Crystal structure of IBV papain-like protease PLpro C101S mutant in complex with ubiquitin. Determined by X-ray diffraction at 2.1 Å resolution. Released 15 Jun 2016.
Explore 5BZ0 in 3D Show helices and sheets RCSB PDB PDBe
5BZ0 contains 15 α-helices and 24 β-strands across 2 chains. Residue ranges use author residue numbering, as in the PDB file, from PDBe. To see them in 3D, choose the Cartoon representation with Secondary structure coloring: helices, sheets and coils get different colors.
| Element | Residues | Length | Sheet |
|---|---|---|---|
| α-helix | 59-62 | 4 | |
| α-helix | 69-78 | 10 | |
| β-strand | 85-88 | 4 | 1 |
| β-strand | 91-94 | 4 | 1 |
| α-helix | 95-96 | 2 | |
| α-helix | 101-112 | 12 | |
| β-strand | 117 | 1 | 2 |
| α-helix | 120-129 | 10 | |
| α-helix | 134-143 | 10 | |
| β-strand | 152 | 1 | 3 |
| α-helix | 154-162 | 9 | |
| β-strand | 165 | 1 | 2 |
| β-strand | 173-180 | 8 | 4 |
| β-strand | 183-190 | 8 | 4 |
| α-helix | 191-195 | 5 | |
| β-strand | 196-199 | 4 | 4 |
| α-helix | 204-208 | 5 | |
| β-strand | 209-213 | 5 | 4 |
| β-strand | 220-237 | 18 | 4 |
| β-strand | 242-245 | 4 | 4 |
| α-helix | 246-247 | 2 | |
| β-strand | 252-257 | 6 | 4 |
| β-strand | 263 | 1 | 3 |
| β-strand | 264-269 | 6 | 4 |
| β-strand | 272-274 | 3 | 4 |
| α-helix | 281-283 | 3 | |
| β-strand | 286-300 | 15 | 4 |
| Element | Residues | Length | Sheet |
|---|---|---|---|
| β-strand | 2-6 | 5 | 5 |
| β-strand | 12-16 | 5 | 5 |
| β-strand | 22 | 1 | 6 |
| α-helix | 23-34 | 12 | |
| α-helix | 38-40 | 3 | |
| β-strand | 41-45 | 5 | 5 |
| β-strand | 48-49 | 2 | 5 |
| α-helix | 50 | 1 | |
| β-strand | 55 | 1 | 6 |
| α-helix | 57-59 | 3 | |
| β-strand | 66-71 | 6 | 5 |
| β-strand | 75 | 1 | 3 |
| Molecule | Chains | Type | Length | Organism | UniProt |
|---|---|---|---|---|---|
| Replicase polyprotein 1ab | A | protein | 313 | Avian infectious bronchitis virus (strain Beaudette) | P0C6Y1 (AlphaFold model) |
| Ubiquitin-40S ribosomal protein S27a | B | protein | 76 | Bos taurus | P62992 (AlphaFold model) |
>5BZ0_1 Replicase polyprotein 1ab (chains A) LGSTCKQKTIYLTEDGVKYRSIVLKPGDSLGQFGQVYAKNKIVFTADDVEDKEILYVPTT DKSILEYYGLDAQKYVIYLQTLAQKWNVQYRDNFLILEWRDGNSWISSAIVLLQAAKIRF KGFLTEAWAKLLGGDPTDFVAWCYASCTAKVGDFSDANWLLANLAEHFDADYTNAFLKKR VSCNCGIKSYELRGLEACIQPVRATNLLHFKTQYSNCPTCGANNTDEVIEASLPYLLLFA TDGPATVDCDEDAVGTVVFVGSTNSGHCYTQAAGQAFDNLAKDRKFGKKSPYITAMYTRF AFKNETSLPVAKQ
>5BZ0_2 Ubiquitin-40S ribosomal protein S27a (chains B) MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN IQKESTLHLVLRLRGG
| ID | Name | Formula | Copies |
|---|---|---|---|
| ZN | Zinc ion | Zn | 1 |
Crystal structure of IBV papain-like protease PLpro C101S mutant in complex with ubiquitin. Kong, L.Y., Yan, L.M., Zhang, Y. et al. To be published.
Other PDB entries of the same protein (UniProt P0C6Y1 (AlphaFold model), which also has an AlphaFold model), best resolution first:
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