6T9J: SAGA Tra1 module

SAGA Tra1 module. Determined by electron microscopy at 3.4 Å resolution. Released 29 Jan 2020.

Method
Electron microscopy
Resolution
3.4 Å
Organism
Saccharomyces cerevisiae S288C
Chains
3
Atoms
29,550
Mol. weight
562.7 kDa
Released
29 Jan 2020

Explore 6T9J in 3D Show helices and sheets RCSB PDB PDBe

Secondary structure: helices and β-sheets

6T9J contains 201 α-helices and 23 β-strands across 3 chains. Residue ranges use author residue numbering, as in the PDB file, from PDBe. To see them in 3D, choose the Cartoon representation with Secondary structure coloring: helices, sheets and coils get different colors.

Chain B: 2 helices, 0 β-strands

ElementResiduesLengthSheet
α-helix404-4129
α-helix476-48712
Chain I: 3 helices, 2 β-strands
ElementResiduesLengthSheet
α-helix358-3603
α-helix371-3755
β-strand37611
β-strand40211
α-helix404-4063
Chain T: 196 helices, 21 β-strands
ElementResiduesLengthSheet
α-helix4-96
α-helix28-303
α-helix45-6016
α-helix73-8513
α-helix92-965
α-helix100-1034
α-helix118-13114
α-helix142-15615
α-helix232-2398
α-helix251-2533
α-helix294-30815
α-helix311-3133
α-helix325-33410
α-helix342-35514
α-helix360-3689
α-helix375-3773
α-helix388-40215
α-helix408-42316
α-helix429-45224
α-helix454-4563
α-helix457-47923
α-helix482-49716
α-helix513-5197
α-helix562-5665
α-helix573-5753
α-helix579-60022
α-helix601-6044
α-helix605-6073
β-strand61912
β-strand62312
α-helix628-64316
α-helix644-6463
α-helix677-68913
α-helix695-71319
α-helix717-7193
α-helix720-7278
α-helix733-74715
α-helix748-7503
α-helix756-77520
α-helix789-79810
α-helix807-81812
α-helix828-8303
α-helix832-84312
α-helix854-8629
α-helix880-8889
α-helix894-90613
α-helix918-9203
α-helix921-9288
α-helix929-9313
α-helix943-9519
β-strand977-98043
β-strand98214
β-strand989-99243
α-helix997-10059
α-helix1011-103020
α-helix1039-104810
α-helix1069-108820
α-helix1089-10913
α-helix1096-112025
α-helix1121-11233
α-helix1149-11535
α-helix1158-117922
α-helix1181-11844
α-helix1189-120012
α-helix1206-122217
α-helix1229-12324
α-helix1234-124613
α-helix1254-127118
α-helix1284-129310
α-helix1301-131212
α-helix1322-13254
α-helix1330-133910
α-helix1347-136216
α-helix1372-138211
α-helix1405-142319
α-helix1437-144610
α-helix1453-146614
α-helix1467-14693
α-helix1478-14814
α-helix1483-14886
α-helix1497-150711
α-helix1518-152710
α-helix1533-15375
α-helix1547-155711
α-helix1571-158313
α-helix1594-160310
α-helix1606-16127
α-helix1618-162811
α-helix1634-16418
α-helix1644-165815
α-helix1662-167817
α-helix1691-170818
α-helix1716-173318
α-helix1740-174910
α-helix1763-17697
α-helix1772-17743
α-helix1778-179114
α-helix1797-181620
α-helix1834-18429
α-helix1847-18493
α-helix1859-187416
α-helix1883-189210
α-helix1900-191516
α-helix1921-193010
α-helix1936-19383
α-helix1939-195719
α-helix1965-197612
α-helix1983-19875
α-helix2002-201413
α-helix2025-204218
α-helix2091-210616
α-helix2117-212812
α-helix2156-217217
α-helix2184-219512
α-helix2204-221613
α-helix2229-224416
α-helix2252-226615
α-helix2276-228914
α-helix2303-232018
α-helix2329-234113
α-helix2346-236015
α-helix2370-23778
α-helix2378-23814
α-helix2382-23854
α-helix2388-240114
α-helix2418-24236
α-helix2429-244214
α-helix2447-24526
α-helix2453-24575
α-helix2469-24768
α-helix2477-24793
β-strand248014
β-strand248813
α-helix2500-25023
α-helix2519-253315
α-helix2538-254912
α-helix2554-256714
α-helix2568-25703
α-helix2576-258712
α-helix2590-25956
α-helix2602-26109
α-helix2623-26264
α-helix2633-264412
α-helix2655-266814
α-helix2672-268211
α-helix2686-269712
α-helix2700-271516
α-helix2725-273915
α-helix2743-275210
α-helix2773-278311
α-helix2789-280517
α-helix2813-283018
α-helix2835-28362
α-helix2839-286325
α-helix2865-28673
α-helix2874-288512
α-helix2895-291521
α-helix2921-29233
α-helix2943-295614
α-helix2960-29656
α-helix2980-299112
α-helix2999-30068
α-helix3018-303215
α-helix3037-304711
α-helix3054-306815
α-helix3078-309013
α-helix3098-310811
α-helix3116-31227
α-helix3131-31366
α-helix3137-31415
α-helix3152-316211
α-helix3164-317916
α-helix3203-321715
α-helix3220-323617
α-helix3241-325919
α-helix3274-328512
α-helix3293-32964
α-helix3297-32993
α-helix3309-332618
β-strand3331-333225
α-helix3334-33374
α-helix3339-33424
α-helix3344-33474
α-helix33521
β-strand335316
α-helix33541
α-helix3368-33692
β-strand337016
β-strand3371-337445
β-strand3378-338255
β-strand3387-339595
β-strand3400-340675
α-helix3413-342513
α-helix3429-34324
α-helix3434-34385
β-strand3448-345035
β-strand3456-345945
β-strand3464-346637
α-helix3467-347711
α-helix3483-349412
α-helix3506-352015
α-helix3526-35349
α-helix3538-356023
α-helix3561-35633
β-strand356418
β-strand3572-357547
β-strand3581-358337
β-strand358818
α-helix3626-36327
α-helix3635-36362
α-helix3637-36415
α-helix3642-365312
α-helix3659-367719
α-helix3686-370621
α-helix3708-37103
α-helix3719-37268
α-helix3730-37334

