PDB PDBe

Secondary structure: helices and β-sheets

1TWF contains 164 α-helices and 202 β-strands across 10 chains. Residue ranges use author residue numbering, as in the PDB file, from PDBe. To see them in 3D, choose the Cartoon representation with Secondary structure coloring: helices, sheets and coils get different colors.

Chain A: 71 helices, 68 β-strands

Element	Residues	Length	Sheet
α-helix	10	1
β-strand	11	1	1
β-strand	16-18	3	2
β-strand	21	1	3
α-helix	24-29	6
β-strand	84-91	8	4
α-helix	93-95	3
α-helix	96-105	10
β-strand	106	1	5
β-strand	113	1	5
α-helix	120-126	7
α-helix	131-142	12
β-strand	147	1	6
β-strand	151-152	2	7
β-strand	162-163	2	7
β-strand	170	1	6
β-strand	175-176	2	8
β-strand	181-185	5	8
β-strand	198-202	5	8
α-helix	203	1
α-helix	204-211	8
α-helix	216-221	6
β-strand	225	1	9
β-strand	229	1	9
α-helix	231-234	4
β-strand	235-239	5	4
α-helix	261-280	20
α-helix	286-304	19
β-strand	308	1	10
β-strand	310	1	10
α-helix	338-340	3
β-strand	348-355	8	11
β-strand	363-367	5	11
α-helix	368-371	4
β-strand	375-379	5	12
α-helix	385-394	10
β-strand	402-406	5	12
β-strand	412-414	3	12
β-strand	431-435	5	12
α-helix	436	1
β-strand	441-445	5	11
α-helix	452-454	3
β-strand	455-463	9	11
β-strand	468-470	3	11
α-helix	472-474	3
α-helix	475-478	4
β-strand	486-490	5	11
α-helix	495-500	6
α-helix	501-505	5
β-strand	506	1	11
α-helix	507-510	4
β-strand	512-513	2	13
β-strand	518-519	2	13
α-helix	525-535	11
β-strand	540-542	3	14
α-helix	543-552	10
α-helix	560-563	4
β-strand	565	1	14
β-strand	571-573	3	14
α-helix	574-581	8
α-helix	583	1
β-strand	588-590	3	15
β-strand	605-608	4	15
β-strand	611-614	4	15
α-helix	619-622	4
α-helix	629-637	9
α-helix	639-658	20
β-strand	662	1	16
α-helix	666-669	4
α-helix	673-699	27
α-helix	704-705	2
α-helix	710-736	27
α-helix	742-749	8
α-helix	755-762	8
β-strand	766-767	2	17
β-strand	770	1	18
β-strand	773	1	18
α-helix	775-776	2
β-strand	779	1	19
β-strand	782	1	19
β-strand	799-800	2	17
α-helix	810-845	36
β-strand	849-850	2	20
β-strand	856-857	2	20
β-strand	863-865	3	20
α-helix	868-870	3
β-strand	873	1	21
α-helix	875-877	3
β-strand	878-882	5	22
α-helix	884-886	3
α-helix	890-897	8
β-strand	913	1	23
α-helix	916-919	4
α-helix	923-946	24
β-strand	953-957	5	22
α-helix	960-970	11
β-strand	979	1	23
α-helix	983-994	12
α-helix	1005-1013	9
α-helix	1016-1025	10
α-helix	1028-1029	2
α-helix	1030-1034	5
α-helix	1039-1056	18
β-strand	1057	1	21
α-helix	1058-1059	2
α-helix	1064-1076	13
α-helix	1097-1104	8
β-strand	1115-1119	5	24
β-strand	1120	1	25
α-helix	1121	1
α-helix	1128-1138	11
β-strand	1141-1142	2	26
α-helix	1143-1145	3
β-strand	1147-1154	8	27
α-helix	1164-1166	3
α-helix	1167-1171	5
β-strand	1191-1197	7	27
α-helix	1199-1204	6
α-helix	1209-1220	12
α-helix	1221-1223	3
β-strand	1224-1228	5	27
β-strand	1237-1242	6	27
α-helix	1258-1265	8
α-helix	1266-1270	5
β-strand	1272-1274	3	26
β-strand	1282-1292	11	24
β-strand	1298-1309	12	24
α-helix	1313-1316	4
β-strand	1322	1	25
β-strand	1328	1	24
α-helix	1332-1339	8
α-helix	1341-1357	17
α-helix	1365-1374	10
β-strand	1378	1	28
α-helix	1406-1415	10
β-strand	1418-1419	2	2
α-helix	1424-1429	6
α-helix	1437-1439	3
β-strand	1442-1445	4	29

