6M62: Probable metalloprotease ARX1

Name: PDB 6M62: Cryo-Em structure of eukaryotic pre-60S ribosome subunit from Saccharomyces cerevisiae rpf2 delta 255-344 strain, C4 state.
Published: 2020-08-26
License: https://creativecommons.org/publicdomain/zero/1.0/
Keywords: ribosome

Cryo-Em structure of eukaryotic pre-60S ribosome subunit from Saccharomyces cerevisiae rpf2 delta 255-344 strain, C4 state. Determined by electron microscopy at 3.2 Å resolution. Released 26 Aug 2020.

Method: Electron microscopy
Resolution: 3.2 Å
Organisms: Saccharomyces cerevisiae S288C, Saccharomyces cerevisiae S288c
Chains: 58
Atoms: 153,289
Mol. weight: 2669.35 kDa
Ligands: ZN, GTP, MG
Released: 26 Aug 2020

Explore 6M62 in 3D Show helices and sheets RCSB PDB PDBe

Secondary structure: helices and β-sheets

6M62 contains 413 α-helices and 443 β-strands across 54 chains. Residue ranges use author residue numbering, as in the PDB file, from PDBe. To see them in 3D, choose the Cartoon representation with Secondary structure coloring: helices, sheets and coils get different colors.

Chain 4: 17 helices, 18 β-strands

Element	Residues	Length	Sheet
α-helix	22-27	6
α-helix	30-45	16
α-helix	61-76	16
β-strand	91-97	7	22
β-strand	100	1	23
α-helix	111-117	7
α-helix	126-130	5
β-strand	139-147	9	22
β-strand	150-158	9	22
α-helix	171-173	3
α-helix	180-201	22
α-helix	220-234	15
β-strand	237-238	2	22
α-helix	239	1
β-strand	243-247	5	22
β-strand	248	1	24
β-strand	251	1	24
β-strand	266-268	3	22
α-helix	272-275	4
β-strand	315-324	10	22
β-strand	333-339	7	23
β-strand	360-361	2	25
α-helix	373-384	12
β-strand	390	1	25
α-helix	406-428	23
β-strand	433-434	2	25
β-strand	438-444	7	23
α-helix	445-448	4
α-helix	482-490	9
β-strand	500-509	10	22
β-strand	523-525	3	22
α-helix	529-532	4
α-helix	533-536	4
α-helix	548-559	12
β-strand	570	1	22

Chain 5: 2 helices, 0 β-strands

Element	Residues	Length	Sheet
α-helix	45-96	52
α-helix	101-111	11

Chain a: 5 helices, 5 β-strands

Element	Residues	Length	Sheet
α-helix	78-81	4
α-helix	84-91	8
β-strand	101-103	3	61
α-helix	104-107	4
β-strand	111-112	2	62
β-strand	124-127	4	61
β-strand	129-130	2	62
α-helix	132-141	10
β-strand	145-147	3	61
α-helix	148	1

Chain A: 6 helices, 19 β-strands

Element	Residues	Length	Sheet
α-helix	6-12	7
β-strand	18	1	55
α-helix	34-38	5
β-strand	40-47	8	56
β-strand	50	1	57
α-helix	51	1
β-strand	57	1	57
β-strand	58-64	7	56
β-strand	71-77	7	56
α-helix	78	1
β-strand	79	1	58
β-strand	83	1	59
β-strand	87-91	5	56
β-strand	101-103	3	56
β-strand	112-114	3	56
β-strand	116	1	60
β-strand	126	1	60
β-strand	134-139	6	56
β-strand	145-149	5	56
β-strand	155-159	5	56
β-strand	163-166	4	56
α-helix	168	1
β-strand	169	1	58
α-helix	182-189	8
β-strand	193	1	55

Chain b: 29 helices, 6 β-strands

Element	Residues	Length	Sheet
α-helix	14-27	14
α-helix	39-67	29
α-helix	76-86	11
α-helix	88-116	29
α-helix	122-141	20
α-helix	144-157	14
β-strand	170-174	5	67
α-helix	180-187	8
β-strand	205-211	7	67
β-strand	214-220	7	67
α-helix	236-245	10
β-strand	249-254	6	67
α-helix	264-274	11
α-helix	275-277	3
β-strand	284-288	5	67
α-helix	295-297	3
α-helix	300-309	10
β-strand	317-320	4	67
α-helix	325-347	23
α-helix	354-361	8
α-helix	380-382	3
α-helix	386-388	3
α-helix	400-406	7
α-helix	425-429	5
α-helix	441-444	4
α-helix	449-464	16
α-helix	486-511	26
α-helix	513-516	4
α-helix	521-523	3
α-helix	532-537	6
α-helix	543-555	13
α-helix	562-567	6
α-helix	596-610	15
α-helix	613-615	3
α-helix	632-634	3