Molecules and chains

MoleculeChainsTypeLengthOrganismUniProt
Transcription factor SPT20Bprotein604Saccharomyces cerevisiae S288CP50875 (AlphaFold model)
Transcription initiation factor TFIID subunit 12Iprotein539Saccharomyces cerevisiae S288CQ03761 (AlphaFold model)
Transcription-associated protein 1Tprotein3744Saccharomyces cerevisiae S288CP38811
Sequence of entity 1 (B), FASTA
>6T9J_1 Transcription factor SPT20 (chains B)
MSANSPTGNDPHVFGIPVNATPSNMGSPGSPVNVPPPMNPAVANVNHPVMRTNSNSNANE
GTRTLTREQIQQLQQRQRLLLQQRLLEQQRKQQALQNYEAQFYQMLMTLNKRPKRLYNFV
EDADSILKKYEQYLHSFEFHIYENNYKICAPANSRLQQQQKQPELTSDGLILTKNNETLK
EFLEYVARGRIPDAIMEVLRDCNIQFYEGNLILQVYDHTNTVDVTPKENKPNLNSSSSPS
NNNSTQDNSKIQQPSEPNSGVANTGANTANKKASFKRPRVYRTLLKPNDLTTYYDMMSYA
DNARFSDSIYQQFESEILTLTKRNLSLSVPLNPYEHRDMLEETAFSEPHWDSEKKSFIHE
HRAESTREGTKGVVGHIEERDEFPQHSSNYEQLMLIMNERTTTITNSTFAVSLTKNAMEI
ASSSSNGVRGASSSTSNSASNTRNNSLANGNQVALAAAAAAAAVGSTMGNDNNQFSRLKF
IEQWRINKEKRKQQALSANINPTPFNARISMTAPLTPQQQLLQRQQQALEQQQNGGAMKN
ANKRSGNNATSNNNNNNNNLDKPKVKRPRKNAKKSESGTPAPKKKRMTKKKQSASSTPSS
TTMS
Sequence of entity 2 (I), FASTA
>6T9J_2 Transcription initiation factor TFIID subunit 12 (chains I)
MSSNPENSGVNANNNTGTGNADAITGAQQNMVLQPRQLQEMAAKFRTLLTEARNVGETTP
RGKELMFQAAKIKQVYDALTLNRRRQQAAQAYNNTSNSNSSNPASIPTENVPNSSQQQQQ
QQQQTRNNSNKFSNMIKQVLTPEENQEYEKLWQNFQVRHTSIKEKETYLKQNIDRLEQEI
NKQTDEGPKQQLQEKKIELLNDWKVLKIEYTKLFNNYQNSKKTFYVECARHNPALHKFLQ
ESTQQQRVQQQRVQQQQQQQQQQQQQQQQQQQQQQQRQGQNQRKISSSNSTEIPSVTGPD
ALKSQQQQQNTITATNNPRGNVNTSQTEQSKAKVTNVNATASMLNNISSSKSAIFKQTEP
AIPISENISTKTPAPVAYRSNRPTITGGSAMNASALNTPATTKLPPYEMDTQRVMSKRKL
RELVKTVGIDEGDGETVIDGDVEELLLDLADDFVTNVTAFSCRLAKHRKSDNLEARDIQL
HLERNWNIRIPGYSADEIRSTRKWNPSQNYNQKLQSITSDKVAAAKNNGNNVASLNTKK
Sequence of entity 3 (T), FASTA
>6T9J_3 Transcription-associated protein 1 (chains T)
MSLTEQIEQFASRFRDDDATLQSRYSTLSELYDIMELLNSPEDYHFFLQAVIPLLLNQLK
EVPISYDAHSPEQKLRNSMLDIFNRCLMNQTFQPYAMEVLEFLLSVLPKENEENGILCMK
VLTTLFKSFKSILQDKLDSFIRIIIQIYKNTPNLINQTFYEAGKAEQGDLDSPKEPQADE
LLDEFSKNDEEKDFPSKQSSTEPRFENSTSSNGLRSSMFSFKILSECPITMVTLYSSYKQ
