6HYP: Rea1 Wild type ADP state

Rea1 Wild type ADP state (AAA+ ring part). Determined by electron microscopy at 4.4 Å resolution. Released 12 Dec 2018.

Method
Electron microscopy
Resolution
4.4 Å
Organism
Saccharomyces cerevisiae
Chains
1
Atoms
12,392
Mol. weight
549.49 kDa
Ligands
ADP
Released
12 Dec 2018

Explore 6HYP in 3D Show helices and sheets RCSB PDB PDBe

Secondary structure: helices and β-sheets

6HYP contains 111 α-helices and 63 β-strands across 1 chain. Residue ranges use author residue numbering, as in the PDB file, from PDBe. To see them in 3D, choose the Cartoon representation with Secondary structure coloring: helices, sheets and coils get different colors.

Chain A: 111 helices, 63 β-strands

ElementResiduesLengthSheet
α-helix20-223
α-helix23-297
α-helix74-818
α-helix87-9610
α-helix116-1194
α-helix124-13815
α-helix145-1517
α-helix155-1617
α-helix168-1703
α-helix172-1765
α-helix184-1896
α-helix209-21810
α-helix239-24911
β-strand26511
β-strand27211
α-helix278-2803
α-helix294-30411
β-strand311-31222
β-strand313-31423
α-helix321-33111
β-strand338-33922
β-strand34212
β-strand355-35734
β-strand366-36834
α-helix369-3702
α-helix371-3788
β-strand381-38552
α-helix394-4018
α-helix404-4063
α-helix4071
β-strand40815
α-helix4091
β-strand41615
β-strand423-42752
β-strand456-45723
α-helix465-4717
α-helix481-49111
α-helix494-4974
α-helix513-5208
α-helix523-5264
α-helix541-5477
α-helix568-5703
α-helix632-64413
β-strand649-65356
α-helix660-6656
β-strand673-67756
β-strand688-68927
α-helix701-7099
α-helix718-72811
α-helix737-74812
α-helix783-79513
β-strand811-81227
α-helix815-8217
β-strand825-82956
α-helix838-8436
β-strand85418
β-strand86518
β-strand873-87756
α-helix887-8937
β-strand896-89836
α-helix911-9144
α-helix930-9378
α-helix956-9638
α-helix965-9673
α-helix975-9784
α-helix998-10036
β-strand101719
β-strand102419
α-helix1059-107113
β-strand1080-1082310
α-helix1089-109911
β-strand1106-1108310
α-helix1136-11394
β-strand1147-1149310
β-strand1173-1175311
β-strand1180-1182311
β-strand1191-1194410
α-helix1195-11973
β-strand1216-1218310
α-helix1225-12328
α-helix1237-12404
α-helix1243-12453
α-helix1261-127616
α-helix1285-129612
β-strand1300112
β-strand1302112
α-helix1306-131712
α-helix1344-135815
α-helix1362-13632
β-strand1364113
β-strand1366114
α-helix1374-138411
α-helix1401-14044
β-strand1406115
β-strand1475115
α-helix1478-14847
β-strand1488-1492514
α-helix1499-15046
β-strand1514116
α-helix1526-15272
β-strand1528116
β-strand1534-1538514
α-helix1547-15493
β-strand1559113
α-helix1565-15662
α-helix1572-15776
α-helix1585-159915
α-helix1607-162115
α-helix1631-16344
α-helix1637-16404
α-helix1644-16474
α-helix1653-166715
α-helix1725-173410
α-helix1735-17373
β-strand1742117
β-strand1745-1746218
α-helix1753-176311
β-strand1769-1770217
β-strand1773119
β-strand1811-1814417
β-strand1815119
α-helix1825-18306
β-strand1838-1839220
β-strand1846-1847220
β-strand1854-1857417
β-strand1858-1859218
α-helix1873-18764
β-strand1882-1883218
α-helix1889-18957
α-helix1907-192418
α-helix1939-194911
α-helix1962-19654
α-helix1976-19794
α-helix1980-19889
β-strand2006-2008321
β-strand2011-2013321
α-helix2014-20152
α-helix2034-204512
β-strand2050-2053422
α-helix2062-20709
β-strand2075-2079523
α-helix2085-20884
β-strand2090-2094524
α-helix2099-211921
α-helix2127-214216
α-helix2150-215910
α-helix2167-218317
α-helix2184-21863
β-strand2193-2196424
α-helix2198-22058
β-strand2208-2212523
α-helix2222-22265
α-helix2251-22533
β-strand2258-2260323
β-strand2261-2262222
α-helix2271-22733
β-strand2278-2281422
α-helix2285-22884
α-helix2338-235114
α-helix2371-238212
α-helix2390-240213
α-helix2408-24147
α-helix2416-242510
α-helix2430-24323
α-helix2446-24505
α-helix2461-248727
α-helix2496-25038
α-helix2518-253114
α-helix2545-25506
α-helix2552-25609
α-helix2568-257811
α-helix2584-25863
α-helix2919-294931
α-helix2958-29603

