Residue assignment correction to the voltage gated calcium Cav1.1 rabbit alpha 1 subunit PDB entries 3JBR & 5GJV. Determined by electron microscopy at 3.6 Å resolution. Released 2 May 2018.
Explore 6BYO in 3D Show helices and sheets RCSB PDB PDBe
6BYO contains 60 α-helices and 8 β-strands across 1 chain. Residue ranges use author residue numbering, as in the PDB file, from PDBe. To see them in 3D, choose the Cartoon representation with Secondary structure coloring: helices, sheets and coils get different colors.
| Element | Residues | Length | Sheet |
|---|---|---|---|
| α-helix | 42-48 | 7 | |
| α-helix | 53-67 | 15 | |
| α-helix | 82-107 | 26 | |
| α-helix | 116-119 | 4 | |
| α-helix | 121-133 | 13 | |
| α-helix | 167-170 | 4 | |
| α-helix | 172-178 | 7 | |
| α-helix | 182-190 | 9 | |
| α-helix | 197-218 | 22 | |
| β-strand | 227 | 1 | 1 |
| β-strand | 228 | 1 | 2 |
| α-helix | 233 | 1 | |
| β-strand | 234 | 1 | 1 |
| α-helix | 235 | 1 | |
| β-strand | 259 | 1 | 2 |
| α-helix | 278-284 | 7 | |
| α-helix | 286-289 | 4 | |
| α-helix | 294-304 | 11 | |
| α-helix | 311-335 | 25 | |
| α-helix | 337-340 | 4 | |
| α-helix | 341-343 | 3 | |
| α-helix | 347-374 | 28 | |
| α-helix | 420-427 | 8 | |
| α-helix | 433-448 | 16 | |
| α-helix | 459-484 | 26 | |
| α-helix | 488-493 | 6 | |
| α-helix | 495-516 | 22 | |
| α-helix | 521-531 | 11 | |
| α-helix | 532-540 | 9 | |
| α-helix | 545-556 | 12 | |
| α-helix | 562-580 | 19 | |
| α-helix | 602-611 | 10 | |
| α-helix | 616-627 | 12 | |
| α-helix | 635-637 | 3 | |
| α-helix | 640-650 | 11 | |
| α-helix | 655-662 | 8 | |
| α-helix | 666-668 | 3 | |
| α-helix | 789-796 | 8 | |
| α-helix | 799-817 | 19 | |
| α-helix | 827-851 | 25 | |
| α-helix | 862-879 | 18 | |
| α-helix | 895-898 | 4 | |
| α-helix | 899-902 | 4 | |
| α-helix | 904-908 | 5 | |
| α-helix | 914-949 | 36 | |
| β-strand | 955-957 | 3 | 3 |
| β-strand | 971-975 | 5 | 4 |
| β-strand | 983-987 | 5 | 4 |
| β-strand | 990-992 | 3 | 3 |
| α-helix | 1000-1009 | 10 | |
| α-helix | 1016-1024 | 9 | |
| α-helix | 1039-1042 | 4 | |
| α-helix | 1044-1072 | 29 | |
| α-helix | 1084-1092 | 9 | |
| α-helix | 1106-1115 | 10 | |
| α-helix | 1118-1124 | 7 | |
| α-helix | 1126-1136 | 11 | |
| α-helix | 1144-1172 | 29 | |
| α-helix | 1181-1203 | 23 | |
| α-helix | 1230-1233 | 4 | |
