6UXW: SWI/SNF nucleosome complex with ADP-BeFx
SWI/SNF nucleosome complex with ADP-BeFx. Determined by electron microscopy at 8.96 Å resolution. Released 18 Mar 2020.
- Method
- Electron microscopy
- Resolution
- 8.96 Å
- Organisms
- Xenopus laevis, synthetic construct, Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
- Chains
- 28
- Atoms
- 41,275
- Mol. weight
- 1289.69 kDa
- Ligands
- MG, BEF, ADP, PO4
- Released
- 18 Mar 2020
Explore 6UXW in 3D
Show helices and sheets
RCSB PDB
PDBe
Secondary structure: helices and β-sheets
6UXW contains 213 α-helices and 99 β-strands across 26 chains. Residue ranges use author residue numbering, as in the PDB file, from PDBe. To see them in 3D, choose the Cartoon representation with Secondary structure coloring: helices, sheets and coils get different colors.
Chain A: 37 helices, 16 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 491-517 | 27 | |
| α-helix | 526-556 | 31 | |
| α-helix | 576-657 | 82 | |
| α-helix | 673-688 | 16 | |
| α-helix | 744-747 | 4 | |
| α-helix | 758-759 | 2 | |
| α-helix | 770-783 | 14 | |
| β-strand | 789-790 | 2 | 23 |
| α-helix | 798-812 | 15 | |
| β-strand | 819-822 | 4 | 23 |
| α-helix | 829-834 | 6 | |
| β-strand | 845 | 1 | 23 |
| α-helix | 851-860 | 10 | |
| α-helix | 861-863 | 3 | |
| β-strand | 868-871 | 4 | 23 |
| α-helix | 875-878 | 4 | |
| α-helix | 880-883 | 4 | |
| β-strand | 888-890 | 3 | 24 |
| β-strand | 891-894 | 4 | 23 |
| α-helix | 896-899 | 4 | |
| α-helix | 905-910 | 6 | |
| β-strand | 916-918 | 3 | 24 |
| β-strand | 921-922 | 2 | 23 |
| α-helix | 934-941 | 8 | |
| α-helix | 951-953 | 3 | |
| α-helix | 968-971 | 4 | |
| α-helix | 972-979 | 8 | |
| α-helix | 980-987 | 8 | |
| α-helix | 996-999 | 4 | |
| β-strand | 1013 | 1 | 25 |
| α-helix | 1017-1029 | 13 | |
| α-helix | 1050-1060 | 11 | |
| α-helix | 1066-1072 | 7 | |
| α-helix | 1080-1082 | 3 | |
| α-helix | 1088-1102 | 15 | |
| β-strand | 1106-1110 | 5 | 26 |
| α-helix | 1114-1125 | 12 | |
| β-strand | 1131 | 1 | 27 |
| α-helix | 1140-1149 | 10 | |
| β-strand | 1159 | 1 | 27 |
| β-strand | 1160-1162 | 3 | 26 |
| α-helix | 1163-1166 | 4 | |
| β-strand | 1177-1180 | 4 | 26 |
| α-helix | 1187-1194 | 8 | |
| β-strand | 1207-1210 | 4 | 26 |
| β-strand | 1213 | 1 | 25 |
| α-helix | 1218-1231 | 14 | |
| α-helix | 1232-1234 | 3 | |
| α-helix | 1248-1268 | 21 | |
| α-helix | 1280-1288 | 9 | |
| α-helix | 1291-1296 | 6 | |
| α-helix | 1297-1300 | 4 | |
| α-helix | 1338-1346 | 9 | |
Chain B: 24 helices, 4 β-strands
| Element | Residues | Length | Sheet |
|---|
| β-strand | 706 | 1 | 28 |
| α-helix | 710-714 | 5 | |
| α-helix | 718-733 | 16 | |
| α-helix | 747-764 | 18 | |
| β-strand | 780 | 1 | 29 |
| α-helix | 793-804 | 12 | |
| α-helix | 866-867 | 2 | |
| α-helix | 886-894 | 9 | |
| α-helix | 910-928 | 19 | |
| α-helix | 934-937 | 4 | |
| α-helix | 942-956 | 15 | |
| α-helix | 965-980 | 16 | |
| α-helix | 990-1002 | 13 | |