Chain B: 51 helices, 74 β-strands

Element	Residues	Length	Sheet
α-helix	29-41	13
α-helix	45-53	9
α-helix	54-58	5
α-helix	59-64	6
β-strand	68	1	30
β-strand	91-92	2	30
β-strand	96-100	5	31
β-strand	101-102	2	32
β-strand	110-111	2	32
α-helix	114-119	6
β-strand	125-129	5	31
β-strand	132-133	2	30
β-strand	166-171	6	31
α-helix	172-173	2
α-helix	180-182	3
α-helix	186-191	6
β-strand	203-205	3	33
β-strand	208-212	5	33
α-helix	213	1
β-strand	214-218	5	34
β-strand	224-227	4	35
β-strand	234-241	8	35
β-strand	253-259	7	35
β-strand	269-272	4	35
α-helix	279	1
β-strand	280-281	2	35
α-helix	282-288	7
α-helix	294-301	8
α-helix	308-320	13
α-helix	327-336	10
α-helix	345-354	10
α-helix	355-359	5
α-helix	371-389	19
α-helix	401-403	3
β-strand	404-407	4	34
α-helix	409-433	25
α-helix	451-463	13
β-strand	480-482	3	33
α-helix	483-484	2
α-helix	488-495	8
β-strand	497-499	3	34
α-helix	516-518	3
β-strand	522	1	36
α-helix	530-532	3
β-strand	533	1	34
β-strand	536-538	3	34
β-strand	539	1	36
β-strand	544-545	2	37
α-helix	552-560	9
α-helix	563	1
β-strand	564-565	2	38
α-helix	566-568	3
α-helix	571-573	3
α-helix	577	1
β-strand	578-582	5	38
β-strand	585-590	6	38
α-helix	593-606	14
β-strand	614-618	5	38
β-strand	623-627	5	38
β-strand	633-639	7	37
β-strand	640-641	2	39
β-strand	650-651	2	39
α-helix	655-666	12
α-helix	681-686	6
β-strand	690-694	5	37
α-helix	695-698	4
β-strand	703-704	2	37
α-helix	707-710	4
α-helix	728-729	2
β-strand	740-741	2	37
α-helix	745-748	4
α-helix	753-755	3
α-helix	759-761	3
α-helix	764-773	10
α-helix	774-776	3
β-strand	777	1	40
β-strand	779	1	41
β-strand	792-796	5	41
β-strand	800	1	42
β-strand	804-805	2	43
α-helix	809-812	4
β-strand	821-827	7	44
β-strand	829	1	16
β-strand	838-842	5	44
α-helix	843-847	5
β-strand	853-861	9	41
β-strand	873-874	2	45
β-strand	884	1	46
α-helix	890-892	3
β-strand	898	1	47
β-strand	904-905	2	41
β-strand	910-912	3	47
β-strand	914-915	2	45
β-strand	935	1	46
β-strand	936	1	45
β-strand	939-940	2	47
α-helix	941-942	2
β-strand	947-956	10	41
β-strand	962-972	11	41
β-strand	979-981	3	44
β-strand	987-994	8	44
β-strand	1001-1002	2	48
β-strand	1010-1012	3	44
α-helix	1014-1016	3
α-helix	1023-1038	16
β-strand	1042-1043	2	43
α-helix	1052-1060	9
β-strand	1069-1070	2	44
β-strand	1072-1073	2	48
β-strand	1080	1	48
β-strand	1085-1094	10	44
β-strand	1095	1	40
α-helix	1099-1101	3
β-strand	1104-1106	3	11
α-helix	1132-1141	10
α-helix	1144-1151	8
β-strand	1159-1163	5	1
β-strand	1172-1174	3	49
β-strand	1179-1181	3	49
β-strand	1182	1	50
β-strand	1187	1	50
β-strand	1191-1195	5	1
α-helix	1198-1209	12
β-strand	1212	1	3
β-strand	1215-1217	3	2