Chain B: 12 helices, 16 β-strands

Element	Residues	Length	Sheet
α-helix	27-29	3
α-helix	40-41	2
β-strand	43	1	63
β-strand	45-60	16	64
β-strand	70-80	11	64
α-helix	82-83	2
β-strand	84-96	13	65
β-strand	98-106	9	65
α-helix	112-117	6
α-helix	131-137	7
α-helix	143-153	11
β-strand	157-163	7	65
α-helix	166-168	3
β-strand	178-182	5	65
β-strand	183	1	63
α-helix	188-197	10
β-strand	202-203	2	65
β-strand	214-221	8	64
β-strand	225-227	3	66
α-helix	229-232	4
β-strand	268-270	3	66
β-strand	273-286	14	64
α-helix	307	1
β-strand	321-325	5	64
β-strand	335-339	5	64
α-helix	348-350	3
β-strand	356-359	4	64
α-helix	373-380	8

Chain c: 4 helices, 4 β-strands

Element	Residues	Length	Sheet
α-helix	10-14	5
β-strand	22-25	4	72
α-helix	28-36	9
β-strand	41-44	4	72
α-helix	50-63	14
β-strand	66-69	4	72
α-helix	74-80	7
β-strand	89-94	6	72

Chain C: 18 helices, 13 β-strands

Element	Residues	Length	Sheet
β-strand	8-9	2	68
β-strand	15	1	68
α-helix	32-43	12
β-strand	63	1	69
β-strand	76	1	69
β-strand	88	1	69
α-helix	115-128	14
α-helix	134-137	4
β-strand	150-152	3	68
α-helix	154-156	3
α-helix	162-172	11
α-helix	175-180	6
β-strand	186-187	2	70
β-strand	199-200	2	70
β-strand	206-209	4	68
α-helix	215-220	6
β-strand	226-229	4	68
α-helix	235-238	4
α-helix	240-242	3
β-strand	248-251	4	68
α-helix	252-262	11
β-strand	264	1	71
β-strand	267	1	71
α-helix	287-290	4
α-helix	293-297	5
α-helix	307-309	3
α-helix	314-316	3
α-helix	321-326	6
α-helix	331-337	7
α-helix	339-341	3
α-helix	353-360	8

46 more chain groups are not listed. Open the entry in the viewer and use the sequence panel to see them.

Molecules and chains

Molecule	Chains	Type	Length	Organism	UniProt
RDN25-1 rRNA	1	RNA	3396	Saccharomyces cerevisiae S288C
RDN58-1 rRNA	2	RNA	158	Saccharomyces cerevisiae S288C
RDN5-2 rRNA	3	RNA	121	Saccharomyces cerevisiae S288C
Probable metalloprotease ARX1	4	protein	593	Saccharomyces cerevisiae S288C	Q03862 (AlphaFold model)
rRNA-processing protein CGR1	5	protein	120	Saccharomyces cerevisiae S288c	P53188 (AlphaFold model)
ITS2-1 miscRNA	6	RNA	232	Saccharomyces cerevisiae S288C
60S ribosomal protein L2-A	A	protein	254	Saccharomyces cerevisiae S288c	P0CX45 (AlphaFold model)
60S ribosomal protein L3	B	protein	387	Saccharomyces cerevisiae S288c	P14126 (AlphaFold model)
60S ribosomal protein L4-A	C	protein	362	Saccharomyces cerevisiae S288c	P10664
60S ribosomal protein L5	D	protein	297	Saccharomyces cerevisiae S288c	P26321
60S ribosomal protein L6-A	E	protein	176	Saccharomyces cerevisiae S288c	Q02326
60S ribosomal protein L7-A	F	protein	244	Saccharomyces cerevisiae S288c	P05737

46 more molecules are not listed.