| β-strand | 1006-1007 | 2 | 30 |
| β-strand | 1025-1026 | 2 | 30 |
| α-helix | 1027-1028 | 2 | |
| α-helix | 1035-1045 | 11 | |
| α-helix | 1054-1060 | 7 | |
| α-helix | 1080-1089 | 10 | |
| α-helix | 1090-1092 | 3 | |
| α-helix | 1106-1113 | 8 | |
| α-helix | 1128-1136 | 9 | |
| α-helix | 1138-1148 | 11 | |
| α-helix | 1204-1215 | 12 | |
| α-helix | 1233-1258 | 26 | |
| α-helix | 1264-1269 | 6 | |
| α-helix | 1279-1285 | 7 | |
| α-helix | 1293-1313 | 21 | |
Chain C: 7 helices, 8 β-strands
| Element | Residues | Length | Sheet |
|---|
| β-strand | 427 | 1 | 28 |
| α-helix | 443-449 | 7 | |
| β-strand | 458-461 | 4 | 31 |
| β-strand | 467 | 1 | 32 |
| β-strand | 469 | 1 | 32 |
| β-strand | 476-479 | 4 | 31 |
| α-helix | 488-498 | 11 | |
| α-helix | 511-521 | 11 | |
| α-helix | 529-532 | 4 | |
| β-strand | 543-552 | 10 | 33 |
| β-strand | 555-564 | 10 | 33 |
| α-helix | 572-579 | 8 | |
| α-helix | 588-609 | 22 | |
| α-helix | 646-648 | 3 | |
| β-strand | 654-655 | 2 | 33 |
Chain D: 9 helices, 1 β-strand
| Element | Residues | Length | Sheet |
|---|
| α-helix | 309-311 | 3 | |
| α-helix | 321-326 | 6 | |
| α-helix | 328-331 | 4 | |
| α-helix | 340-356 | 17 | |
| α-helix | 365-371 | 7 | |
| α-helix | 375-387 | 13 | |
| β-strand | 411-412 | 2 | 34 |
| α-helix | 424-426 | 3 | |
| α-helix | 437-441 | 5 | |
| α-helix | 450-460 | 11 | |
Chain E: 7 helices, 3 β-strands
| Element | Residues | Length | Sheet |
|---|
| β-strand | 306-307 | 2 | 34 |
| α-helix | 309-311 | 3 | |
| β-strand | 315 | 1 | 29 |
| β-strand | 318 | 1 | 29 |
| α-helix | 321-326 | 6 | |
| α-helix | 328-330 | 3 | |
| α-helix | 340-356 | 17 | |
| α-helix | 364-370 | 7 | |
| α-helix | 376-387 | 12 | |
| α-helix | 430-433 | 4 | |
Chain F: 9 helices, 0 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 529-541 | 13 | |
| α-helix | 546-551 | 6 | |
| α-helix | 558-565 | 8 | |
| α-helix | 612-623 | 12 | |
| α-helix | 637-646 | 10 | |
| α-helix | 652-702 | 51 | |
| α-helix | 703-707 | 5 | |
| α-helix | 708-748 | 41 | |
| α-helix | 767-779 | 13 | |
Chain G: 7 helices, 0 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 529-540 | 12 | |
| α-helix | 546-551 | 6 | |
| α-helix | 558-566 | 9 | |
| α-helix | 626-629 | 4 | |
| α-helix | 635-654 | 20 | |
| α-helix | 681-746 | 66 | |
| α-helix | 764-778 | 15 | |
Chain H: 12 helices, 3 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 83-113 | 31 | |
| α-helix | 114-116 | 3 | |
| α-helix | 312-317 | 6 | |
| α-helix | 325-339 | 15 | |
| β-strand | 342 | 1 | 35 |
| β-strand | 378-380 | 3 | 35 |
| α-helix | 383-386 | 4 | |
| α-helix | 394-396 | 3 | |
| β-strand | 400-402 | 3 | 35 |
| α-helix | 403-409 | 7 | |
| α-helix | 451-455 | 5 | |
| α-helix | 460-509 | 50 | |
| α-helix | 511-528 | 18 | |
| α-helix | 541-546 | 6 | |
| α-helix | 550-561 | 12 | |
14 more chain groups are not listed. Open the entry in the viewer and use the sequence panel to see them.