Chain C: 12 helices, 14 β-strands

Element	Residues	Length	Sheet
β-strand	7	1	51
β-strand	17-18	2	52
β-strand	21-22	2	52
β-strand	23	1	51
α-helix	27-39	13
β-strand	43-54	12	53
α-helix	60-68	9
β-strand	72-74	3	54
α-helix	77-79	3
β-strand	96-104	9	53
α-helix	110	1
β-strand	111-114	4	55
α-helix	115-117	3
β-strand	118-120	3	53
β-strand	129-132	4	54
α-helix	133	1
β-strand	143-147	5	55
β-strand	152-162	11	53
α-helix	168-170	3
β-strand	173-180	8	52
α-helix	197-200	4
α-helix	202-204	3
α-helix	205-207	3
α-helix	211-214	4
β-strand	228-234	7	52
α-helix	240-265	26

Chain E: 13 helices, 14 β-strands

Element	Residues	Length	Sheet
α-helix	3-26	24
β-strand	28	1	56
α-helix	32-35	4
α-helix	39-45	7
β-strand	47	1	57
β-strand	53	1	57
α-helix	55-57	3
β-strand	60-62	3	58
β-strand	64	1	56
α-helix	66-69	4
β-strand	78-82	5	58
β-strand	87-88	2	59
α-helix	90-102	13
β-strand	107-112	6	58
β-strand	115-116	2	59
α-helix	118-121	4
β-strand	131-136	6	58
α-helix	137-140	4
α-helix	144-146	3
β-strand	152-155	4	28
α-helix	156-157	2
α-helix	158-168	11
α-helix	172-174	3
β-strand	177-178	2	28
α-helix	183-187	5
β-strand	195-201	7	28
β-strand	207-214	8	28

Chain F: 3 helices, 4 β-strands

Element	Residues	Length	Sheet
β-strand	84	1	60
α-helix	85-86	2
α-helix	87-102	16
α-helix	117-126	10
β-strand	132-137	6	29
β-strand	143-147	5	29
β-strand	152	1	60

Chain H: 1 helix, 8 β-strands

Element	Residues	Length	Sheet
β-strand	7-16	10	14
β-strand	23-30	8	14
β-strand	37-43	7	14
α-helix	44-46	3
β-strand	54-58	5	14
β-strand	95-101	7	14
β-strand	112-118	7	14
β-strand	121-127	7	14
β-strand	140-145	6	14

Chain I: 3 helices, 9 β-strands

Element	Residues	Length	Sheet
β-strand	6	1	61
α-helix	12	1
β-strand	13	1	61
α-helix	14	1
β-strand	15-19	5	62
β-strand	24-28	5	62
β-strand	35-37	3	62
β-strand	42-47	6	27
α-helix	62-64	3
β-strand	83-87	5	63
β-strand	99-103	5	63
β-strand	109-111	3	63

Chain J: 4 helices, 3 β-strands

Element	Residues	Length	Sheet
β-strand	6	1	64
β-strand	13	1	64
α-helix	18-26	9
α-helix	32-38	7
α-helix	44-51	8
β-strand	53	1	42
α-helix	57-61	5

2 more chain groups are not listed. Open the entry in the viewer and use the sequence panel to see them.

Molecules and chains

Molecule	Chains	Type	Length	Organism	UniProt
DNA-directed RNA polymerase II largest subunit	A	protein	1733	Saccharomyces cerevisiae	P04050 (AlphaFold model)
DNA-directed RNA polymerase II 140 kDa polypeptide	B	protein	1224	Saccharomyces cerevisiae	P08518 (AlphaFold model)
DNA-directed RNA polymerase II 45 kDa polypeptide	C	protein	318	Saccharomyces cerevisiae	P16370 (AlphaFold model)
DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide	E	protein	215	Saccharomyces cerevisiae	P20434 (AlphaFold model)
DNA-directed RNA polymerases I, II, and III 23 kDa polypeptide	F	protein	155	Saccharomyces cerevisiae	P20435
DNA-directed RNA polymerases I, II, and III 14.5 kDa polypeptide	H	protein	146	Saccharomyces cerevisiae	P20436
DNA-directed RNA polymerase II 14.2 kDa polypeptide	I	protein	122	Saccharomyces cerevisiae	P27999
DNA-directed RNA polymerases I, II, and III 8.3 kDa polypeptide	J	protein	70	Saccharomyces cerevisiae	P22139
DNA-directed RNA polymerase II 13.6 kDa polypeptide	K	protein	120	Saccharomyces cerevisiae	P38902
DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide	L	protein	70	Saccharomyces cerevisiae	P40422

