2J46: Water structure of T. Aquaticus Ffh NG Domain

Water structure of T. Aquaticus Ffh NG Domain At 1.1A Resolution. Determined by X-ray diffraction at 1.14 Å resolution. Released 30 Nov 2006.

Method: X-ray diffraction
Resolution: 1.14 Å
Organism: THERMUS AQUATICUS
Chains: 2
Atoms: 5,896
Mol. weight: 65.75 kDa
Ligands: MRD, MN
Released: 30 Nov 2006

Explore 2J46 in 3D Show helices and sheets RCSB PDB PDBe

Secondary structure: helices and β-sheets

2J46 contains 30 α-helices and 16 β-strands across 2 chains. Residue ranges use author residue numbering, as in the PDB file, from PDBe. To see them in 3D, choose the Cartoon representation with Secondary structure coloring: helices, sheets and coils get different colors.

Chain A: 15 helices, 8 β-strands

Element	Residues	Length	Sheet
α-helix	3-15	13
α-helix	24-40	17
α-helix	45-61	17
α-helix	70-86	17
α-helix	93-95	3
β-strand	99-104	6	1
α-helix	111-124	14
β-strand	129-133	5	1
α-helix	139-152	14
β-strand	156-158	3	1
α-helix	159-160	2
α-helix	165-178	14
β-strand	183-187	5	1
α-helix	196-209	14
β-strand	213-219	7	1
α-helix	220-222	3
α-helix	225-236	12
β-strand	241-245	5	1
α-helix	254-257	4
α-helix	259-263	5
β-strand	267-271	5	1
β-strand	279-281	3	1
α-helix	284-291	8

Chain B: 15 helices, 8 β-strands

Element	Residues	Length	Sheet
α-helix	3-14	12
α-helix	22-23	2
α-helix	24-40	17
α-helix	45-61	17
α-helix	70-85	16
α-helix	93-95	3
β-strand	99-104	6	2
α-helix	111-124	14
β-strand	129-133	5	2
α-helix	139-152	14
β-strand	156-158	3	2
α-helix	159-160	2
α-helix	165-178	14
β-strand	183-187	5	2
α-helix	196-209	14
β-strand	213-219	7	2
α-helix	220-222	3
α-helix	225-236	12
β-strand	241-245	5	2
α-helix	254-263	10
β-strand	267-271	5	2
β-strand	279-281	3	2
α-helix	284-291	8

Molecules and chains

Molecule	Chains	Type	Length	Organism	UniProt
Signal recognition particle protein	A, B	protein	297	THERMUS AQUATICUS	O07347 (AlphaFold model)

Sequence of entity 1 (A, B), FASTA

>2J46_1 SIGNAL RECOGNITION PARTICLE PROTEIN (chains A, B)
MFQQLSARLQEAIGRLRGRGRITEEDLKATLREIRRALMDADVNLEVARDFVERVREEAL
GKQVLESLTPAEVILATVYEALKEALGGEARLPVLKDRNLWFLVGLQGSGKTTTAAKLAL
YYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKARLEA
RDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVARAFDEKVGVT
GLVLTKLDGDARGGAALSARHVTGKPIYFAGVSEKPEGLEPFYPERLAGRILGMGDV

Ligands and cofactors

ID	Name	Formula	Copies
MRD	(4R)-2-methylpentane-2,4-diol	C6 H14 O2	2
MN	Manganese (II) ion	Mn	2

Water and common crystallization additives (CL, ACT) are not listed.

Primary citation

Analysis of Protein Hydration in Ultra-High Resolution Structures of the Srp Gtpase Ffh. Ramirez, U.D., Freymann, D.M. Acta Crystallogr D Biol Crystallogr (2006) 62:1520. DOI 10.1107/S0907444906040807 · PubMed

Other PDB entries of the same protein (UniProt O07347 (AlphaFold model), which also has an AlphaFold model), best resolution first:

1LS1 1.1 Å, T. aquaticus Ffh NG Domain at 1.1A Resolution
2J45 1.14 Å, Water structure of T. Aquaticus Ffh NG Domain At 1.1A Resolution
2C04 1.15 Å, GMPPCP complex of SRP GTPase Ffh NG Domain at ultra-high resolution
2C03 1.24 Å, GDP complex of srp gtpase ffh ng domain
1JPN 1.9 Å, GMPPNP Complex of SRP GTPase NG Domain
1RJ9 1.9 Å, Structure of the heterodimer of the conserved GTPase domains of the Signal Recognition…
2J7P 1.97 Å, GMPPNP-stabilized NG domain complex of the SRP GTPases Ffh and FtsY
2NG1 2.02 Å, N and gtpase domains of the signal sequence recognition protein ffh from thermus aquaticus
1NG1 2.03 Å, N and gtpase domains of the signal sequence recognition protein ffh from thermus aquaticus
1FFH 2.05 Å, N and gtpase domains of the signal sequence recognition protein ffh from thermus aquaticus
1OKK 2.05 Å, Homo-heterodimeric complex of the srp gtpases
1O87 2.1 Å, A new MgGDP complex of the Ffh NG domain

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