2HLF: H/Cl exchange transporter clcA

Structure of the Escherichis coli ClC chloride channel Y445E mutant and Fab complex. Determined by X-ray diffraction at 3.3 Å resolution. Released 19 Sept 2006.

Method: X-ray diffraction
Resolution: 3.3 Å
Organisms: Escherichia coli, Mus musculus
Chains: 6
Atoms: 13,220
Mol. weight: 188.37 kDa
Released: 19 Sept 2006

Explore 2HLF in 3D Show helices and sheets RCSB PDB PDBe

Secondary structure: helices and β-sheets

2HLF contains 72 α-helices and 86 β-strands across 6 chains. Residue ranges use author residue numbering, as in the PDB file, from PDBe. To see them in 3D, choose the Cartoon representation with Secondary structure coloring: helices, sheets and coils get different colors.

Chain A: 25 helices, 2 β-strands

Element	Residues	Length	Sheet
α-helix	18-25	8
α-helix	33-70	38
α-helix	75-100	26
α-helix	102-104	3
α-helix	109-117	9
α-helix	124-139	16
β-strand	146	1	1
α-helix	148-165	18
α-helix	171-190	20
α-helix	193-199	7
α-helix	200-204	5
α-helix	215-233	19
α-helix	249-251	3
α-helix	253-284	32
α-helix	288-308	21
α-helix	310-312	3
α-helix	319-324	6
α-helix	330-349	20
β-strand	355	1	1
α-helix	357-378	22
α-helix	380-382	3
α-helix	386-394	9
α-helix	396-400	5
α-helix	405-416	12
α-helix	419-421	3
α-helix	422-435	14
α-helix	444-458	15

Chain B: 24 helices, 2 β-strands

Element	Residues	Length	Sheet
α-helix	19-25	7
α-helix	33-70	38
α-helix	75-100	26
α-helix	109-117	9
α-helix	124-138	15
α-helix	139-141	3
β-strand	146	1	2
α-helix	148-166	19
α-helix	171-190	20
α-helix	193-199	7
α-helix	200-204	5
α-helix	215-233	19
α-helix	249-251	3
α-helix	252-282	31
α-helix	288-305	18
α-helix	310-312	3
α-helix	319-324	6
α-helix	330-349	20
β-strand	355	1	2
α-helix	358-378	21
α-helix	386-393	8
α-helix	397-400	4
α-helix	405-416	12
α-helix	419-421	3
α-helix	422-435	14
α-helix	444-454	11

Chain C: 6 helices, 21 β-strands

Element	Residues	Length	Sheet
β-strand	3-7	5	3
β-strand	10-12	3	4
β-strand	18-25	8	3
β-strand	33-39	7	4
β-strand	45-51	7	4
β-strand	58-60	3	4
β-strand	68-73	6	3
β-strand	78-83	6	3
α-helix	88-90	3
β-strand	92-100	9	4
β-strand	107-111	5	4
β-strand	115-119	5	4
α-helix	123-124	2
β-strand	125	1	5
β-strand	128-132	5	6
α-helix	133-135	3
β-strand	143-153	11	6
β-strand	154	1	5
β-strand	159-162	4	7
α-helix	163-165	3
β-strand	171-173	3	6
α-helix	174-176	3
β-strand	177-179	3	6
β-strand	182-192	11	6
β-strand	201-207	7	7
α-helix	208-210	3
β-strand	212-218	7	7

Chain D: 6 helices, 20 β-strands

Element	Residues	Length	Sheet
β-strand	4-6	3	8
β-strand	10-13	4	9
β-strand	19-25	7	8
β-strand	33-37	5	9
β-strand	44-48	5	9
β-strand	52-53	2	9
α-helix	54	1
β-strand	61-66	6	8
β-strand	69-74	6	8
α-helix	79-81	3
β-strand	83-89	7	9
β-strand	96-97	2	9
β-strand	98	1	8
β-strand	101-105	5	9
β-strand	113-117	5	10
α-helix	118-120	3
α-helix	121-124	4
β-strand	128-138	11	10
β-strand	144-149	6	11
β-strand	152-154	3	11
β-strand	158-162	5	10
α-helix	163-166	4
β-strand	172-181	10	10
α-helix	182-186	5
β-strand	190-196	7	11
β-strand	204-209	6	11

Chain E: 4 helices, 21 β-strands

Element	Residues	Length	Sheet
β-strand	3-7	5	12
β-strand	10-12	3	13
β-strand	18-25	8	12
β-strand	33-39	7	13
β-strand	45-51	7	13
β-strand	58-60	3	13
β-strand	68-73	6	12
β-strand	78-83	6	12
α-helix	88-90	3
β-strand	92-100	9	13
β-strand	107-111	5	13
β-strand	115-119	5	13
β-strand	125	1	14
β-strand	128-132	5	15
α-helix	133-135	3
β-strand	143-153	11	15
β-strand	154	1	14
β-strand	159-162	4	16
α-helix	163-165	3
β-strand	171-173	3	15
α-helix	174-176	3
β-strand	177-178	2	15
β-strand	183-192	10	15
β-strand	202-207	6	16
β-strand	212-217	6	16