Sequence of entity 1 (1), FASTA

>6M62_1 RDN25-1 rRNA (chains 1)
GUUUGACCUCAAAUCAGGUAGGAGUACCCGCUGAACUUAAGCAUAUCAAUAAGCGGAGGA
AAAGAAACCAACCGGGAUUGCCUUAGUAACGGCGAGUGAAGCGGCAAAAGCUCAAAUUUG
AAAUCUGGUACCUUCGGUGCCCGAGUUGUAAUUUGGAGAGGGCAACUUUGGGGCCGUUCC
UUGUCUAUGUUCCUUGGAACAGGACGUCAUAGAGGGUGAGAAUCCCGUGUGGCGAGGAGU
GCGGUUCUUUGUAAAGUGCCUUCGAAGAGUCGAGUUGUUUGGGAAUGCAGCUCUAAGUGG
GUGGUAAAUUCCAUCUAAAGCUAAAUAUUGGCGAGAGACCGAUAGCGAACAAGUACAGUG
AUGGAAAGAUGAAAAGAACUUUGAAAAGAGAGUGAAAAAGUACGUGAAAUUGUUGAAAGG
GAAGGGCAUUUGAUCAGACAUGGUGUUUUGUGCCCUCUGCUCCUUGUGGGUAGGGGAAUC
UCGCAUUUCACUGGGCCAGCAUCAGUUUUGGUGGCAGGAUAAAUCCAUAGGAAUGUAGCU
UGCCUCGGUAAGUAUUAUAGCCUGUGGGAAUACUGCCAGCUGGGACUGAGGACUGCGACG
UAAGUCAAGGAUGCUGGCAUAAUGGUUAUAUGCCGCCCGUCUUGAAACACGGACCAAGGA
GUCUAACGUCUAUGCGAGUGUUUGGGUGUAAAACCCAUACGCGUAAUGAAAGUGAACGUA
GGUUGGGGCCUCGCAAGAGGUGCACAAUCGACCGAUCCUGAUGUCUUCGGAUGGAUUUGA
GUAAGAGCAUAGCUGUUGGGACCCGAAAGAUGGUGAACUAUGCCUGAAUAGGGUGAAGCC
AGAGGAAACUCUGGUGGAGGCUCGUAGCGGUUCUGACGUGCAAAUCGAUCGUCGAAUUUG
GGUAUAGGGGCGAAAGACUAAUCGAACCAUCUAGUAGCUGGUUCCUGCCGAAGUUUCCCU
CAGGAUAGCAGAAGCUCGUAUCAGUUUUAUGAGGUAAAGCGAAUGAUUAGAGGUUCCGGG
GUCGAAAUGACCUUGACCUAUUCUCAAACUUUAAAUAUGUAAGAAGUCCUUGUUACUUAA
UUGAACGUGGACAUUUGAAUGAAGAGCUUUUAGUGGGCCAUUUUUGGUAAGCAGAACUGG
CGAUGCGGGAUGAACCGAACGUAGAGUUAAGGUGCCGGAAUACACGCUCAUCAGACACCA
CAAAAGGUGUUAGUUCAUCUAGACAGCCGGACGGUGGCCAUGGAAGUCGGAAUCCGCUAA
GGAGUGUGUAACAACUCACCGGCCGAAUGAACUAGCCCUGAAAAUGGAUGGCGCUCAAGC
GUGUUACCUAUACUCUACCGUCAGGGUUGAUAUGAUGCCCUGACGAGUAGGCAGGCGUGG
AGGUCAGUGACGAAGCCUAGACCGUAAGGUCGGGUCGAACGGCCUCUAGUGCAGAUCUUG
GUGGUAGUAGCAAAUAUUCAAAUGAGAACUUUGAAGACUGAAGUGGGGAAAGGUUCCACG
UCAACAGCAGUUGGACGUGGGUUAGUCGAUCCUAAGAGAUGGGGAAGCUCCGUUUCAAAG
GCCUGAUUUUAUGCAGGCCACCAUCGAAAGGGAAUCCGGUUAAGAUUCCGGAACCUGGAU
AUGGAUUCUUCACGGUAACGUAACUGAAUGUGGAGACGUCGGCGCGAGCCCUGGGAGGAG