Molecules and chains

MoleculeChainsTypeLengthOrganismUniProt
Midasin,MidasinAprotein4863Saccharomyces cerevisiaeQ12019
Sequence of entity 1 (A), FASTA
>6HYP_1 Midasin,Midasin (chains A)
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXPSVPECFTIEKKSSYFIIEPQDLSTKVASICGVIVPKVHTIHDKVFYPLT
FVPTHKTVSSLRQLGRKIQNSTPIMLIGKAGSGKTFLINELSKYMGCHDSIVKIHLGEQT
DAKLLIGTYTSGDKPGTFEWRAGVLATAVKEGRWVLIEDIDKAPTDVLSILLSLLEKREL
TIPSRGETVKAANGFQLISTVRINEDHQKDSSNKIYNLNMIGMRIWNVIELEEPSEEDLT
HILAQKFPILTNLIPKLIDSYKNVKSIYMNTKFISLNKGAHTRVVSVRDLIKLCERLDIL
FKNNGINKPDQLIQSSVYDSIFSEAADCFAGAIGEFKALEPIIQAIGESLDIASSRISLF
LTQHVPTLENLDDSIKIGRAVLLKEKLNIQKKSMNSTLFAFTNHSLRLMEQISVCIQMTE
PVLLVGETGTGKTTVVQQLAKMLAKKLTVINVSQQTETGDLLGGYKPVNSKTVAVPIQEN
FETLFNATFSLKKNEKFHKMLHRCFNKNQWKNVVKLWNEAYKMAQSILKITNTENENENA
KKKKRRLNTHEKKLLLDKWADFNDSVKKFEAQSSSIENSFVFNFVEGSLVKTIRAGEWLL
LDEVNLATADTLESISDLLTEPDSRSILLSEKGDAEPIKAHPDFRIFACMNPATDVGKRD
LPMGIRSRFTEIYVHSPERDITDLLSIIDKYIGKYSVSDEWVGNDIAELYLEAKKLSDNN
TIVDGSNQKPHFSIRTLTRTLLYVTDIIHIYGLRRSLYDGFCMSFLTLLDQKSEAILKPV
IEKFTLGRLKNVKSIMSQTPPSPGPDYVQFKHYWMKKGPNTIQEQAHYIITPFVEKNMMN
LVRATSGKRFPVLIQGPTSSGKTSMIKYLADITGHKFVRINNHEHTDLQEYLGTYVTDDT
GKLSFKEGVLVEALRKGYWIVLDELNLAPTDVLEALNRLLDDNRELFIPETQEVVHPHPD
FLLFATQNPPGIYGGRKILSRAFRNRFLELHFDDIPQDELEIILRERCQIAPSYAKKIVE
VYRQLSIERSASRLFEQKNSFATLRDLFRWALRDAVGYEQLAASGYMLLAERCRTPQEKV
TVKKTLEKVMKVKLDMDQYYASLEDKSLEAIGSVTWTKGMRRLSVLVSSCLKNKEPVLLV
GETGCGKTTICQLLAQFMGRELITLNAHQNTETGDILGAQRPVRNRSEIQYKLIKSLKTA
LNIANDQDVDLKELLQLYSKSDNKNIAEDVQLEIQKLRDSLNVLFEWSDGPLIQAMRTGN
FFLLDEISLADDSVLERLNSVLEPERSLLLAEQGSSDSLVTASENFQFFATMNPGGDYGK
KELSPALRNRFTEIWVPSMEDFNDVNMIVSSRLLEDLKDLANPIVKFSEWFGKKLGGGNA
TSGVISLRDILAWVEFINKVFPKIQNKSTALIQGASMVFIDALGTNNTAYLAENENDLKS
LRTECIIQLLKLCGDDLELQQIETNEIIVTQDELQVGMFKIPRFPDAQSSSFNLTAPTTA
SNLVRVVRAMQVHKPILLEGSPGVGKTSLITALANITGNKLTRINLSEQTDLVDLFGADA