Chain F: 7 helices, 20 β-strands

Element	Residues	Length	Sheet
β-strand	4-6	3	17
β-strand	10-13	4	18
β-strand	18-29	12	17
β-strand	33-37	5	18
β-strand	44-48	5	18
β-strand	52-53	2	18
α-helix	54	1
β-strand	61-75	15	17
α-helix	79-81	3
β-strand	83-89	7	18
β-strand	96-97	2	18
β-strand	101-105	5	18
β-strand	110	1	19
β-strand	113-117	5	20
α-helix	118-120	3
α-helix	121-124	4
β-strand	128-138	11	20
β-strand	139	1	19
β-strand	143-149	7	21
β-strand	152-154	3	21
β-strand	158-162	5	20
α-helix	163-166	4
β-strand	172-181	10	20
α-helix	182-186	5
β-strand	190-197	8	21
α-helix	203	1
β-strand	204-209	6	21

Molecules and chains

Molecule	Chains	Type	Length	Organism	UniProt
H(+)/Cl(-) exchange transporter clcA	A, B	protein	444	Escherichia coli	P37019 (AlphaFold model)
Fab Fragment, Heavy chain	C, E	protein	221	Mus musculus	P01808 (AlphaFold model)
Fab Fragment, Light chain	D, F	protein	211	Mus musculus	P01837 (AlphaFold model)

Sequence of entity 1 (A, B), FASTA

>2HLF_1 H(+)/Cl(-) exchange transporter clcA (chains A, B)
RRRQLIRQLLERDKTPLAILFMAAVVGTLVGLAAVAFDKGVAWLQNQRMGALVHTADNYP
LLLTVAFLCSAVLAMFGYFLVRKYAPEAGGSGIPEIEGALEDQRPVRWWRVLPVKFFGGL
GTLGGGMVLGREGPTVQIGGNIGRMVLDIFRLKGDEARHTLLATGAAAGLAAAFNAPLAG
ILFIIEEMRPQFRYTLISIKAVFIGVIMSTIMYRIFNHEVALIDVGKLSDAPLNTLWLYL
ILGIIFGIFGPIFNKWVLGMQDLLHRVHGGNITKWVLMGGAIGGLCGLLGFVAPATSGGG
FNLIPIATAGNFSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAV
ELFPQYHLEAGTFAIAGMGALLAASIRAPLTGIILVLEMTDNYQLILPMIITGLGATLLA
QFTGGKPLESAILARTLAKQEAEQ

Sequence of entity 2 (C, E), FASTA

>2HLF_2 Fab Fragment, Heavy chain (chains C, E)
VRLLESGGGLVQPGGSLKLSCAASGFDYSRYWMSWVRQAPGKGLKWIGEINPVSSTINYT
PSLKDKFIISRDNAKDTLYLQISKVRSEDTALYYCARLYYGYGYWYFDVWGAGTTVTVSS
AKTTPPSVYPLAPGSAAAAASMVTLGCLVKGYFPEPVTVTWNSGSLAAGVHTFPAVLQAA
LYTLSSSVTVPSSSWPSETVTCNVAHPASSTKVDKKIVPRA

Sequence of entity 3 (D, F), FASTA

>2HLF_3 Fab Fragment, Light chain (chains D, F)
DIVLTQSPAIMSAAPGDKVTMTCSASSSVSYIHWYQQKSGTSPKRWIYDTSKLTSGVPVR
FSGSGSGTSYSLTINTMEAEDAATYYCQQWSSHPQTFGGGTKLEILRADAAPTVSIFPPS
SEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTL
TKDEYERHNSYTCEATHKTSTSPIVKSFNRA

Primary citation

Synergism Between Halide Binding and Proton Transport in a CLC-type Exchanger. Accardi, A., Lobet, S., Williams, C. et al. J Mol Biol (2006) 362:691-699. DOI 10.1016/j.jmb.2006.07.081 · PubMed

Other PDB entries of the same protein (UniProt P37019 (AlphaFold model), which also has an AlphaFold model), best resolution first:

4ENE 2.4 Å, Structure of the N- and C-terminal trimmed ClC-ec1 Cl-/H+ antiporter and Fab Complex
1OTS 2.51 Å, Structure of the Escherichia coli ClC Chloride channel and Fab Complex
8GA1 2.6 Å, CLC-ec1 R230C/L249C/C85A at pH 4.5 100mM Cl Swap
8GA5 2.6 Å, CLC-ec1 L25C/A450C/C85A at pH 4.5 100mM Cl Intermediate
6V2J 2.62 Å, Crystal structure of ClC-ec1 triple mutant (E113Q, E148Q, E203Q)
6ADB 2.69 Å, Crystal structure of the E148N mutant CLC-ec1 in 20mM bromide
3DET 2.8 Å, Structure of the E148A, Y445A doubly ungated mutant of E.coli CLC_Ec1, Cl-/H+ antiporter
4KKL 2.85 Å, Structure of the E148A mutant of CLC-ec1 delta NC construct in 100mM fluoride
4KK8 2.86 Å, Structure of the E148Q mutant of CLC-ec1 deltaNC construct in 100mM fluoride
4KJQ 2.88 Å, Structure of the CLC-ec1 deltaNC construct in 100mM fluoride
3EJZ 2.9 Å, Structure of E203V mutant E.coli Cl-/H+ exchanger, CLC-ec1
7CVT 2.9 Å, Crystal structure of the C85A/L194A/H234C mutant CLC-ec1 with Fab fragment

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