7ABH: Human pre-Bact-2 spliceosome
Human pre-Bact-2 spliceosome (SF3b/U2 snRNP portion). Determined by electron microscopy at 4.5 Å resolution. Released 9 Dec 2020.
- Method
- Electron microscopy
- Resolution
- 4.5 Å
- Organisms
- Homo sapiens, synthetic construct
- Chains
- 16
- Atoms
- 17,922
- Mol. weight
- 1029.67 kDa
- Released
- 9 Dec 2020
Explore 7ABH in 3D
Show helices and sheets
RCSB PDB
PDBe
Secondary structure: helices and β-sheets
7ABH contains 139 α-helices and 150 β-strands across 14 chains. Residue ranges use author residue numbering, as in the PDB file, from PDBe. To see them in 3D, choose the Cartoon representation with Secondary structure coloring: helices, sheets and coils get different colors.
Chain 0: 2 helices, 12 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 231-236 | 6 | |
| β-strand | 238 | 1 | 42 |
| β-strand | 243 | 1 | 42 |
| α-helix | 247-249 | 3 | |
| β-strand | 261 | 1 | 43 |
| β-strand | 264 | 1 | 44 |
| β-strand | 273 | 1 | 43 |
| β-strand | 283 | 1 | 45 |
| β-strand | 292 | 1 | 45 |
| β-strand | 304 | 1 | 46 |
| β-strand | 307-314 | 8 | 47 |
| β-strand | 320-327 | 8 | 47 |
| β-strand | 330 | 1 | 46 |
| β-strand | 368 | 1 | 44 |
Chain 1: 5 helices, 4 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 5-19 | 15 | |
| α-helix | 24-26 | 3 | |
| β-strand | 37-41 | 5 | 48 |
| α-helix | 49-56 | 8 | |
| α-helix | 57-59 | 3 | |
| β-strand | 62-67 | 6 | 48 |
| β-strand | 80-84 | 5 | 48 |
| α-helix | 87-96 | 10 | |
| β-strand | 108-111 | 4 | 48 |
Chain 4: 5 helices, 2 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 394-399 | 6 | |
| β-strand | 406-408 | 3 | 8 |
| β-strand | 414-416 | 3 | 8 |
| α-helix | 419-426 | 8 | |
| α-helix | 429-438 | 10 | |
| α-helix | 452-461 | 10 | |
| α-helix | 489-497 | 9 | |
Chain 7: 1 helix, 0 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 148-178 | 31 | |
Chain E: 20 helices, 99 β-strands
| Element | Residues | Length | Sheet |
|---|
| β-strand | 3-9 | 7 | 12 |
| β-strand | 16-20 | 5 | 13 |
| β-strand | 29-33 | 5 | 13 |
| β-strand | 37-41 | 5 | 13 |
| β-strand | 52-57 | 6 | 13 |
| β-strand | 62-68 | 7 | 14 |
| β-strand | 77-82 | 6 | 14 |
| β-strand | 86-91 | 6 | 14 |
| β-strand | 100-106 | 7 | 14 |
| β-strand | 120-123 | 4 | 15 |
| β-strand | 129-133 | 5 | 15 |
| β-strand | 136 | 1 | 16 |
| β-strand | 139-143 | 5 | 15 |
| β-strand | 144-145 | 2 | 17 |
| β-strand | 153-154 | 2 | 17 |
| α-helix | 156-157 | 2 | |
| β-strand | 158-159 | 2 | 15 |
| β-strand | 165-172 | 8 | 16 |
| α-helix | 173-174 | 2 | |
| β-strand | 181-188 | 8 | 16 |
| α-helix | 192-194 | 3 | |
| β-strand | 207-214 | 8 | 16 |
| β-strand | 219-227 | 9 | 16 |
| β-strand | 232-238 | 7 | 18 |
| α-helix | 239 | 1 | |
| β-strand | 247-252 | 6 | 18 |
| β-strand | 255-258 | 4 | 18 |
| α-helix | 264-266 | 3 | |
| β-strand | 267-269 | 3 | 18 |
| β-strand | 273-274 | 2 | 19 |
| β-strand | 289-294 | 6 | 20 |
| β-strand | 299-304 | 6 | 20 |
| β-strand | 309-317 | 9 | 20 |
| β-strand | 322-332 | 11 | 20 |
| β-strand | 336-342 | 7 | 21 |
| β-strand | 346-351 | 6 | 21 |
| β-strand | 357-361 | 5 | 21 |