Sequence of entity 1 (A), FASTA

>1TWF_1 DNA-directed RNA polymerase II largest subunit (chains A)
MVGQQYSSAPLRTVKEVQFGLFSPEEVRAISVAKIRFPETMDETQTRAKIGGLNDPRLGS
IDRNLKCQTCQEGMNECPGHFGHIDLAKPVFHVGFIAKIKKVCECVCMHCGKLLLDEHNE
LMRQALAIKDSKKRFAAIWTLCKTKMVCETDVPSEDDPTQLVSRGGCGNTQPTIRKDGLK
LVGSWKKDRATGDADEPELRVLSTEEILNIFKHISVKDFTSLGFNEVFSRPEWMILTCLP
VPPPPVRPSISFNESQRGEDDLTFKLADILKANISLETLEHNGAPHHAIEEAESLLQFHV
ATYMDNDIAGQPQALQKSGRPVKSIRARLKGKEGRIRGNLMGKRVDFSARTVISGDPNLE
LDQVGVPKSIAKTLTYPEVVTPYNIDRLTQLVRNGPNEHPGAKYVIRDSGDRIDLRYSKR
AGDIQLQYGWKVERHIMDNDPVLFNRQPSLHKMSMMAHRVKVIPYSTFRLNLSVTSPYNA
DFDGDEMNLHVPQSEETRAELSQLCAVPLQIVSPQSNKPCMGIVQDTLCGIRKLTLRDTF
IELDQVLNMLYWVPDWDGVIPTPAIIKPKPLWSGKQILSVAIPNGIHLQRFDEGTTLLSP
KDNGMLIIDGQIIFGVVEKKTVGSSNGGLIHVVTREKGPQVCAKLFGNIQKVVNFWLLHN
GFSTGIGDTIADGPTMREITETIAEAKKKVLDVTKEAQANLLTAKHGMTLRESFEDNVVR
FLNEARDKAGRLAEVNLKDLNNVKQMVMAGSKGSFINIAQMSACVGQQSVEGKRIAFGFV
DRTLPHFSKDDYSPESKGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQRR
LVKALEDIMVHYDNTTRNSLGNVIQFIYGEDGMDAAHIEKQSLDTIGGSDAAFEKRYRVD
LLNTDHTLDPSLLESGSEILGDLKLQVLLDEEYKQLVKDRKFLREVFVDGEANWPLPVNI
RRIIQNAQQTFHIDHTKPSDLTIKDIVLGVKDLQENLLVLRGKNEIIQNAQRDAVTLFCC
LLRSRLATRRVLQEYRLTKQAFDWVLSNIEAQFLRSVVHPGEMVGVLAAQSIGEPATQMT
LNTFHFAGVASKKVTSGVPRLKEILNVAKNMKTPSLTVYLEPGHAADQEQAKLIRSAIEH
TTLKSVTIASEIYYDPDPRSTVIPEDEEIIQLHFSLLDEEAEQSFDQQSPWLLRLELDRA
AMNDKDLTMGQVGERIKQTFKNDLFVIWSEDNDEKLIIRCRVVRPKSLDAETEAEEDHML
KKIENTMLENITLRGVENIERVVMMKYDRKVPSPTGEYVKEPEWVLETDGVNLSEVMTVP
GIDPTRIYTNSFIDIMEVLGIEAGRAALYKEVYNVIASDGSYVNYRHMALLVDVMTTQGG
LTSVTRHGFNRSNTGALMRCSFEETVEILFEAGASAELDDCRGVSENVILGQMAPIGTGA
FDVMIDEESLVKYMPEQKITEIEDGQDGGVTPYSNESGLVNADLDVKDELMFSPLVDSGS
NDAMAGGFTAYGGADYGEATSPFGAYGEAPTSPGFGVSSPGFSPTSPTYSPTSPAYSPTS
PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS
PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPSYSPTSPSYSPTSP
SYSPTSPSYSPTSPNYSPTSPSYSPTSPGYSPGSPAYSPKQDEQKHNENENSR

