Crystal Structure of Human Glycogenin-1 (GYG1) complexed with manganese, UDP and 1'-deoxyglucose. Determined by X-ray diffraction at 1.77 Å resolution. Released 2 Nov 2011.
Explore 3U2X in 3D Show helices and sheets RCSB PDB PDBe
3U2X contains 36 α-helices and 24 β-strands across 2 chains. Residue ranges use author residue numbering, as in the PDB file, from PDBe. To see them in 3D, choose the Cartoon representation with Secondary structure coloring: helices, sheets and coils get different colors.
| Element | Residues | Length | Sheet |
|---|---|---|---|
| β-strand | 4-10 | 7 | 1 |
| α-helix | 13-28 | 16 | |
| β-strand | 34-39 | 6 | 1 |
| α-helix | 45-54 | 10 | |
| β-strand | 57-60 | 4 | 1 |
| α-helix | 69-75 | 7 | |
| α-helix | 80-91 | 12 | |
| β-strand | 97-101 | 5 | 1 |
| β-strand | 105-107 | 3 | 2 |
| α-helix | 112-116 | 5 | |
| β-strand | 121-124 | 4 | 1 |
| α-helix | 125 | 1 | |
| β-strand | 132-139 | 8 | 1 |
| α-helix | 143-155 | 13 | |
| α-helix | 163-170 | 8 | |
| α-helix | 179-181 | 3 | |
| β-strand | 182 | 1 | 1 |
| α-helix | 185-187 | 3 | |
| β-strand | 189-190 | 2 | 2 |
| α-helix | 191-196 | 6 | |
| α-helix | 198-204 | 7 | |
| α-helix | 205-207 | 3 | |
| β-strand | 210-212 | 3 | 2 |
| α-helix | 219-221 | 3 | |
| β-strand | 224-225 | 2 | 3 |
| β-strand | 230-231 | 2 | 3 |
| α-helix | 238-240 | 3 | |
| α-helix | 244-252 | 9 | |
| α-helix | 253-257 | 5 | |
| α-helix | 258-261 | 4 |
| Element | Residues | Length | Sheet |
|---|---|---|---|
| β-strand | 4-10 | 7 | 4 |
| α-helix | 13-28 | 16 | |
| β-strand | 34-39 | 6 | 4 |
| α-helix | 45-54 | 10 | |
| β-strand | 57-60 | 4 | 4 |
| α-helix | 69-74 | 6 | |
| α-helix | 80-91 | 12 | |
| β-strand | 97-101 | 5 | 4 |
| β-strand | 105-107 | 3 | 5 |
| α-helix | 112-116 | 5 | |
| β-strand | 121-124 | 4 | 4 |
| α-helix | 125 | 1 | |
| β-strand | 132-139 | 8 | 4 |
| α-helix | 143-155 | 13 | |
| α-helix | 163-170 | 8 | |
| α-helix | 179-181 | 3 | |
| β-strand | 182 | 1 | 4 |
| α-helix | 185-187 | 3 | |
| β-strand | 189-190 | 2 | 5 |
| α-helix | 191-196 | 6 | |
| α-helix | 198-204 | 7 | |
| α-helix | 205-207 | 3 | |
| β-strand | 210-212 | 3 | 5 |
| α-helix | 219-221 | 3 | |
| β-strand | 224-225 | 2 | 6 |
| β-strand | 230-231 | 2 | 6 |
| α-helix | 238-240 | 3 | |
| α-helix | 244-252 | 9 | |
| α-helix | 253-257 | 5 | |
| α-helix | 258-261 | 4 |
| Molecule | Chains | Type | Length | Organism | UniProt |
|---|---|---|---|---|---|
| Glycogenin-1 | A, B | protein | 263 | Homo sapiens | P46976 (AlphaFold model) |
>3U2X_1 Glycogenin-1 (chains A, B) SMTDQAFVTLTTNDAYAKGALVLGSSLKQHRTTRRLVVLATPQVSDSMRKVLETVFDEVI MVDVLDSGDSAHLTLMKRPELGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFDREE LSAAPDPGWPDCFNSGVFVYQPSVETYNQLLHLASEQGSFDGGDQGILNTFFSSWATTDI RKHLPFIYNLSSISIYSYLPAFKVFGASAKVVHFLGRVKPWNYTYDPKTKSVKSEAHDPN MTHPEFLILWWNIFTTNVLPLLQ
| ID | Name | Formula | Copies |
|---|---|---|---|
| ASO | 1,5-anhydro-D-glucitol | C6 H12 O5 | 2 |
| UDP | Uridine-5'-diphosphate | C9 H14 N2 O12 P2 | 2 |
| MN | Manganese (II) ion | Mn | 2 |
Water and common crystallization additives (EDO) are not listed.
Crystal Structure of Human Glycogenin-1 (GYG1) complexed with manganese, UDP and 1'-deoxyglucose. Chaikuad, A., Froese, D.S., Krysztofinska, E. et al. To be published.
Other PDB entries of the same protein (UniProt P46976 (AlphaFold model), which also has an AlphaFold model), best resolution first:
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