UUAUCUUUUCUUCUUAACAGCUUAUCACCCCGGAAUUGGUUUAUCCGGAGAUGGGGUCUU
AUGGCUGGAAGAGGCCAGCACCUUUGCUGGCUCCGGUGCGCUUGUGACGGCCCGUGAAAA
UCCACAGGAAGGAAUAGUUUUCAUGCCAGGUCGUACUGAUAACCGCAGCAGGUCUCCAAG
GUGAACAGCCUCUAGUUGAUAGAAUAAUGUAGAUAAGGGAAGUCGGCAAAAUAGAUCCGU
AACUUCGGGAUAAGGAUUGGCUCUAAGGGUCGGGUAGUGAGGGCCUUGGUCAGACGCAGC
GGGCGUGCUUGUGGACUGCUUGGUGGGGCUUGCUCUGCUAGGCGGACUACUUGCGUGCCU
UGUUGUAGACGGCCUUGGUAGGUCUCUUGUAGACCGUCGCUUGCUACAAUUAACGAUCAA
CUUAGAACUGGUACGGACAAGGGGAAUCUGACUGUCUAAUUAAAACAUAGCAUUGCGAUG
GUCAGAAAGUGAUGUUGACGCAAUGUGAUUUCUGCCCAGUGCUCUGAAUGUCAAAGUGAA
GAAAUUCAACCAAGCGCGGGUAAACGGCGGGAGUAACUAUGACUCUCUUAAGGUAGCCAA
AUGCCUCGUCAUCUAAUUAGUGACGCGCAUGAAUGGAUUAACGAGAUUCCCACUGUCCCU
AUCUACUAUCUAGCGAAACCACAGCCAAGGGAACGGGCUUGGCAGAAUCAGCGGGGAAAG
AAGACCCUGUUGAGCUUGACUCUAGUUUGACAUUGUGAAGAGACAUAGAGGGUGUAGAAU
AAGUGGGAGCUUCGGCGCCAGUGAAAUACCACUACCUUUAUAGUUUCUUUACUUAUUCAA
UGAAGCGGAGCUGGAAUUCAUUUUCCACGUUCUAGCAUUCAAGGUCCCAUUCGGGGCUGA
UCCGGGUUGAAGACAUUGUCAGGUGGGGAGUUUGGCUGGGGCGGCACAUCUGUUAAACGA
UAACGCAGAUGUCCUAAGGGGGGCUCAUGGAGAACAGAAAUCUCCAGUAGAACAAAAGGG
UAAAAGCCCCCUUGAUUUUGAUUUUCAGUGUGAAUACAAACCAUGAAAGUGUGGCCUAUC
GAUCCUUUAGUCCCUCGGAAUUUGAGGCUAGAGGUGCCAGAAAAGUUACCACAGGGAUAA
CUGGCUUGUGGCAGUCAAGCGUUCAUAGCGACAUUGCUUUUUGAUUCUUCGAUGUCGGCU
CUUCCUAUCAUACCGAAGCAGAAUUCGGUAAGCGUUGGAUUGUUCACCCACUAAUAGGGA
ACGUGAGCUGGGUUUAGACCGUCGUGAGACAGGUUAGUUUUACCCUACUGAUGAAUGUUA
CCGCAAUAGUAAUUGAACUUAGUACGAGAGGAACAGUUCAUUCGGAUAAUUGGUUUUUGC
GGCUGUCUGAUCAGGCAUUGCCGCGAAGCUACCAUCCGCUGGAUUAUGGCUGAACGCCUC
UAAGUCAGAAUCCAUGCUAGAACGCGGUGAUUUCUUUGCUCCACACAAUAUAGAUGGAUA
CGAAUAAGGCGUCCUUGUGGCGUCGCUGAACCAUAGCAGGCUAGCAACGGUGCACUUGGC
GGAAAGGCCUUGGGUGCUUGCUGGCGAAUUGCAAUGUCAUUUUGCGUGGGGAUAAAUCAU
UUGUAUACGACUUAGAUGUACAACGGGGUAUUGUAAGCAGUAGAGUAGCCUUGUUGUUAC
GAUCUGCUGAGAUUAAGCCUUUGUUGUCUGAUUUGU