Sequence of entity 2 (B), FASTA

>1TWF_2 DNA-directed RNA polymerase II 140 kDa polypeptide (chains B)
MSDLANSEKYYDEDPYGFEDESAPITAEDSWAVISAFFREKGLVSQQLDSFNQFVDYTLQ
DIICEDSTLILEQLAQHTTESDNISRKYEISFGKIYVTKPMVNESDGVTHALYPQEARLR
NLTYSSGLFVDVKKRTYEAIDVPGRELKYELIAEESEDDSESGKVFIGRLPIMLRSKNCY
LSEATESDLYKLKECPFDMGGYFIINGSEKVLIAQERSAGNIVQVFKKAAPSPISHVAEI
RSALEKGSRFISTLQVKLYGREGSSARTIKATLPYIKQDIPIVIIFRALGIIPDGEILEH
ICYDVNDWQMLEMLKPCVEDGFVIQDRETALDFIGRRGTALGIKKEKRIQYAKDILQKEF
LPHITQLEGFESRKAFFLGYMINRLLLCALDRKDQDDRDHFGKKRLDLAGPLLAQLFKTL
FKKLTKDIFRYMQRTVEEAHDFNMKLAINAKTITSGLKYALATGNWGEQKKAMSSRAGVS
QVLNRYTYSSTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLS
LMSCISVGTDPMPIITFLSEWGMEPLEDYVPHQSPDATRVFVNGVWHGVHRNPARLMETL
RTLRRKGDINPEVSMIRDIREKELKIFTDAGRVYRPLFIVEDDESLGHKELKVRKGHIAK
LMATEYQDIEGGFEDVEEYTWSSLLNEGLVEYIDAEEEESILIAMQPEDLEPAEANEEND
LDVDPAKRIRVSHHATTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAMGV
FLTNYNVRMDTMANILYYPQKPLGTTRAMEYLKFRELPAGQNAIVAIACYSGYNQEDSMI
MNQSSIDRGLFRSLFFRSYMDQEKKYGMSITETFEKPQRTNTLRMKHGTYDKLDDDGLIA
PGVRVSGEDVIIGKTTPISPDEEELGQRTAYHSKRDASTPLRSTENGIVDQVLVTTNQDG
LKFVKVRVRTTKIPQIGDKFASRHGQKGTIGITYRREDMPFTAEGIVPDLIINPHAIPSR
MTVAHLIECLLSKVAALSGNEGDASPFTDITVEGISKLLREHGYQSRGFEVMYNGHTGKK
LMAQIFFGPTYYQRLRHMVDDKIHARARGPMQVLTRQPVEGRSRDGGLRFGEMERDCMIA
HGAASFLKERLMEASDAFRVHICGICGLMTVIAKLNHNQFECKGCDNKIDIYQIHIPYAA
KLLFQELMAMNITPRLYTDRSRDF

Sequence of entity 3 (C), FASTA

>1TWF_3 DNA-directed RNA polymerase II 45 kDa polypeptide (chains C)
MSEEGPQVKIREASKDNVDFILSNVDLAMANSLRRVMIAEIPTLAIDSVEVETNTTVLAD
EFIAHRLGLIPLQSMDIEQLEYSRDCFCEDHCDKCSVVLTLQAFGESESTTNVYSKDLVI
VSNLMGRNIGHPIIQDKEGNGVLICKLRKGQELKLTCVAKKGIAKEHAKWGPAAAIEFEY
DPWNKLKHTDYWYEQDSAKEWPQSKNCEYEDPPNEGDPFDYKAQADTFYMNVESVGSIPV
DQVVVRGIDTLQKKVASILLALTQMDQDKVNFASGDNNTASNMLGSNEDVMMTGAEQDPY
SNASQMGNTGSGGYDNAW

Sequence of entity 4 (E), FASTA

>1TWF_4 DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide (chains E)
MDQENERNISRLWRAFRTVKEMVKDRGYFITQEEVELPLEDFKAKYCDSMGRPQRKMMSF
QANPTEESISKFPDMGSLWVEFCDEPSVGVKTMKTFVIHIQEKNFQTGIFVYQNNITPSA
MKLVPSIPPATIETFNEAALVVNITHHELVPKHIRLSSDEKRELLKRYRLKESQLPRIQR
ADPVALYLGLKRGEVVKIIRKSETSGRYASYRICM