Molecules and chains
| Molecule | Chains | Type | Length | Organism | UniProt |
|---|
| Histone H3.2 | R, V | protein | 135 | Xenopus laevis | P84233 (AlphaFold model) |
| Histone H4 | S, W | protein | 102 | Xenopus laevis | P62799 (AlphaFold model) |
| Histone H2A type 1 | T, X | protein | 129 | Xenopus laevis | P06897 (AlphaFold model) |
| Histone H2B 1.1 | U, Y | protein | 122 | Xenopus laevis | P02281 (AlphaFold model) |
| 601 sequence bottom strand | a | DNA | 185 | synthetic construct | |
| 601 sequence top strand | b | DNA | 200 | synthetic construct | |
| Actin-related protein 7 | P | protein | 477 | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) | Q12406 |
| Actin-like protein ARP9 | Q | protein | 467 | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) | Q05123 |
| Regulator of Ty1 transposition protein 102 | Z | protein | 157 | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) | P53330 |
| Transcription regulatory protein SNF2 | A | protein | 1703 | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) | P22082 |
| SWI/SNF chromatin-remodeling complex subunit SWI1 | B | protein | 1314 | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) | P09547 |
| SWI/SNF chromatin-remodeling complex subunit SNF5 | C | protein | 905 | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) | P18480 |
5 more molecules are not listed.
Sequence of entity 1 (R, V), FASTA
>6UXW_1 Histone H3.2 (chains R, V)
ARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTEL
LIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIM
PKDIQLARRIRGERA
Sequence of entity 2 (S, W), FASTA
>6UXW_2 Histone H4 (chains S, W)
SGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKV
FLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG
Sequence of entity 3 (T, X), FASTA
>6UXW_3 Histone H2A type 1 (chains T, X)
SGRGKQGGKTRAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTA
EILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGRVTIAQGGVLPNIQSVLLPKKT
ESSKSAKSK
Sequence of entity 4 (U, Y), FASTA
>6UXW_4 Histone H2B 1.1 (chains U, Y)
AKSAPAPKKGSKKAVTKTQKKDGKKRRKTRKESYAIYVYKVLKQVHPDTGISSKAMSIMN
SFVNDVFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTS
AK
Sequence of entity 5 (a), FASTA
>6UXW_5 601 sequence bottom strand (chains a)
ATCAGAATCCCGGTGCCGAGGCCGCTCAATTGGTCGTAGACAGCTCTAGCACCGCTTAAA
CGCACGTACGCGCTGTCCCCCGCGTTTTAACCGCCAAGGGGATTACTCCCTAGTCTCCAG
GCACGTGTCAGATATATACATCGATTAACGATGCTGGGCATAAGCGTGGTTCAATACCGG
CGCAT
Sequence of entity 6 (b), FASTA
>6UXW_6 601 sequence top strand (chains b)