LTSTSLPEFTPLIMNLLNIQIKQQQEAREQAESRGEHFTSISTEIINRPAYCDFILAQIK
ATSFLAYVFIRGYAPEFLQDYVNFVPDLIIRLLQDCPSELSSARKELLHATRHILSTNYK
KLFLPKLDYLFDERILIGNGFTMHETLRPLAYSTVADFIHNIRSELQLSEIEKTIKIYTG
YLLDESLALTVQIMSAKLLLNLVERILKLGKENPQEAPRAKKLLMIIIDSYMNRFKTLNR
QYDTIMKYYGRYETHKKEKAEKLKNSIQDNDKESEEFMRKVLEPSDDDHLMPQPKKEDIN
DSPDVEMTESDKVVKNDVEMFDIKNYAPILLLPTPTNDPIKDAFYLYRTLMSFLKTIIHD
LKVFNPPPNEYTVANPKLWASVSRVFSYEEVIVFKDLFHECIIGLKFFKDHNEKLSPETT
KKHFDISMPSLPVSATKDARELMDYLAFMFMQMDNATFNEIIEQELPFVYERMLEDSGLL
HVAQSFLTSEITSPNFAGILLRFLKGKLKDLGNVDFNTSNVLIRLFKLSFMSVNLFPNIN
EVVLLPHLNDLILNSLKYSTTAEEPLVYFYLIRTLFRSIGGGRFENLYRSIKPILQVLLQ
SLNQMILTARLPHERELYVELCITVPVRLSVLAPYLPFLMKPLVFALQQYPDLVSQGLRT
LELCIDNLTAEYFDPIIEPVIDDVSKALFNLLQPQPFNHAISHNVVRILGKLGGRNRQFL
KPPTDLTEKTELDIDAIADFKINGMPEDVPLSVTPGIQSALNILQSYKSDIHYRKSAYKY
LTCVLLLMTKSSAEFPTNYTELLKTAVNSIKLERIGIEKNFDLEPTVNKRDYSNQENLFL
RLLESVFYATSIKELKDDAMDLLNNLLDHFCLLQVNTTLLNKRNYNGTFNIDLKNPNFML
DSSLILDAIPFALSYYIPEVREVGVLAYKRIYEKSCLIYGEELALSHSFIPELAKQFIHL
CYDETYYNKRGGVLGIKVLIDNVKSSSVFLKKYQYNLANGLLFVLKDTQSEAPSAITDSA
EKLLIDLLSITFADVKEEDLGNKVLENTLTDIVCELSNANPKVRNACQKSLHTISNLTGI
PIVKLMDHSKQFLLSPIFAKPLRALPFTMQIGNVDAITFCLSLPNTFLTFNEELFRLLQE
SIVLADAEDESLSTNIQKTTEYSTSEQLVQLRIACIKLLAIALKNEEFATAQQGNIRIRI
LAVFFKTMLKTSPEIINTTYEALKGSLAENSKLPKELLQNGLKPLLMNLSDHQKLTVPGL
DALSKLLELLIAYFKVEIGRKLLDHLTAWCRVEVLDTLFGQDLAEQMPTKIIVSIINIFH
LLPPQADMFLNDLLLKVMLLERKLRLQLDSPFRTPLARYLNRFHNPVTEYFKKNMTLRQL
VLFMCNIVQRPEAKELAEDFEKELDNFYDFYISNIPKNQVRVVSFFTNMVDLFNTMVITN
GDEWLKKKGNMILKLKDMLNLTLKTIKENSFYIDHLQLNQSIAKFQALYLRFTELSERDQ
NPLLLDFIDFSFSNGIKASYSLKKFIFHNIIASSNKEKQNNFINDATLFVLSDKCLDARI
FVLKNVINSTLIYEVATSGSLKSYLVEDKKPKWLELLHNKIWKNSNAILAYDVLDHHDLF
RFELLQLSAIFIKADPEIIAEIKKDIIKFCWNFIKLEDTLIKQSAYLVTSYFISKFDFPI
KVVTQVFVALLRSSHVEARYLVKQSLDVLTPVLHERMNAAGTPDTWINWVKRVMVENSSS
QNNILYQFLISHPDLFFNSRDLFISNIIHHMNKITFMSNSNSDSHTLAIDLASLILYWEN
KTLEITNVNNTKTDSDGDVVMSDSKSDINPVEADTTAIIVDANNNSPISLHLREACTAFL
IRYVCASNHRAIETELGLRAINILSELISDKHWTNVNVKLVYFEKFLIFQDLDSENILYY