Sequence of entity 5 (F), FASTA

>1TWF_5 DNA-directed RNA polymerases I, II, and III 23 kDa polypeptide (chains F)
MSDYEEAFNDGNENFEDFDVEHFSDEETYEEKPQFKDGETTDANGKTIVTGGNGPEDFQQ
HEQIRRKTLKEKAIPKDQRATTPYMTKYERARILGTRALQISMNAPVFVDLEGETDPLRI
AMKELAEKKIPLVIRRYLPDGSFEDWSVEELIVDL

Sequence of entity 6 (H), FASTA

>1TWF_6 DNA-directed RNA polymerases I, II, and III 14.5 kDa polypeptide (chains H)
MSNTLFDDIFQVSEVDPGRYNKVCRIEAASTTQDQCKLTLDINVELFPVAAQDSLTVTIA
SSLNLEDTPANDSSATRSWRPPQAGDRSLADDYDYVMYGTAYKFEEVSKDLIAVYYSFGG
LLMRLEGNYRNLNNLKQENAYLLIRR

Sequence of entity 7 (I), FASTA

>1TWF_7 DNA-directed RNA polymerase II 14.2 kDa polypeptide (chains I)
MTTFRFCRDCNNMLYPREDKENNRLLFECRTCSYVEEAGSPLVYRHELITNIGETAGVVQ
DIGSDPTLPRSDRECPKCHSRENVFFQSQQRRKDTSMVLFFVCLSCSHIFTSDQKNKRTQ
FS

Sequence of entity 8 (J), FASTA

>1TWF_8 DNA-directed RNA polymerases I, II, and III 8.3 kDa polypeptide (chains J)
MIVPVRCFSCGKVVGDKWESYLNLLQEDELDEGTALSRLGLKRYCCRRMILTHVDLIEKF
LRYNPLEKRD

Sequence of entity 9 (K), FASTA

>1TWF_9 DNA-directed RNA polymerase II 13.6 kDa polypeptide (chains K)
MNAPDRFELFLLGEGESKLKIDPDTKAPNAVVITFEKEDHTLGNLIRAELLNDRKVLFAA
YKVEHPFFARFKLRIQTTEGYDPKDALKNACNSIINKLGALKTNFETEWNLQTLAADDAF

Sequence of entity 10 (L), FASTA

>1TWF_10 DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide (chains L)
MSREGFQIPTNLDAAAAGTSQARTATLKYICAECSSKLSLSRTDAVRCKDCGHRILLKAR
TKRLVQFEAR

Ligands and cofactors

ID	Name	Formula	Copies
UTP	Uridine 5'-triphosphate	C9 H15 N2 O15 P3	1
MN	Manganese (II) ion	Mn	2
ZN	Zinc ion	Zn	8

Primary citation

Structural basis of transcription: nucleotide selection by rotation in the RNA polymerase II active center. Westover, K.D., Bushnell, D.A., Kornberg, R.D. Cell (2004) 119:481-489. DOI 10.1016/j.cell.2004.10.016 · PubMed

Other PDB entries of the same protein (UniProt P04050 (AlphaFold model), which also has an AlphaFold model), best resolution first:

5VKO 1.8 Å, SPT6 tSH2-RPB1 1468-1500 pT1471, pS1493
9SV6 1.96 Å, CryoEM structure of transcribing RNA polymerase II elongation complex with ATP and Elf1
5VKL 2.2 Å, SPT6 tSH2-RPB1 1476-1500 pS1493
9W8V 2.23 Å, Structure of post-translocation state of yeast Pol II complexed with a cisplatin-induced…
9QEB 2.26 Å, CryoEM structure of transcribing RNA polymerase II elongation complex
9RYB 2.33 Å, CryoEM structure of transcribing RNA polymerase II elongation complex in post-catalysis…
9KD8 2.46 Å, The structure of RNA polymerase II elongation complex paused at N-2 state by actinomycin…
6NPW 2.49 Å, SSu72/Sympk in complex with Ser2/Ser5 phosphorylated peptide
9K7F 2.5 Å, RNA polymerase II elongation complex apo structure.
30ES 2.54 Å, Cryo-EM structure of the yeast RNA polymerase II elongation complex with 19-mer RNA in…
30EP 2.55 Å, Cryo-EM structure of the yeast RNA polymerase II elongation complex with 19-mer RNA in…
9W8T 2.56 Å, Structure of yeast Pol II in complex with a cisplatin-induced inter-strand crosslink…

Browse structure collections

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