5OEJ: PDB entry 5OEJ

Structure of Tra1 subunit within the chromatin modifying complex SAGA. Determined by electron microscopy at 5.7 Å resolution. Released 2 Aug 2017.

Method
Electron microscopy
Resolution
5.7 Å
Organism
Komagataella pastoris
Chains
1
Atoms
14,023
Mol. weight
438.06 kDa
Released
2 Aug 2017

Explore 5OEJ in 3D Show helices and sheets RCSB PDB PDBe

Secondary structure: helices and β-sheets

5OEJ contains 162 α-helices and 12 β-strands across 1 chain. Residue ranges use author residue numbering, as in the PDB file, from PDBe. To see them in 3D, choose the Cartoon representation with Secondary structure coloring: helices, sheets and coils get different colors.

Chain B: 162 helices, 12 β-strands

ElementResiduesLengthSheet
α-helix4-1512
α-helix22-3413
α-helix45-5511
α-helix71-8111
α-helix97-1004
α-helix101-1044
α-helix117-1237
α-helix138-1447
α-helix189-20012
α-helix221-23111
α-helix241-2488
α-helix265-28420
α-helix294-30815
α-helix314-33017
α-helix335-34511
α-helix359-37820
α-helix385-39612
α-helix405-42218
α-helix432-46231
α-helix558-58023
α-helix654-66714
α-helix673-68917
α-helix699-7068
α-helix714-72512
α-helix735-74814
α-helix761-77616
α-helix785-79410
α-helix803-81816
α-helix827-84115
α-helix849-86214
α-helix870-88213
α-helix889-90618
α-helix920-9289
α-helix974-9818
α-helix993-100614
α-helix1016-10249
α-helix1054-106613
α-helix1073-109321
α-helix1120-113213
α-helix1138-115417
α-helix1170-11767
α-helix1184-120118
α-helix1212-12209
α-helix1235-125016
α-helix1259-127416
α-helix1282-129514
α-helix1302-131413
α-helix1328-133912
α-helix1353-136311
α-helix1385-140016
α-helix1414-142714
α-helix1435-144511
α-helix1455-147016
α-helix1476-149217
α-helix1499-151517
α-helix1528-153912
α-helix1547-156216
α-helix1573-15797
α-helix1585-159410
α-helix1600-160910
α-helix1615-163016
α-helix1642-16465
α-helix1649-16535
α-helix1667-16748
α-helix1679-16879
α-helix1695-171117
α-helix1717-173115
α-helix1740-17445
α-helix1752-176615
α-helix1774-179421
α-helix1810-182011
α-helix1839-18479
α-helix1853-187018
α-helix1876-189217
α-helix1898-191114
α-helix1917-192812
α-helix1929-19324
α-helix1975-199016
α-helix2004-201916
α-helix2086-209813
α-helix2109-212214
α-helix2132-214211
α-helix2153-216513
α-helix2173-218816
α-helix2195-221218
α-helix2227-224014
α-helix2247-225913
α-helix2264-228421
α-helix2294-22985
α-helix2308-232114
α-helix2327-234317
α-helix2349-236517
α-helix2371-238515
α-helix2391-240414
α-helix2410-242415
α-helix2430-244415
α-helix2450-246415
α-helix2470-248011
α-helix2497-251014
α-helix2522-253312
α-helix2541-25499
α-helix2556-256510
α-helix2578-259316
α-helix2603-261311
α-helix2623-26308
α-helix2638-264710
α-helix2658-266811
α-helix2676-26838
α-helix2691-26966
α-helix2703-271614
α-helix2724-273714
α-helix2740-27423
α-helix2743-27497
α-helix2757-27648
α-helix2772-278110
α-helix2792-280211
α-helix2811-28188
α-helix2821-28244
α-helix2825-28328
α-helix2840-286324
α-helix2877-288913
α-helix2897-29059
α-helix2909-29157
α-helix2937-29459
α-helix2948-29569
α-helix2965-29695
α-helix2984-29918
α-helix3000-30078
α-helix3018-303114
α-helix3041-30499
α-helix30571
α-helix3058-30625
α-helix3063-30719
α-helix3077-308711
α-helix3088-30936
α-helix3098-311013
α-helix3120-31289
α-helix3133-31353
α-helix3140-31434
α-helix3155-316410
α-helix3170-318011
α-helix3277-329418
α-helix3302-331312
α-helix3324-333815
α-helix3355-33606
α-helix3369-337911
α-helix3385-340016
β-strand3409-341131
α-helix3424-34274
α-helix3431-34322
β-strand3455-345731
β-strand345812
β-strand346613
β-strand346712
β-strand3470-347124
β-strand3479-348024
β-strand348413
α-helix3492-350716
α-helix3514-35174
β-strand352715
β-strand353515
α-helix3545-35539
α-helix3564-357310
α-helix3589-35946
α-helix3602-361211
α-helix3616-363722
β-strand371516
β-strand371816
α-helix3721-373010
α-helix3741-37488
α-helix3757-37615
α-helix3772-378312
α-helix3799-38068
α-helix3812-38154

