3EJY: H/Cl exchange transporter clcA

Structure of E203H mutant of E.coli Cl-/H+ antiporter, CLC-ec1. Determined by X-ray diffraction at 3.2 Å resolution. Released 17 Feb 2009.

Method: X-ray diffraction
Resolution: 3.2 Å
Organisms: Escherichia coli, Mus musculus
Chains: 6
Atoms: 13,218
Mol. weight: 194.68 kDa
Released: 17 Feb 2009

Explore 3EJY in 3D Show helices and sheets RCSB PDB PDBe

Secondary structure: helices and β-sheets

3EJY contains 69 α-helices and 98 β-strands across 6 chains. Residue ranges use author residue numbering, as in the PDB file, from PDBe. To see them in 3D, choose the Cartoon representation with Secondary structure coloring: helices, sheets and coils get different colors.

Chain A: 25 helices, 6 β-strands

Element	Residues	Length	Sheet
α-helix	18-24	7
β-strand	26	1	1
β-strand	28	1	1
α-helix	33-67	35
α-helix	75-100	26
α-helix	102-104	3
α-helix	109-116	8
α-helix	124-138	15
β-strand	146	1	2
α-helix	148-165	18
α-helix	171-190	20
α-helix	193-198	6
α-helix	199-204	6
β-strand	207	1	3
β-strand	209	1	3
α-helix	215-232	18
α-helix	249-251	3
α-helix	253-284	32
α-helix	288-308	21
α-helix	310-312	3
α-helix	319-324	6
α-helix	330-348	19
β-strand	355	1	2
α-helix	357-378	22
α-helix	380-382	3
α-helix	386-394	9
α-helix	397-400	4
α-helix	405-416	12
α-helix	419-421	3
α-helix	422-438	17
α-helix	444-457	14

Chain B: 24 helices, 6 β-strands

Element	Residues	Length	Sheet
β-strand	26	1	4
β-strand	28	1	4
α-helix	33-67	35
α-helix	75-100	26
α-helix	102-104	3
α-helix	109-116	8
α-helix	124-138	15
β-strand	146	1	5
α-helix	148-165	18
α-helix	171-190	20
α-helix	193-198	6
α-helix	199-204	6
β-strand	207	1	6
β-strand	209	1	6
α-helix	215-232	18
α-helix	249-251	3
α-helix	253-284	32
α-helix	288-308	21
α-helix	310-312	3
α-helix	319-324	6
α-helix	330-348	19
β-strand	355	1	5
α-helix	357-378	22
α-helix	380-382	3
α-helix	386-394	9
α-helix	396-400	5
α-helix	405-416	12
α-helix	419-421	3
α-helix	422-438	17
α-helix	444-457	14

Chain C: 5 helices, 22 β-strands

Element	Residues	Length	Sheet
β-strand	3-7	5	7
β-strand	11-12	2	8
β-strand	18-25	8	7
β-strand	33-39	7	9
β-strand	45-51	7	9
β-strand	58-60	3	9
β-strand	68-73	6	7
β-strand	78-83	6	7
α-helix	88-90	3
β-strand	92-100	9	9
β-strand	107-111	5	9
β-strand	115-117	3	9
β-strand	118-119	2	8
β-strand	125	1	10
α-helix	126-127	2
β-strand	128-131	4	11
α-helix	133-135	3
β-strand	143-153	11	11
β-strand	154	1	10
β-strand	159-162	4	12
β-strand	171-173	3	11
α-helix	174-176	3
β-strand	177-179	3	11
β-strand	182-192	11	11
β-strand	202-207	6	12
α-helix	208-210	3
β-strand	212-217	6	12

Chain D: 4 helices, 23 β-strands

Element	Residues	Length	Sheet
β-strand	4-5	2	13
β-strand	10-13	4	14
β-strand	19-20	2	15
β-strand	23-29	7	13
β-strand	33-37	5	14
β-strand	44-48	5	14
β-strand	52-53	2	14
β-strand	61-62	2	15
β-strand	65-70	6	13
β-strand	73-74	2	15
β-strand	83-89	7	14
β-strand	96-97	2	14
β-strand	101-105	5	14
β-strand	110	1	16
β-strand	113-117	5	17
α-helix	118-120	3
α-helix	121-124	4
β-strand	128-136	9	17
β-strand	139	1	16
β-strand	144-149	6	18
β-strand	152-154	3	18
β-strand	158-160	3	17
α-helix	162-166	5
β-strand	174-181	8	17
α-helix	182-186	5
β-strand	190-196	7	18
β-strand	204-209	6	18

Chain E: 4 helices, 20 β-strands

Element	Residues	Length	Sheet
β-strand	3-5	3	19
β-strand	10-12	3	20
β-strand	18-25	8	19
β-strand	34-39	6	20
β-strand	45-51	7	20
β-strand	60	1	20
β-strand	68-73	6	19
β-strand	78-83	6	19
α-helix	88-90	3
β-strand	92-101	10	20
β-strand	106-111	6	20
β-strand	115-119	5	20
β-strand	128-132	5	21
β-strand	143-153	11	21
β-strand	161-162	2	22
α-helix	163-165	3
β-strand	167	1	22
β-strand	171-173	3	21
α-helix	174-176	3
β-strand	177-178	2	21
β-strand	183-192	10	21
β-strand	202-207	6	22
α-helix	208-210	3
β-strand	212-217	6	22