PGERSGEFLWHDAPFLRAMKKGEWVLLDEMNLASQSVLEGLNACLDHRGEAYIPELDISF
SCHPNFLVFAAQNPQYQGGGRKGLPKSFVNRFSVVFIDMLTSDDLLLIAKHLYPSIEPDI
IAKMIKLMSTLEDQVCKRKLWGNSGSPWEFNLRDTLRWLKLLNQYSICEDVDVFDFVDII
VKQRFRTISDKNKAQLLIEDIFGKFSTKENFFKLTEDYVQINNEVALRNPHYRYPITQNL
FPLECNVAVYESVLKAINNNWPLVLVGPSNSGKTETIRFLASILGPRVDVFSMNSDIDSM
DILGGYEQVDLTRQISYITEELTNIVREIISMNMKLSPNATAIMEGLNLLKYLLNNIVTP
EKFQDFRNRFNRFFSHLEGHPLLKTMSMNIEKMTEIITKEASVKFEWFDGMLVKAVEKGH
WLILDNANLCSPSVLDRLNSLLEIDGSLLINECSQEDGQPRVLKPHPNFRLFLTMDPKYG
ELSRAMRNRGVEIYIDELHSRSTAFDRLTLGFELGENIDFVSIDDGIKKIKLNEPDMSIP
LKHYVPSYLSRPCIFAQVHDILLLSDEEPIEESLAAVIPISHLGEVGKWANNVLNCTEYS
EKKIAERLYVFITFLTDMGVLEKINNLYKPANLKFQKALGLHDKQLTEETVSLTLNEYVL
PTVSKYSDKIKSPESLYLLSSLRLLLNSLNALKLINEKSTHGKIDELTYIELSAAAFNGR
HLKNIPRIPIFCILYNILTVMSENLKTESLFCGSNQYQYYWDLLVIVIAALETAVTKDEA
RLRVYKELIDSWIASVKSKSDIEITPFLNINLEFTDVLQLSRGHSITLLWDIFRKNYPTT
SNSWLAFEKLINLSEKFDKVRLLQFSESYNSIKDLMDVFRLLNDDVLNNKLSEFNLLLSK
LEDGINELELISNKFLNKRKHYFADEFDNLIRYTFSVDTAELIKELAPASSLATQKLTKL
ITNKYNYPPIFDVLWTEKNAKLTSFTSTIFSSQFLEDVVRKSNNLKSFSGNQIKQSISDA
ELLLSSTIKCSPNLLKSQMEYYKNMLLSWLRKVIDIHVGGDCLKLTLKELCSLIEEKTAS
ETRVTFAEYIFPALDLAESSKSLEELGEAWITFGTGLLLLFVPDSPYDPAIHDYVLYDLF
LKTKTFSQNLMKSWRNVRKVISGDEEIFTEKLINTISDDDAPQSPRVYRTGMSIDSLFDE
WMAFLSSTMSSRQIKELVSSYKCNSDQSDRRLEMLQQNSAHFLNRLESGYSKFADLNDIL
AGYIYSINFGFDLLKLQKSKDRASFQISPLWSMDPINISCAENVLSAYHELSRFFKKGDM
EDTSIEKVLMYFLTLFKFHKRDTNLLEIFEAALYTLYSRWSVRRFRQEQEENEKSNMFKF
NDNSDDYEADFRKLFPDYEDTALVTNEKDISSPENLDDIYFKLADTYISVFDKDHDANFS
SELKSGAIITTILSEDLKNTRIEELKSGSLSAVINTLDAETQSFKNTEVFGNIDFYHDFS
IPEFQKAGDIIETVLKSVLKLLKQWPEHATLKELYRVSQEFLNYPIKTPLARQLQKIEQI
YTYLAEWEKYASSEVSLNNTVKLITDLIVSWRKLELRTWKGLFNSEDAKTRKSIGKWWFY
LYESIVISNFVSEKKETAPNATLLVSSLNLFFSKSTLGEFNARLDLVKAFYKHIQLIGLR
SSKIAGLLHNTIKFYYQFKPLIDERITNGKKSLEKEIDDIILLASWKDVNVDALKQSSRK
SHNNLYKIVRKYRDLLNGDAKTIIEAGLLYSNENKLKLPTLKQHFYEDPNLEASKNLVKE