Molecules and chains

MoleculeChainsTypeLengthOrganismUniProt
Tra1 subunit within the chromatin modifying complex SAGABprotein3825Komagataella pastorisC4QYV4
Sequence of entity 1 (B), FASTA
>5OEJ_1 Tra1 subunit within the chromatin modifying complex SAGA (chains B)
MLHVVQLDDFATRLKAAEDYQSKHSVLSEICDSLETFNAAQDYEYFLKSLIPLFIDVLKE
VPVSFVANSPENKLRNITLEILHRIPANDALQAYSNEIVDTLMDLLKVENELNGILCMKA
ITTLHKTFKASLQEKVHPFIDIVIEIYSNIPQVVEEQFNGNQIDSKENVDSTSRPNSPSF
SSQSDDSKQLAQAMFSFKTLAESPITMVSLYSSYKELAASSLGNFIPHVMKVLSLEVAKQ
AEARKAAEEKGIILVNVCKEITNRANYGEFIIGQVKAASFLAYLFIRRQAQTFLEPYQQA
IPDIIIRLLQDCPSELSAARKELLHATRHILSTDFRKMFIPKIDLLFDLRVLIGEGFTAY
ETLRPLAYSTVADFIHNVRDHLTPAQLWKSVSIYCKNLQDDSLALTVQIMSAKLLLNLIE
KIMRSESKTESRQLLMVIIDAYTKRFKMLNSRYNGIMKQHATYEKEKQEKQNQERLLTNK
LDGTTPSPSDDKKVELIDEDQDVKMEDPTPEISDQETIKGDNDASTEPQDSEQQLADFMS
LQEYLPIQVSVPPEIDLLKDSRYLFKTLMTFLKTIMIGLKNSNPPSSQNHFNAQNWNETA
RGFSNEDINILKSLFRECILALRFFSTSKTSLPASSMKQSFDITGPNLPITSTKEEKDLM
EIFATMFIHIDPASFNEIVREELPFMYKQMLDFASLLHIPQFFLASVITSSSFSGILITF
LKSKLVDLGEVNIIKSNILIRLFKLCFMSVSLFPAANESVILPHLNELILKSLKLSTTAK
EPLVYFYLIRTLFRSIGGGRFENLYKEIMPLLQVLLESLSKLIHEARRPQERDIYVELCL
TVPVRLSVLVPHLSYLMKPLVYALNGSQESVSQGLRTLELCVDNLTAEYFDPIIEPVIDD
VMEALSKHLKPLPYYHQHSHTTLRILGKLGGRNRTFIKPVDNLKTDSELFQNVEAMFKIH
GLPNEVPLSITPGLSAAFSLLTDPRPRIHYRINSFKYISGIFQLFLGATQLPDDYANRLK
ESMDIILEDTIAPDEPLNKLHHFPVKDIAKYDSQMELLVKLLESIFYAVSLQEVREESKA
LIRGTCNHFILLYFNKMVIDKRKFVRKFSVDNHEGNLFLNENCIFDAIIYALSSDNSAVR
SMGLESVQLIYDSCVELFGNIDCALKFAPLNVMCSKFIHCCFEEPYHKKLAGCIGLEMML
NSLDIPMKYFNARQLEIIRALFYVLRDTAPELPCEVTNTAKRLILNSLKEWNKELTRNDV
FSSVFQNLVSSLIVDLPNANEIVRATAQEALRTLSETTQVPIATMISPCKHILLAPIFGK
PLRALPFQMQIGNIDAITFCMGLENSFLEYNEELNRLVQEALALVDAEDESLVSAHRISE
HKTSEQLVRLRVVCIQLLSLAITKPEFAAAQQRSNIRVKILVVFFKSLCGRSIEIIRAAH
GGLKAVIDLKMKLPKELLQNGLRPMLMNLSDHKKLTVASLEALSGLLKLFISYFKVGIGS
KLLDHLLAWAQPRTLQQLGSQDLENNSTVQIIVAILDVFHLLPPTAHKFMNDLMNALLYL
ENNLHRCQYSPFREPLAKFLDRFPDESFEYFFNEFSKREITTRFVYFVGLDSCSSLRAKV
LESLPRVRGLLHQEGSAEEKCVRFSNLVDLCESLAASDKEWIKDKEELLGELLDAGSVCL
TLKRSSNVVSPLYFQVDQGFETLQLLYIEYFKSQPLGHEKVFNFIDKISKEGLPFVLEFD
DFIFNEVVKCQDIPTVQQTLDTIIRMTPQVSSLDARVYLYKRIFLPICIYESEMHGDLSR
LSQTENNELPAWLKSFDSDVWKATGPLVDDYTSTLEDRYRLELMQLTALLIKGAPTALTD
MRKDIIKFSWNYIKLDDNTSKQAAYVVTAYFISRFDTPSELTTRIFVALLRCHQIDTRYL
VKQALELLAPVLSERTNSELDWLKWPRRVLSEDGFNITQVANIYQLIVKFPDLFYPARDH
FIPNIITAMGKLTVMSNTSLENQQLAIDLAELILKWETKLPKSEKLGSAEETEKEKSVSE
DKMDIDVKEETKEDIAERPKAEDQIGGDDSDSSNILTSEDYEVSFAQREACVTFLIRYIC