Chain F: 7 helices, 21 β-strands

Element	Residues	Length	Sheet
β-strand	4-6	3	23
β-strand	10-13	4	24
β-strand	19-25	7	23
β-strand	33-37	5	24
β-strand	44-48	5	24
β-strand	52-53	2	24
α-helix	54	1
β-strand	61-65	5	23
β-strand	69-74	6	23
α-helix	79-81	3
β-strand	83-89	7	24
α-helix	95	1
β-strand	96-97	2	24
β-strand	101-105	5	24
α-helix	106	1
β-strand	110	1	25
β-strand	113-117	5	26
α-helix	118-120	3
α-helix	121-124	4
β-strand	128-138	11	26
β-strand	139	1	25
β-strand	144-149	6	27
β-strand	152-154	3	27
β-strand	158-162	5	26
β-strand	172-181	10	26
α-helix	182-186	5
β-strand	190-196	7	27
β-strand	204-209	6	27

Molecules and chains

Molecule	Chains	Type	Length	Organism	UniProt
H(+)/Cl(-) exchange transporter clcA	A, B	protein	473	Escherichia coli	P37019 (AlphaFold model)
Fab fragment, Heavy chain	C, E	protein	221	Mus musculus	P01808 (AlphaFold model)
Fab fragment, Light chain	D, F	protein	211	Mus musculus

Sequence of entity 1 (A, B), FASTA

>3EJY_1 H(+)/Cl(-) exchange transporter clcA (chains A, B)
MKTDTPSLETPQAARLRRRQLIRQLLERDKTPLAILFMAAVVGTLVGLAAVAFDKGVAWL
QNQRMGALVHTADNYPLLLTVAFLCSAVLAMFGYFLVRKYAPEAGGSGIPEIEGALEDQR
PVRWWRVLPVKFFGGLGTLGGGMVLGREGPTVQIGGNIGRMVLDIFRLKGDEARHTLLAT
GAAAGLAAAFNAPLAGILFIIEHMRPQFRYTLISIKAVFIGVIMSTIMYRIFNHEVALID
VGKLSDAPLNTLWLYLILGIIFGIFGPIFNKWVLGMQDLLHRVHGGNITKWVLMGGAIGG
LCGLLGFVAPATSGGGFNLIPIATAGNFSMGMLVFIFVARVITTLLCFSSGAPGGIFAPM
LALGTVLGTAFGMVAVELFPQYHLEAGTFAIAGMGALLAASIRAPLTGIILVLEMTDNYQ
LILPMIITGLGATLLAQFTGGKPLYSAILARTLAKQEAEQLARSKAASASENT

Sequence of entity 2 (C, E), FASTA

>3EJY_2 Fab fragment, Heavy chain (chains C, E)
VRLLESGGGLVQPGGSLKLSCAASGFDYSRYWMSWVRQAPGKGLKWIGEINPVSSTINYT
PSLKDKFIISRDNAKDTLYLQISKVRSEDTALYYCARLYYGYGYWYFDVWGAGTTVTVSS
AKTTPPSVYPLAPGSAAAAASMVTLGCLVKGYFPEPVTVTWNSGSLAAGVHTFPAVLQAA
LYTLSSSVTVPSSSWPSETVTCNVAHPASSTKVDKKIVPRA

Sequence of entity 3 (D, F), FASTA

>3EJY_3 Fab fragment, Light chain (chains D, F)
DIVLTQSPAIMSAAPGDKVTMTCSASSSVSYIHWYQQKSGTSPKRWIYDTSKLTSGVPVR
FSGSGSGTSYSLTINTMEAEDAATYYCQQWSSHPQTFGGGTKLEILRADAAPTVSIFPPS
SEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTL
TKDEYERHNSYTCEATHKTSTSPIVKSFNRA

Primary citation

Intracellular proton-transfer mutants in a CLC Cl-/H+ exchanger. Lim, H.H., Miller, C. J Gen Physiol (2009) 133:131-138. DOI 10.1085/jgp.200810112 · PubMed

Other PDB entries of the same protein (UniProt P37019 (AlphaFold model), which also has an AlphaFold model), best resolution first:

4ENE 2.4 Å, Structure of the N- and C-terminal trimmed ClC-ec1 Cl-/H+ antiporter and Fab Complex
1OTS 2.51 Å, Structure of the Escherichia coli ClC Chloride channel and Fab Complex
8GA1 2.6 Å, CLC-ec1 R230C/L249C/C85A at pH 4.5 100mM Cl Swap
8GA5 2.6 Å, CLC-ec1 L25C/A450C/C85A at pH 4.5 100mM Cl Intermediate
6V2J 2.62 Å, Crystal structure of ClC-ec1 triple mutant (E113Q, E148Q, E203Q)
6ADB 2.69 Å, Crystal structure of the E148N mutant CLC-ec1 in 20mM bromide
3DET 2.8 Å, Structure of the E148A, Y445A doubly ungated mutant of E.coli CLC_Ec1, Cl-/H+ antiporter
4KKL 2.85 Å, Structure of the E148A mutant of CLC-ec1 delta NC construct in 100mM fluoride
4KK8 2.86 Å, Structure of the E148Q mutant of CLC-ec1 deltaNC construct in 100mM fluoride
4KJQ 2.88 Å, Structure of the CLC-ec1 deltaNC construct in 100mM fluoride
3EJZ 2.9 Å, Structure of E203V mutant E.coli Cl-/H+ exchanger, CLC-ec1
7CVT 2.9 Å, Crystal structure of the C85A/L194A/H234C mutant CLC-ec1 with Fab fragment

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