| α-helix | 1237-1240 | 4 | |
| α-helix | 1241-1245 | 5 | |
| α-helix | 1251-1263 | 13 | |
| α-helix | 1267-1288 | 22 | |
| α-helix | 1309-1320 | 12 | |
| α-helix | 1325-1331 | 7 | |
| α-helix | 1358-1382 | 25 | |
| α-helix | 1384-1387 | 4 |
| Molecule | Chains | Type | Length | Organism | UniProt |
|---|---|---|---|---|---|
| Voltage-dependent L-type calcium channel subunit alpha-1S | A | protein | 1357 | Oryctolagus cuniculus | P07293 (AlphaFold model) |
>6BYO_1 Voltage-dependent L-type calcium channel subunit alpha-1S (chains A) FCLTLQNPLRKACISIVEWKPFETIILLTIFANCVALAVYLPMPEDDNNSLNLGLEKLEY FFLTVFSIEAAMKIIAYGFLFHQDAYLRSGWNVLDFIIVFLGVFTAILEQVNVIQSNTAP MSSKGAGLDVKALRAFRVLRPLRLVSGVPSLQVVLNSIFKAMLPLFHIALLVLFMVIIYA IIGLELFKGKMHKTCYYIGTDIVATVENEKPSPCARTGSGRPCTINGSECRGGWPGPNHG ITHFDNFGFSMLTVYQCITMEGWTDVLYWVNDAIGNEWPWIYFVTLILLGSFFILNLVLG VLSGEFTKEREKAKSRGTFQKLREKQQLEEDLRGYMSWITQGEVMDVEDLREGKLSLEEG GSDTESLYEIEGLNKIIQFIRHWRQWNRVFRWKCHDLVKSRVFYWLVILIVALNTLSIAS EHHNQPLWLTHLQDIANRVLLSLFTIEMLLKMYGLGLRQYFMSIFNRFDCFVVCSGILEL LLVESGAMTPLGISVLRCIRLLRLFKITKYWTSLSNLVASLLNSIRSIASLLLLLFLFII IFALLGMQLFGGRYDFEDTEVRRSNFDNFPQALISVFQVLTGEDWNSVMYNGIMAYGGPS YPGVLVCIYFIILFVCGNYILLNVFLAIAVDNLAEAESLTSAQKAKAEERKRRKMSRGLP DKTEEEKSVMAKKLEQKPKGEGIPTTAKLKVDEFESNVNEVKDPYPSADFPGDDEEDEPE IPVSPRPRPLAELQLKEKAVPIPEASSFFIFSPTNKVRVLCHRIVNATWFTNFILLFILL SSAALAAEDPIRAESVRNQILGYFDIAFTSVFTVEIVLKMTTYGAFLHKGSFCRNYFNIL DLLVVAVSLISMGLESSTISVVKILRVLRVLRPLRAINRAKGLKHVVQCVFVAIRTIGNI VLVTTLLQFMFACIGVQLFKGKFFSCNDLSKMTEEECRGYYYVYKDGDPTQMELRPRQWI HNDFHFDNVLSAMMSLFTVSTFEGWPQLLYRAIDSNEEDMGPVYNNRVEMAIFFIIYIIL IAFFMMNIFVGFVIVTFQEQGETEYKNCELDKNQRQCVQYALKARPLRCYIPKNPYQYQV WYVVTSSYFEYLMFALIMLNTICLGMQHYHQSEEMNHISDILNVAFTIIFTLEMILKLLA FKARGYFGDPWNVFDFLIVIGSIIDVILSEIDTFLASSGGLYCLGGGCGNVDPDESARIS SAFFRLFRVMRLIKLLSRAEGVRTLLWTFIKSFQALPYVALLIVMLFFIYAVIGMQMFGK IALVDGTQINRNNNFQTFPQAVLLLFRCATGEAWQEILLACSYGKLCDPESDYAPGEEYT CGTNFAYYYFISFYMLCAFLIINLFVAVIMDNFDYLT
An Improved Method for Modeling Voltage-Gated Ion Channels at Atomic Accuracy Applied to Human CavChannels. Martinez-Ortiz, W., Cardozo, T.J. Cell Rep (2018) 23:1399-1408. DOI 10.1016/j.celrep.2018.04.024 · PubMed
Other PDB entries of the same protein (UniProt P07293 (AlphaFold model), which also has an AlphaFold model), best resolution first:
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