ACCTCCCACTATTTTATGCGCCGGTATTGAACCACGCTTATGCCCAGCATCGTTAATCGA
TGTATATATCTGACACGTGCCTGGAGACTAGGGAGTAATCCCCTTGGCGGTTAAAACGCG
GGGGACAGCGCGTACGTGCGTTTAAGCGGTGCTAGAGCTGTCTACGACCAATTGAGCGGC
CTCGGCACCGGGATTCTGAT
Sequence of entity 7 (P), FASTA
>6UXW_7 Actin-related protein 7 (chains P)
MTLNRKCVVIHNGSHRTVAGFSNVELPQCIIPSSYIKRTDEGGEAEFIFGTYNMIDAAAE
KRNGDEVYTLVDSQGLPYNWDALEMQWRYLYDTQLKVSPEELPLVITMPATNGKPDMAIL
ERYYELAFDKLNVPVFQIVIEPLAIALSMGKSSAFVIDIGASGCNVTPIIDGIVVKNAVV
RSKFGGDFLDFQVHERLAPLIKEENDMENMADEQKRSTDVWYEASTWIQQFKSTMLQVSE
KDLFELERYYKEQADIYAKQQEQLKQMDQQLQYTALTGSPNNPLVQKKNFLFKPLNKTLT
LDLKECYQFAEYLFKPQLISDKFSPEDGLGPLMAKSVKKAGASINSMKANTSTNPNGLGT
SHINTNVGDNNSTASSSNISPEQVYSLLLTNVIITGSTSLIEGMEQRIIKELSIRFPQYK
LTTFANQVMMDRKIQGWLGALTMANLPSWSLGKWYSKEDYETLKRDRKQSQATNATN
Sequence of entity 8 (Q), FASTA
>6UXW_8 Actin-like protein ARP9 (chains Q)
MAPFRQDSILIIYPRSQTTLVQFGLNEETFTVPELEIPTQIYRTTRQDGSYTYHSTNKDN
KAELIKPIQNGEIIDISAFTQFLRLIFVSILSDRANKNQDAFEAELSNIPLLLITHHSWS
QSDLEIITQYVFESLEINNLIQLPASLAATYSMISLQNCCIIDVGTHHTDIIPIVDYAQL
DHLVSSIPMGGQSINDSLKKLLPQWDDDQIESLKKSPIFEVLSDDAKKLSSFDFGNENED
EDEGTLNVAEIITSGRDTREVLEERERGQKVKNVKNSDLEFNTFWDEKGNEIKVGKQRFQ
GCNNLIKNISNRVGLTLDNIDDINKAKAVWENIIIVGGTTSISGFKEALLGQLLKDHLII
EPEEEKSKREEEAKSVLPAATKKKSKFMTNSTAFVPTIEYVQCPTVIKLAKYPDYFPEWK
KSGYSEIIFLGAQIVSKQIFTHPKDTFYITREKYNMKGPAALWDVQF
Sequence of entity 9 (Z), FASTA
>6UXW_9 Regulator of Ty1 transposition protein 102 (chains Z)
MDPQTLITKANKVSYYGNPTSKESWRYDWYQPSKVSSNVQQPQQQLGDMENNLEKYPFRY
KTWLRNQEDEKNLQRESCEDILDLKEFDRRILKKSLMTSHTKGDTSKATGAPSANQGDEA
LSVDDIRGAVGNSEAIPGLSAGVNNDNTKESKDVKMN
Sequence of entity 10 (A), FASTA
>6UXW_10 Transcription regulatory protein SNF2 (chains A)
MNIPQRQFSNEEVNRCYLRWQHLRNEHGMNAPSVPEFIYLTKVLQFAAKQRQELQMQRQQ
QGISGSQQNIVPNSSDQAELPNNASSHISASASPHLAPNMQLNGNETFSTSAHQSPIMQT
QMPLNSNGGNNMLPQRQSSVGSLNATNFSPTPANNGENAAEKPDNSNHNNLNLNNSELQP
QNRSLQEHNIQDSNVMPGSQINSPMPQQAQMQQAQFQAQQAQQAQQAQQAQQAQARLQQG
RRLPMTMFTAEQSELLKAQITSLKCLVNRKPIPFEFQAVIQKSINHPPDFKRMLLSLSEF
ARRRQPTDQNNQSNLNGGNNTQQPGTNSHYNNTNTDNVSGLTRNAPLDSKDENFASVSPA
GPSSVHNAKNGTLDKNSQTVSGTPITQTESKKEENETISNVAKTAPNSNKTHTEQNNPPK
PQKPVPLNVLQDQYKEGIKVVDIDDPDMMVDSFTMPNISHSNIDYQTLLANSDHAKFTIE
PGVLPVGIDTHTATDIYQTLIALNLDTTVNDCLDKLLNDECTESTRENALYDYYALQLLP
LQKAVRGHVLQFEWHQNSLLTNTHPNFLSKIRNINVQDALLTNQLYKNHELLKLERKKTE
AVARLKSMNKSAINQYNRRQDKKNKRLKFGHRLIATHTNLERDEQKRAEKKAKERLQALK
ANDEEAYIKLLDQTKDTRITHLLRQTNAFLDSLTRAVKDQQKYTKEMIDSHIKEASEEVD
DLSMVPKMKDEEYDDDDDNSNVDYYNVAHRIKEDIKKQPSILVGGTLKDYQIKGLQWMVS
LFNNHLNGILADEMGLGKTIQTISLLTYLYEMKNIRGPYLVIVPLSTLSNWSSEFAKWAP
