Ef-tu (escherichia coli) in complex with thiomuracin analog. Determined by X-ray diffraction at 2.01 Å resolution. Released 13 Jul 2016.
Explore 5JBQ in 3D Show helices and sheets RCSB PDB PDBe
5JBQ contains 17 α-helices and 31 β-strands across 1 chain. Residue ranges use author residue numbering, as in the PDB file, from PDBe. To see them in 3D, choose the Cartoon representation with Secondary structure coloring: helices, sheets and coils get different colors.
| Element | Residues | Length | Sheet |
|---|---|---|---|
| α-helix | 3-6 | 4 | |
| β-strand | 11-15 | 5 | 1 |
| β-strand | 16-17 | 2 | 2 |
| α-helix | 24-39 | 16 | |
| α-helix | 46-50 | 5 | |
| α-helix | 52-53 | 2 | |
| β-strand | 54-56 | 3 | 3 |
| β-strand | 61-63 | 3 | 3 |
| β-strand | 65-70 | 6 | 1 |
| β-strand | 75-80 | 6 | 1 |
| α-helix | 84-93 | 10 | |
| β-strand | 101-106 | 6 | 2 |
| α-helix | 113-125 | 13 | |
| β-strand | 130-135 | 6 | 2 |
| α-helix | 137-139 | 3 | |
| α-helix | 144-159 | 16 | |
| α-helix | 164-166 | 3 | |
| β-strand | 169-171 | 3 | 2 |
| α-helix | 174-178 | 5 | |
| α-helix | 182-198 | 17 | |
| α-helix | 200-204 | 5 | |
| α-helix | 205-207 | 3 | |
| α-helix | 209-210 | 2 | |
| β-strand | 211-213 | 3 | 4 |
| β-strand | 217-220 | 4 | 5 |
| β-strand | 224-230 | 7 | 5 |
| β-strand | 233 | 1 | 4 |
| β-strand | 235-237 | 3 | 6 |
| β-strand | 241-245 | 5 | 4 |
| β-strand | 251-254 | 4 | 4 |
| β-strand | 255-260 | 6 | 5 |
| β-strand | 263-265 | 3 | 5 |
| β-strand | 267-269 | 3 | 6 |
| β-strand | 273-278 | 6 | 5 |
| α-helix | 283-285 | 3 | |
| β-strand | 288 | 1 | 7 |
| β-strand | 290 | 1 | 7 |
| β-strand | 291-293 | 3 | 4 |
| β-strand | 299-310 | 12 | 8 |
| α-helix | 311-312 | 2 | |
| β-strand | 322-323 | 2 | 9 |
| β-strand | 329-332 | 4 | 8 |
| β-strand | 335-342 | 8 | 8 |
| α-helix | 343-344 | 2 | |
| β-strand | 349-350 | 2 | 9 |
| β-strand | 355-368 | 14 | 8 |
| β-strand | 373-378 | 6 | 8 |
| β-strand | 381-391 | 11 | 8 |
| Molecule | Chains | Type | Length | Organism | UniProt |
|---|---|---|---|---|---|
| Elongation factor Tu 1 | A | protein | 394 | Escherichia coli (strain K12) | P0CE47 (AlphaFold model) |
| Thiomuracin analog | B | protein | 13 | synthetic construct |
>5JBQ_1 Elongation factor Tu 1 (chains A) MSKEKFERTKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARG ITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHI LLGRQVGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALE GDAEWEAKILELAGFLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVG EEVEIVGIKETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQVLAKPGTIK PHTKFESEVYILSKDEGGRHTPFFKGYRPQFYFRTTDVTGTIELPEGVEMVMPGDNIKMV VTLIHPIAMDDGLRFAIREGGRTVGAGVVAKVLG
>5JBQ_2 THIOMURACIN ANALOG (chains B) SCNCFCYPCCSCX
Water and common crystallization additives (SO4) are not listed.
Antibacterial and Solubility Optimization of Thiomuracin A. LaMarche, M.J., Leeds, J.A., Brewer, J. et al. J Med Chem (2016) 59:6920-6928. DOI 10.1021/acs.jmedchem.6b00726 · PubMed
Other PDB entries of the same protein (UniProt P0CE47 (AlphaFold model), which also has an AlphaFold model), best resolution first:
MolViewer shows 5JBQ directly in your browser with nothing to install. Switch between cartoon, ball-and-stick, spacefill and surface views, color by chain, secondary structure or B-factor, measure distances, angles and dihedrals, and share or embed the view.