Sequence of entity 2 (2), FASTA

>6M62_2 RDN58-1 rRNA (chains 2)
AAACUUUCAACAACGGAUCUCUUGGUUCUCGCAUCGAUGAAGAACGCAGCGAAAUGCGAU
ACGUAAUGUGAAUUGCAGAAUUCCGUGAAUCAUCGAAUCUUUGAACGCACAUUGCGCCCC
UUGGUAUUCCAGGGGGCAUGCCUGUUUGAGCGUCAUUU

Sequence of entity 3 (3), FASTA

>6M62_3 RDN5-2 rRNA (chains 3)
GGUUGCGGCCAUAUCUACCAGAAAGCACCGUUUCCCGUCCGAUCAACUGUAGUUAAGCUG
GUAAGAGCCUGACCGAGUAGUGUAGUGGGUGACCAUACGCGAAACUCAGGUGCUGCAAUC
U

Sequence of entity 4 (4), FASTA

>6M62_4 Probable metalloprotease ARX1 (chains 4)
MALAISHEDTQILLKDKNILQESVLNKYRTAGQIAQTALKYVTSLINDSYHSKTTQRQLT
VPELCLLTDSFILTRLEQYYKNKVNERGIAIPTTIDIDQISGGWCPEIDDTQNLLNWNKG
KDSTFASSVTGTLRPGDLVKITLGVHIDGYTSEVSHTMVIYPVDETKPILQPTGPLLGGK
ADAVAAAHIAMETVVALLACALTPEKLPASLGGTSSGITGQLIRTIVDTIARSYNCGVVP
GSRVRRIRRFLAGQNEGIVAEREYKGVVWTESHQEADLLSNTDAKDLTVVDRGQSTPFTN
VSAIPSDDFVVQSGEVYLIDLKMASLEHCTKKGLVTLETVDSYTGKSHKAGELIARPGAY
VRDFAQTHILKLKTSRQLLTKIDKQGVYPFKLSHLSSNFPFVHENEEELQSLKKDLKSFR
LGMSEISNNYLCVESPIQIARWVPWDHILKATNPNGNLSYDATSTLTLPGHELPLPKLGV
SAIKLKSLMNSTKESISLPVARECNTIVLCDSSVSTTDRPELLRLTGGSKTCQPSWIHSQ
HELNPQDSIVQGIFQLATLAKDKRFGLLLKETQPMKQKSVETSNGGVEETMKM

Sequence of entity 5 (5), FASTA

>6M62_5 rRNA-processing protein CGR1 (chains 5)
MVNETGESQKAAKGTPVSGKVWKAEKTPLRAKSRVVKNKKLTSWELKKQKRLEDKQFKER
LKALKDEKEEARQAKITMLKERREKKEENERYERLAAKMHAKKVERMRRREKRNKALKER

Sequence of entity 6 (6), FASTA

>6M62_6 ITS2-1 miscRNA (chains 6)
CCUUCUCAAACAUUCUGUUUGGUAGUGAGUGAUACUCUUUGGAGUUAACUUGAAAUUGCU
GGCCUUUUCAUUGGAUGUUUUUUUUCCAAAGAGAGGUUUCUCUGCGUGCUUGAGGUAUAA
UGCAAGUACGGUCGUUUUAGGUUUUACCAACUGCGGCUAAUCUUUUUUUAUACUGAGCGU
AUUGGAACGUUAUCGAUAAGAAGAGAGCGUCUAGGCGAACAAUGUUCUUAAA

Sequence of entity 7 (A), FASTA

>6M62_7 60S ribosomal protein L2-A (chains A)
MGRVIRNQRKGAGSIFTSHTRLRQGAAKLRTLDYAERHGYIRGIVKQIVHDSGRGAPLAK
VVFRDPYKYRLREEIFIANEGVHTGQFIYAGKKASLNVGNVLPLGSVPEGTIVSNVEEKP
GDRGALARASGNYVIIIGHNPDENKTRVRLPSGAKKVISSDARGVIGVIAGGGRVDKPLL
KAGRAFHKYRLKRNSWPKTRGVAMNPVDHPHGGGNHQHIGKASTISRGAVSGQKAGLIAA
RRTGLLRGSQKTQD

Sequence of entity 8 (B), FASTA

>6M62_8 60S ribosomal protein L3 (chains B)
MSHRKYEAPRHGHLGFLPRKRAASIRARVKAFPKDDRSKPVALTSFLGYKAGMTTIVRDL
DRPGSKFHKREVVEAVTVVDTPPVVVVGVVGYVETPRGLRSLTTVWAEHLSDEVKRRFYK
NWYKSKKKAFTKYSAKYAQDGAGIERELARIKKYASVVRVLVHTQIRKTPLAQKKAHLAE
IQLNGGSISEKVDWAREHFEKTVAVDSVFEQNEMIDAIAVTKGHGFEGVTHRWGTKKLPR
KTHRGLRKVACIGAWHPAHVMWSVARAGQRGYHSRTSINHKIYRVGKGDDEANGATSFDR
TKKTITPMGGFVHYGEIKNDFIMVKGCIPGNRKRIVTLRKSLYTNTSRKALEEVSLKWID
TASKFGKGRFQTPAEKHAFMGTLKKDL