TLRTISFKGSPNERKAKQAKIRAGEFDVVLTTFEYIIKERALLSKVKWVHMIIDEGHRMK
NAQSKLSLTLNTHYHADYRLILTGTPLQNNLPELWALLNFVLPKIFNSVKSFDEWFNTPF
ANTGGQDKIELSEEETLLVIRRLHKVLRPFLLRRLKKDVEKELPDKVEKVVKCKMSALQQ
IMYQQMLKYRRLFIGDQNNKKMVGLRGFNNQIMQLKKICNHPFVFEEVEDQINPTRETND
DIWRVAGKFELLDRILPKLKATGHRVLIFFQMTQIMDIMEDFLRYINIKYLRLDGHTKSD
ERSELLRLFNAPDSEYLCFILSTRAGGLGLNLQTADTVIIFDTDWNPHQDLQAQDRAHRI
GQKNEVRILRLITTNSVEEVILERAYKKLDIDGKVIQAGKFDNKSTSEEQEALLRSLLDA
EEERRKKRESGVEEEEELKDSEINEILARNDEEMAVLTRMDEDRSKKEEELGVKSRLLEK
SELPDIYSRDIGAELKREESESAAVYNGRGARERKTATYNDNMSEEQWLRQFEVSDDEKN
DKQARKQRTKKEDKSEAIDGNGEIKGENIDADNDGPRINNISAEDRADTDLAMNDDDFLS
KKRKAGRPRGRPKKVKLEGSENSEPPALESSPVTGDNSPSEDFMDIPKPRTAGKTSVKSA
RTSTRGRGRGRGRGRGRGRGRGRPPKARNGLDYVRTPAAATSPIDIREKVAKQALDLYHF
ALNYENEAGRKLSDIFLSKPSKALYPDYYMIIKYPVAFDNINTHIETLAYNSLKETLQDF
HLIFSNARIYNTEGSVVYEDSLELEKVVTKKYCEIMGDNSQLDFTEFDEQYGTRPLVLPP
VVTSSVAESFTDEADSSMTEASV
Sequence of entity 11 (B), FASTA
>6UXW_11 SWI/SNF chromatin-remodeling complex subunit SWI1 (chains B)
MDFFNLNNNNNNNNTTTTTTTTNNNNTNNNNTNNNNNPANNTNNNNSTGHSSNTNNNTNN
NNTNTGASGVDDFQNFFDPKPFDQNLDSNNNNSNSNNNDNNNSNTVASSTNFTSPTAVVN
NAAPANVTGGKAANFIQNQSPQFNSPYDSNNSNTNLNSLSPQAILAKNSIIDSSNLPLQA
QQQLYGGNNNNNSTGIANDNVITPHFITNVQSISQNSSSSTPNTNSNSTPNANQQFLPFN
NSASNNGNLTSNQLISNYAASNSMDRSSSASNEFVPNTSDNNNNSNNHNMRNNSNNKTSN
NNNVTAVPAATPANTNNSTSNANTVFSERAAMFAALQQKQQQRFQALQQQQQQQQNQQQQ
NQQPQQQQQQQQNPKFLQSQRQQQQRSILQSLNPALQEKISTELNNKQYELFMKSLIENC
KKRNMPLQSIPEIGNRKINLFYLYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESI
YFRILLPYERHMISQEGIKETQAKRIFLQQFLQELLKKVQQQQQAAALANANNNINSASS
APTPAAPGASVPATAAPGTEAGIVPVSANTPKSLNSNININVNNNNIGQQQVKKPRKQRV
KKKTKKELELERKEREDFQKRQQKLLEDQQRQQKLLLETKLRQQYEIELKKLPKVYKRSI
VRNYKPLINRLKHYNGYDINYISKIGEKIDSNKPIFLFAPELGAINLHALSMSLQSKNLG
EINTALNTLLVTSADSNLKISLVKYPELLDSLAILGMNLLSNLSQNVVPYHRNTSDYYYE
DAGSNQYYVTQHDKMVDKIFEKVNNNATLTPNDSNDEKVTILVDSLTGNQLPTPTPTEME
PDLDTECFISMQSTSPAVKQWDLLPEPIRFLPNQFPLKIHRTPYLTSLKKIKDEIDDPFT
KINTRGAEDPKVLINDQLSTISMILRNISFSDNNSRIMSRNFYLKRFISDLLWLVLIHPE
NFTCNRKILNFKKDLVIVLSNISHLLEIASSIDCLLILILVISFGQPKLNPMASSSSFGS
ESLTFNEFQLQWGKYQTFGVDILAKLFSLEKPNLNYFKSILLNKNTGNNLYDRNSNNNHK
DKKLLRRLLNLYNDNNKNNNNRHNLLNDVVSFLFSAIPLQQVLSQSADPSLLIDQFSPVI
SQSLTSILVIVQKILPLSNEVFEISENNSDSNSNNNGNKDSSFNFNKNLPFVWLSSEENI
GSGLLKLSEIILNINNSTSKNTLLQQQNYSKVLLPSINISCVQLIKCLVEKSICFENCLN
NDPEILKKIASIPNLFPTDLEIFQLFTNPSVDIQIINQYQLLYNLKNDILTNLE
Sequence of entity 12 (C), FASTA
>6UXW_12 SWI/SNF chromatin-remodeling complex subunit SNF5 (chains C)
MNNQPQGTNSVPNSIGNIFSNIGTPSFNMAQIPQQLYQSLTPQQLQMIQQRHQQLLRSRL
QQQQQQQQQTSPPPQTHQSPPPPPQQSQPIANQSATSTPPPPPAPHNLHPQIGQVPLAPA