CMNALDVLYVFFKNKTKEWIMENLPTIQNLLEKCIKSDHHDVQEALQKVLQVIMKAIKAQ
GVSVIIEEESPGKTFIQMLTSVITQDLQETSSVTAGVTLAWVLFMNFPDNIVPLLTPLMK
TFSKLCKDHLSISQPKDAMALEEARITTKLLEKVLYILSLKVSLLGDSRRPFLSTVALLI
DHSMDQNFLRKIVNMSRSWIFNTEIFPTVKEKAAILTKMLAFEIRGEPSLSKLFYEIVLK
LFDQEHFNNTEITVRMEQPFLVGTRVEDIGIRKRFMTILDNSLERDIKERLYYVIRDQNW
EFIADYPWLNQALQLLYGSFNREKELSLKNIYCLSPPSILQEYLPENAEMVTEVNDLELS
NFVKGHIASMQGLCRIISSDFIDSLIEIFYQDPKAIHRAWVTLFPQVYKSIPKNEKYGFV
RSIITLLSKPYHTRQISSRTNVINMLLDSISKIESLELPPHLVKYLAISYNAWYQSINIL
ESIQSNTSIDNTKIIEANEDALLELYVNLQEEDMFYGLWRRRAKYTETNIGLSYEQIGLW
DKAQQLYEVAQVKARSGALPYSQSEYALWEDNWIQCAEKLQHWDVLTELAKHEGFTDLLL
ECGWRVADWNSDRDALEQSVKSVMDVPTPRRQMFKTFLALQNFAESRKGDQEVRKLCDEG
IQLSLIKWVSLPIRYTPAHKWLLHGFQQYMEFLEATQIYANLHTTTVQNLDSKAQEIKRI
LQAWRDRLPNTWDDVNMWNDLVTWRQHAFQVINNAYLPLIPALQQSNSNSNINTHAYRGY
HEIAWVINRFAHVARKHNMPDVCISQLARIYTLPNIEIQEAFLKLREQAKCHYQNMNELT
TGLDVISNTNLVYFGTVQKAEFFTLKGMFLSKLRAYEEANQAFATAVQIDLNLAKAWAQW
GFFNDRRLSEEPNNISFASNAISCYLQAAGLYKNSKIRELLCRILWLISIDDASGMLTNA
FDSFRGEIPVWYWITFIPQLLTSLSHKEANMVRHILIRIAKSYPQALHFQLRTTKEDFAV
IQRQTMAVMGDKPDTNDRNGRRQPWEYLQELNNILKTAYPLLALSLESLVAQINDRFKST
TDEDLFRLINVLLIDGTLNYNRLPFPRKNPKLPENTEKNLVKFSTTLLAPYIRPKFNADF
IDNKPDYETYIKRLRYWRRRLENKLDRASKKENLEVLCPHLSNFHHQKFEDIEIPGQYLL
NKDNNVHFIKIARFLPTVDFVRGTHSSYRRLMIRGHDGSVHSFAVQYPAVRHSRREERMF
QLYRLFNKSLSKNVETRRRSIQFNLPIAIPLSPQVRIMNDSVSFTTLHEIHNEFCKKKGF
DPDDIQDFMADKLNAAHDDALPAPDMTILKVEIFNSIQTMFVPSNVLKDHFTSLFTQFED
FWLFRKQFASQYSSFVFMSYMMMINNRTPHKIHVDKTSGNVFTLEMLPSRFPYERVKPLL
KNHDLSLPPDSPIFHNNEPVPFRLTPNIQSLIGDSALEGIFAVNLFTISRALIEPDNELN
TYLALFIRDEIISWFSNLHRPIIENPQLREMVQTNVDLIIRKVAQLGHLNSTPTVTTQFI
LDCIGSAVSPRNLARTDVNFMPWF

Primary citation

Structure of the transcription coactivator SAGA. Wang, H., Dienemann, C., Stutzer, A. et al. Nature (2020) 577:717-720. DOI 10.1038/s41586-020-1933-5 · PubMed

Other PDB entries of the same protein (UniProt P50875 (AlphaFold model), which also has an AlphaFold model), best resolution first:

Browse structure collections

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