ISTWSMRAAPLRNIDTVASNMDSYLEKISSQEFPNFADLASDFYAEAERLRKETPNVYTK
ENKKRLAYLKTQKSKLLGDALKELRRIGLKVNFREDIQKVQSSTTTILANIAPFNNEYLN
SSDAFFFKILDLLPKLRSAASNPSDDIPVAAIERGMALAQSLMFSLITVRHPLSEFTNDY
CKINGMMLDLEHFTCLKGDIVHSSLKANVDNVRLFEKWLPSLLDYAAQTLSVISKYSATS
EQQKILLDAKSTLSSFFVHFNSSRIFDSSFIESYSRFELFINELLKKLENAKETGNAFVF
DIIIEWIKANKGGPIKKEQKRGPSVEDVEQAFRRTFTSIILSFQKVIGDGIESISETDDN
WLSASFKKVMVNVKLLRSSVVSKNIETALSLLKDFDFTTTESIYVKSVISFTLPVITRYY
NAMTVVLERSRIYYTNTSRGMYILSTILHSLAKNGFCSPQPPSEEVDDKNLQEGTGLGDG
EGAQNNNKDVEQDEDLTEDAQNENKEQQDKDERDDENEDDAVEMEGDMAGELEDLSNGEE
NDDEDTDSEEEELDEEIDDLNEDDPNAIDDKMWDDKASDNSKEKDTDQNLDGKNQEEDVQ
AAENDEQQRDNKEGGDEDPNAPEDGDEEIENDENAEEENDVGEQEDEVKDEEGEDLEANV
PEIETLDLPEDMNLDSEHEESDEDVDMSDGMPDDLNKEEVGNEDEEVKQESGIESDNEND
EPGPEEDAGETETALDEEEGAEEDVDMTNDEGKEDEENGPEEQAMSDEEELKQDAAMEEN
KEKGGEQNTEGLDGVEEKADTEDIDQEAAVQQDSGSKGAGADATDTQEQDDVGGSGTTQN
TYEEDQEDVTKNNEESREEATAALKQLGDSMKEYHRRRQDIKEAQTNGEEDENLEKNNER
PDEFEHVEGANTETDTQALGSATQDQLQTIDEDMAIDDDREEQEVDQKELVEDADDEKMD
IDEEEMLSDIDAHDANNDVDSKKSGFIGKRKSEEDFENELSNEHFSADQEDDSEIQSLIE
NIEDNPPDASASLTPERSLEESRELWHKSEISTADLVSRLGEQLRLILEPTLATKLKGDY
KTGKRLNMKRIIPYIASQFRKDKIWLRRTKPSKRQYQIMIALDDSKSMSESKCVKLAFDS
LCLVSKTLTQLEAGGLSIVKFGENIKEVHSFDQQFSNESGARAFQWFGFQETKTDVKKLV
AESTKIFERARAMVHNDQWQLEIVISDGICEDHETIQKLVRRARENKIMLVFVIIDGITS
NESILDMSQVNYIPDQYGNPQLKITKYLDTFPFEFYVVVHDISELPEMLSLILRQYFTDL
ASS

Ligands and cofactors

IDNameFormulaCopies
ADPAdenosine-5'-diphosphateC10 H15 N5 O10 P22

Primary citation

The CryoEM structure of the Saccharomyces cerevisiae ribosome maturation factor Rea1. Sosnowski, P., Urnavicius, L., Boland, A. et al. Elife (2018) 7. DOI 10.7554/eLife.39163 · PubMed

Other PDB entries of the same protein (UniProt Q12019), best resolution first:

Browse structure collections

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