PINLPPQIAQLPLATQQQVLNKLRQQAIAKNNPQVVNAITVAQQQVQRQIEQQKGQQTAQ
TQLEQQRQLLVQQQQQQQLRNQIQRQQQQQFRHHVQIQQQQQKQQQQQQQHQQQQQQQQQ
QQQQQQQQQQQQQQQQQQQQQQQQQQQQGQIPQSQQVPQVRSMSGQPPTNVQPTIGQLPQ
LPKLNLPKYQTIQYDPPETKLPYPTYWSDKKADTDTLLYEQIIQRDKINKYSLIRETNGY
DPFSIYGFSNKEYISRLWHTLKYYQDLKNTRMKSITSTSQKIPSASIWGNGYSGYGNGIT
NTTTRVIPQVEVGNRKHYLEDKLKVYKQAMNETSEQLVPIRLEFDQDRDRFFLRDTLLWN
KNDKLIKIEDFVDDMLRDYRFEDATREQHIDTICQSIQEQIQEFQGNPYIELNQDRLGGD
DLRIRIKLDIVVGQNQLIDQFEWDISNSDNCPEEFAESMCQELELPGEFVTAIAHSIREQ
VHMYHKSLALLGYNFDGSAIEDDDIRSRMLPTITLDDVYRPAAESKIFTPNLLQISAAEL
ERLDKDKDRDTRRKRRQGRSNRRGMLALSGTSASNTSMNGVHNTVAAGNASSLPPGEILL
PDIADIPRTFRTPVPSTLMPGGVDVGPSVESYELRNTTTYKSRPDRPKPVSPPCYIIDHI
PGHSLLLSIKLPGKVNTKEEFAAAPNDTSSGTNAMLPSPESLKTKLNSNIRAGVTIPSIP
NPIANHTVTNSPNPTLQPVIPGGAASKSVPTPSLPIAPPVAPHDSEATLLTNSNNGSSNN
NTQNT
Ligands and cofactors
| ID | Name | Formula | Copies |
|---|
| MG | Magnesium ion | Mg | 1 |
| BEF | Beryllium trifluoride ion | Be F3 | 1 |
| ADP | Adenosine-5'-diphosphate | C10 H15 N5 O10 P2 | 1 |
| PO4 | Phosphate ion | O4 P | 12 |
Primary citation
Cryo-EM structure of SWI/SNF complex bound to a nucleosome. Han, Y., Reyes, A.A., Malik, S. et al. Nature (2020) 579:452-455. DOI 10.1038/s41586-020-2087-1 · PubMed
Other PDB entries of the same protein (UniProt P84233 (AlphaFold model), which also has an AlphaFold model), best resolution first:
- 2HUE 1.7 Å, Structure of the H3-H4 chaperone Asf1 bound to histones H3 and H4
- 3GV6 1.76 Å, Crystal Structure of human chromobox homolog 6 (CBX6) with H3K9 peptide
- 1KX5 1.94 Å, X-Ray Structure of the Nucleosome Core Particle, NCP147, at 1.9 A Resolution
- 1KX3 2.0 Å, X-Ray Structure of the Nucleosome Core Particle, NCP146, at 2.0 A Resolution
- 4QEO 2.0 Å, crystal structure of KRYPTONITE in complex with mCHH DNA, H3(1-15) peptide and SAH
- 1S32 2.05 Å, Molecular Recognition of the Nucleosomal 'Supergroove'
- 3UTA 2.07 Å, Crystal Structure of Nucleosome Core Particle Assembled with an Alpha-Satellite Sequence…
- 3C1B 2.2 Å, The effect of H3 K79 dimethylation and H4 K20 trimethylation on nucleosome and chromatin…
- 3UT9 2.2 Å, Crystal Structure of Nucleosome Core Particle Assembled with a Palindromic Widom '601'…
- 3UTB 2.2 Å, Crystal Structure of Nucleosome Core Particle Assembled with the 146b Alpha-Satellite…
- 6WZ5 2.2 Å, Bridging of double-strand DNA break activates PARP2/HPF1 to modify chromatin
- 8RUQ 2.29 Å, Borealin N-terminus in complex with H3.T3p-nucleosome
Browse structure collections
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