5Y95: Haddock model of mSIN3B PAH1 domain

Haddock model of mSIN3B PAH1 domain. Determined by solution NMR. Released 4 Oct 2017.

Method
Solution NMR
Organism
Mus musculus
Chains
1
Atoms
639
Mol. weight
9.08 kDa
Ligands
8TL
Released
4 Oct 2017

Explore 5Y95 in 3D Show helices and sheets RCSB PDB PDBe

Secondary structure: helices and β-sheets

5Y95 contains 4 α-helices and 0 β-strands across 1 chain. Residue ranges use author residue numbering, as in the PDB file, from PDBe. To see them in 3D, choose the Cartoon representation with Secondary structure coloring: helices, sheets and coils get different colors.

Chain A: 4 helices, 0 β-strands

ElementResiduesLengthSheet
α-helix37-4711
α-helix52-6615
α-helix72-8211
α-helix87-959

Molecules and chains

MoleculeChainsTypeLengthOrganismUniProt
Paired amphipathic helix protein Sin3bAprotein80Mus musculusQ62141 (AlphaFold model)
Sequence of entity 1 (A), FASTA
>5Y95_1 Paired amphipathic helix protein Sin3b (chains A)
GSSGSSGVHVEDALTYLDQVKIRFGSDPATYNGFLEIMKEFKSQSIDTPGVIRRVSQLFH
EHPDLIVGFNAFLPSGPSSG

Ligands and cofactors

IDNameFormulaCopies
8TLpropan-2-yl (3R,6S,9aS)-3-ethyl-8-(3-methylbutyl)-6-(2-methylsulfanylethyl)-4,7…C20 H35 N3 O5 S1

Primary citation

A mimetic of the mSin3-binding helix of NRSF/REST ameliorates abnormal pain behavior in chronic pain models. Ueda, H., Kurita, J.I., Neyama, H. et al. Bioorg Med Chem Lett (2017) 27:4705-4709. DOI 10.1016/j.bmcl.2017.09.006 · PubMed

Other PDB entries of the same protein (UniProt Q62141 (AlphaFold model), which also has an AlphaFold model), best resolution first:

Browse structure collections

About this viewer

MolViewer shows 5Y95 directly in your browser with nothing to install. Switch between cartoon, ball-and-stick, spacefill and surface views, color by chain, secondary structure or B-factor, measure distances, angles and dihedrals, and share or embed the view.