3UGM: TAL effector PthXo1

Structure of TAL effector PthXo1 bound to its DNA target. Determined by X-ray diffraction at 3.0 Å resolution. Released 4 Jan 2012.

Method
X-ray diffraction
Resolution
3.0 Å
Organism
Xanthomonas oryzae
Chains
3
Atoms
7,853
Mol. weight
132.29 kDa
Released
4 Jan 2012

Explore 3UGM in 3D Show helices and sheets RCSB PDB PDBe

Secondary structure: helices and β-sheets

3UGM contains 58 α-helices and 0 β-strands across 1 chain. Residue ranges use author residue numbering, as in the PDB file, from PDBe. To see them in 3D, choose the Cartoon representation with Secondary structure coloring: helices, sheets and coils get different colors.

Chain A: 58 helices, 0 β-strands

ElementResiduesLengthSheet
α-helix222-2287
α-helix234-24512
α-helix258-2669
α-helix268-28215
α-helix291-2988
α-helix303-31311
α-helix315-3195
α-helix325-3284
α-helix337-35418
α-helix359-3668
α-helix371-38111
α-helix383-3897
α-helix393-4008
α-helix405-42218
α-helix427-4348
α-helix440-45415
α-helix461-4688
α-helix473-48816
α-helix495-50410
α-helix506-52116
α-helix528-5358
α-helix541-55212
α-helix553-5575
α-helix562-5687
α-helix574-59118
α-helix597-6037
α-helix608-61811
α-helix620-6223
α-helix631-6377
α-helix643-65614
α-helix664-6707
α-helix676-68611
α-helix688-6947
α-helix699-7024
α-helix711-72717
α-helix733-7397
α-helix744-75411
α-helix757-7604
α-helix766-7694
α-helix778-78811
α-helix800-8078
α-helix812-82615
α-helix835-8417
α-helix846-8549
α-helix868-8758
α-helix880-89314
α-helix894-8985
α-helix902-9098
α-helix914-92916
α-helix936-9438
α-helix948-95811
α-helix960-9645
α-helix970-9767
α-helix985-9939
α-helix994-10007
α-helix1004-10118
α-helix1015-10239
α-helix1026-10316

Molecules and chains

MoleculeChainsTypeLengthOrganismUniProt
TAL effector AvrBs3/PthAAprotein1047Xanthomonas oryzaeB2SU53 (AlphaFold model)
DNA-1BDNA38
DNA-2CDNA38
Sequence of entity 1 (A), FASTA
>3UGM_1 TAL effector AvrBs3/PthA (chains A)
MASSHHHHHHSSGLVPRGSSGSSMAARPPRAKPAPRRRAAQPSDASPAAQVDLRTLGYSQ
QQQEKIKPKVRSTVAQHHEALVGHGFTHAHIVALSQHPAALGTVAVTYQHIITALPEATH
EDIVGVGKQWSGARALEALLTDAGELRGPPLQLDTGQLVKIAKRGGVTAMEAVHASRNAL
TGAPLNLTPAQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALE
TMQRLLPVLCQAHGLPPDQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPDQVVAIASH
GGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPD
QVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGKQALETVQRLLPVLCQ
AHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQTHGLTPAQVVAIASHDGGKQALETVQ
QLLPVLCQAHGLTPDQVVAIASNIGGKQALATVQRLLPVLCQAHGLTPDQVVAIASNGGG
KQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQVQVV
AIASNIGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETVQRLLPVLCQAH
GLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQEQVVAIASNNGGKQALETVQRL
LPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPAQVVAIASNIGGKQ
ALETVQRLLPVLCQDHGLTLAQVVAIASNIGGKQALETVQRLLPVLCQAHGLTQDQVVAI
ASNIGGKQALETVQRLLPVLCQDHGLTPDQVVAIASNIGGKQALETVQRLLPVLCQDHGL
TLDQVVAIASNGGKQALETVQRLLPVLCQDHGLTPDQVVAIASNSGGKQALETVQRLLPV
LCQDHGLTPNQVVAIASNGGKQALESIVAQLSRPDPALAALTNDHLVALACLGGRPAMDA
VKKGLPHAPELIRRVNRRIGERTSHRV
Sequence of entity 2 (B), FASTA
>3UGM_2 DNA-1 (chains B)
TAGATATGCATCTCCCCCTACTGTACACCACCAAAAGT
Sequence of entity 3 (C), FASTA
>3UGM_3 DNA-2 (chains C)
TTTTGGTGGTGTACAGTAGGGGGAGATGCATATCTAAC

Primary citation

The Crystal Structure of TAL Effector PthXo1 Bound to Its DNA Target. Mak, A.N., Bradley, P., Cernadas, R.A. et al. Science (2012) 335:716-719. DOI 10.1126/science.1216211 · PubMed

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