ISTQRPSENELGKRALNILYELLGPKYWSEVTVKLQFFERFLMSSDLNQPSLLGYCLNAL
EVLAVALKWKPTTWIIENVSYLQKLLEKCLRSDNQDIQEILQKVLGIILEAINKETQGSE
EDEPEEVTNFISLIVNIIGEDLSNMTSVAAGVSLCWTLSLYRPNALDSLLPSIMRTFNKL
CRDHIAISLQGNQPQSGDFANIEFEAKVTTNLLEKILNLCAARISSLDDQRRVFLSLLAQ
LIDRSVDKDMLLKVINIVTEWIFKTDFYPTTKEKAGILGKMMIFDLRGEPELSKKFNQVI
VDIFESKELAHTELTARMETAFLFGTRLSDVSIRKKLMSILSDSLELDIDKRLFYIIKDQ
NWEYLSDYPWLNQALQLLYGSFHLDSPIRLSPEENTLSPLQSITEGLAREKSPVEKAPQN
IIDFVAKHNEFLDSVRSLTAGDILNPLIDISYQSAETIHNAWVVVFPVAYSAIESRYELE
FTRALVKLLFKDYHIRQQDARPNVIKSLLDGVGKCPGLHLPPHLVKYLGSNYNAWYGAIK
LLEELSEGQGIDNQKISDANQDALLEVYMSLQEDDMFYGTWRRRAKYFETNAALSYEQIG
IWDKALQLYEAAQIKARSGVFPFGESEYSLWEDHWIYCAEKLQHWEILTELAKHEGFTDL
LLECGWRGADWIADREPLEQSVKTVMDIPTPRRQIFQTFLALQGFSQQKDTLQDVSRLCD
EGIQLTLRKWNALPQRVTRAHIGLLHTFQQYVELMEASQVYSSLVTTNAQNLDVKSQELK
RVLQAWRERLPNVWDDINIWNDLVTWRQHVFGVINRVYMPFVPVLQQSNGTNNGNSYAYR
GYHEMAWVINRFAHVARKHEMPEVCINQLTKIYTLPNIEIQEAFLKLREQAKCHYQNSSE
LNTGLDVISNTNLVYFATQQKAEFFTLKGMFLAKLNAKDEANQAFATAVQIDLNLPKAWA
EWGFFNDRRFKENPEEIFHAKNAISCYLQAAGLYKDGKTRKLLCRILWLISLDDAAGSLA
KTFEDHHGESPVWYWITFVPQLLTSLSHKEAKIVRHILIQIAKSYPQSLHFQLRTTKEDY
QAIQRQAMAVNRAEEQSSNKQDTADSVLKNTNTPQPQTRTETSGTTAESDKKPSIPPKEE
QGSPQPSRPATTQASPQAQSQENGESSQKHPPEIPTTDSRQPWQDVEEIMGILKTAYPLL
ALSLESLVDQLNQRFKCNADEDAYRLVIVLYNDGVQQMNRVANPREEVKLPAATEASISR
FADSVLPKNIREVFEQDIIACNPNLETYISKLRKWRDCLEEKLDRSYGKADLERVSLHLS
LFHHQKFEDIEIPGQYLLHKDNNNHFIKIERFLPTLDLVRGSNGCYKRMTIRGNDGSLHP
FAVQFPAARHCRREERIFQLFRIFDDALSRKVQSRRRNISLTLPIAVPLSPHIRILNDDK
RYTTLMGIYEEFCRRKGQSRDEPFAYTIQKLRAAFDPRLPKPDIVSVRAEVLASIQSTLV
PSTLLKDYYTEKFSNYENYWLFRKQFTAQYASFIFMTYIMCINSRQPQKIHINEGSGNIW
TSEMLPTKVATGKTHSTAYNNSTLDPAVKAGAPIFYNTESVPFRLTPNIQKFIGEAGLEG
ILSVYILVIANSLSDSEFDMEQYLSLFVRDEVISWFAQQHRASAQTNQLREIVRVNVELL
TKRVLQLNHIPNSQNVATQFVLNLISQAVNPRNLAYTDSAWMAYL

Primary citation

Structure of the transcription activator target Tra1 within the chromatin modifying complex SAGA. Sharov, G., Voltz, K., Durand, A. et al. Nat Commun (2017) 8:1556-1556. DOI 10.1038/s41467-017-01564-7 · PubMed

Other PDB entries of the same protein (UniProt C4QYV4), best resolution first:

Browse structure collections

About this viewer

MolViewer shows 5OEJ directly in your browser with nothing to install. Switch between cartoon, ball-and-stick, spacefill and surface views, color by chain, secondary structure or B-factor, measure distances, angles and dihedrals, and share or embed the view.