Sequence of entity 9 (C), FASTA

>6M62_9 60S ribosomal protein L4-A (chains C)
MSRPQVTVHSLTGEATANALPLPAVFSAPIRPDIVHTVFTSVNKNKRQAYAVSEKAGHQT
SAESWGTGRAVARIPRVGGGGTGRSGQGAFGNMCRGGRMFAPTKTWRKWNVKVNHNEKRY
ATASAIAATAVASLVLARGHRVEKIPEIPLVVSTDLESIQKTKEAVAALKAVGAHSDLLK
VLKSKKLRAGKGKYRNRRWTQRRGPLVVYAEDNGIVKALRNVPGVETANVASLNLLQLAP
GAHLGRFVIWTEAAFTKLDQVWGSETVASSKVGYTLPSHIISTSDVTRIINSSEIQSAIR
PAGQATQKRTHVLKKNPLKNKQVLLRLNPYAKVFAAEKLGSKKAEKTGTKPAAVFTETLK
HD

Sequence of entity 10 (D), FASTA

>6M62_10 60S ribosomal protein L5 (chains D)
MAFQKDAKSSAYSSRFQTPFRRRREGKTDYYQRKRLVTQHKAKYNTPKYRLVVRFTNKDI
ICQIISSTITGDVVLAAAYSHELPRYGITHGLTNWAAAYATGLLIARRTLQKLGLDETYK
GVEEVEGEYELTEAVEDGPRPFKVFLDIGLQRTTTGARVFGALKGASDGGLYVPHSENRF
PGWDFETEEIDPELLRSYIFGGHVSQYMEELADDDEERFSELFKGYLADDIDADSLEDIY
TSAHEAIRADPAFKPTEKKFTKEQYAAESKKYRQTKLSKEERAARVAAKIAALAGQQ

Sequence of entity 11 (E), FASTA

>6M62_11 60S ribosomal protein L6-A (chains E)
MSAQKAPKWYPSEDVAALKKTRKAARPQKLRASLVPGTVLILLAGRFRGKRVVYLKHLED
NTLLISGPFKVNGVPLRRVNARYVIATSTKVSVEGVNVEKFNVEYFAKEKLTKKEKKEAN
LFPEQQNKEIKAERVEDQKVVDKALIAEIKKTPLLKQYLSASFSLKNGDKPHMLKF

Sequence of entity 12 (F), FASTA

>6M62_12 60S ribosomal protein L7-A (chains F)
MAAEKILTPESQLKKSKAQQKTAEQVAAERAARKAANKEKRAIILERNAAYQKEYETAER
NIIQAKRDAKAAGSYYVEAQHKLVFVVRIKGINKIPPKPRKVLQLLRLTRINSGTFVKVT
KATLELLKLIEPYVAYGYPSYSTIRQLVYKRGFGKINKQRVPLSDNAIIEANLGKYGILS
IDDLIHEIITVGPHFKQANNFLWPFKLSNPSGGWGVPRKFKHFIQGGSFGNREEFINKLV
KSMN

Ligands and cofactors

ID	Name	Formula	Copies
ZN	Zinc ion	Zn	4
GTP	Guanosine-5'-triphosphate	C10 H16 N5 O14 P3	2
MG	Magnesium ion	Mg	2

Primary citation

Coupling of 5S RNP rotation with maturation of functional centers during large ribosomal subunit assembly. Micic, J., Li, Y., Wu, S. et al. Nat Commun (2020) 11:3751-3751. DOI 10.1038/s41467-020-17534-5 · PubMed

Other PDB entries of the same protein (UniProt Q03862 (AlphaFold model), which also has an AlphaFold model), best resolution first:

7UOO 2.34 Å, Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state
7V08 2.36 Å, Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a Spb1…
7UQB 2.43 Å, Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a…
7UQZ 2.44 Å, Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a SPB1…
8HFR 2.64 Å, NPC-trapped pre-60S particle
6YLG 3.0 Å, Rix1-Rea1 pre-60S particle - 60S core, body 1 (rigid body refinement)
3JCT 3.08 Å, Cryo-em structure of eukaryotic pre-60S ribosomal subunits
6YLH 3.1 Å, Rix1-Rea1 pre-60S particle - full composite structure
6RZZ 3.2 Å, Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles
5APO 3.41 Å, Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and C-terminally…
7Z34 3.8 Å, Structure of pre-60S particle bound to DRG1(AFG2).
6FT6 3.9 Å, Structure of the Nop53 pre-60S particle bound to the exosome nuclear cofactors

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