| β-strand | 372-374 | 3 | 20 |
| β-strand | 386-387 | 2 | 19 |
| β-strand | 395-399 | 5 | 21 |
| β-strand | 407-413 | 7 | 22 |
| β-strand | 422-427 | 6 | 22 |
| α-helix | 430-432 | 3 | |
| β-strand | 434-438 | 5 | 22 |
| β-strand | 439 | 1 | 23 |
| β-strand | 442 | 1 | 24 |
| β-strand | 445-450 | 6 | 25 |
| β-strand | 458-463 | 6 | 26 |
| β-strand | 471-477 | 7 | 26 |
| β-strand | 482-486 | 5 | 26 |
| β-strand | 493-494 | 2 | 26 |
| β-strand | 507-510 | 4 | 27 |
| β-strand | 516-520 | 5 | 27 |
| β-strand | 523-527 | 5 | 27 |
| β-strand | 533-537 | 5 | 27 |
| β-strand | 544-549 | 6 | 28 |
| β-strand | 553-558 | 6 | 28 |
| α-helix | 559-561 | 3 | |
| β-strand | 562 | 1 | 29 |
| β-strand | 563-568 | 6 | 28 |
| β-strand | 574-576 | 3 | 28 |
| α-helix | 577 | 1 | |
| α-helix | 581 | 1 | |
| β-strand | 582 | 1 | 29 |
| α-helix | 583 | 1 | |
| β-strand | 587-592 | 6 | 30 |
| α-helix | 593-595 | 3 | |
| β-strand | 604-609 | 6 | 30 |
| β-strand | 613-618 | 6 | 30 |
| β-strand | 626-632 | 7 | 30 |
| β-strand | 637-644 | 8 | 31 |
| β-strand | 663-669 | 7 | 31 |
| β-strand | 674-678 | 5 | 31 |
| β-strand | 687-689 | 3 | 31 |
| β-strand | 700-706 | 7 | 32 |
| β-strand | 709-715 | 7 | 32 |
| β-strand | 721-724 | 4 | 32 |
| β-strand | 729-732 | 4 | 32 |
| β-strand | 734 | 1 | 24 |
| β-strand | 741-745 | 5 | 25 |
| β-strand | 753-758 | 6 | 25 |
| β-strand | 761-766 | 6 | 25 |
| β-strand | 775 | 1 | 23 |
| α-helix | 784 | 1 | |
| β-strand | 785-790 | 6 | 33 |
| β-strand | 797-804 | 8 | 33 |
| α-helix | 809-824 | 16 | |
| α-helix | 839-844 | 6 | |
| β-strand | 862-869 | 8 | 33 |
| β-strand | 876-881 | 6 | 33 |
| β-strand | 886-895 | 10 | 34 |
| β-strand | 903-911 | 9 | 34 |
| β-strand | 922-928 | 7 | 34 |
| β-strand | 942-945 | 4 | 34 |
| β-strand | 949-955 | 7 | 35 |
| β-strand | 958-963 | 6 | 35 |
| β-strand | 966-971 | 6 | 35 |
| β-strand | 978-983 | 6 | 35 |
| β-strand | 990-995 | 6 | 36 |
| β-strand | 999-1004 | 6 | 36 |
| β-strand | 1009-1015 | 7 | 36 |
| β-strand | 1020-1023 | 4 | 36 |
| β-strand | 1026 | 1 | 37 |
| β-strand | 1036-1038 | 3 | 38 |
| β-strand | 1043-1047 | 5 | 38 |
| β-strand | 1052-1057 | 6 | 38 |
| β-strand | 1088 | 1 | 37 |
| β-strand | 1090-1096 | 7 | 38 |
| β-strand | 1104 | 1 | 12 |
| β-strand | 1117-1119 | 3 | 12 |
| β-strand | 1126-1131 | 6 | 12 |
| α-helix | 1135-1151 | 17 | |
| α-helix | 1160-1164 | 5 | |
| β-strand | 1171 | 1 | 38 |
| β-strand | 1173-1174 | 2 | 12 |
| α-helix | 1176-1179 | 4 | |
| α-helix | 1181-1184 | 4 | |
| α-helix | 1187-1197 | 11 | |
| α-helix | 1201-1215 | 15 | |
Chain F: 3 helices, 3 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 20-41 | 22 | |
| β-strand | 46-48 | 3 | 7 |
| β-strand | 54-56 | 3 | 7 |
| β-strand | 61-63 | 3 | 7 |
| α-helix | 66-70 | 5 | |
| α-helix | 79-89 | 11 | |
Chain L: 3 helices, 0 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 13-25 | 13 | |
| α-helix | 31-35 | 5 | |
| α-helix | 43-52 | 10 | |
Chain T: 11 helices, 4 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 459-461 | 3 | |
| α-helix | 462-468 | 7 | |
| α-helix | 472-474 | 3 | |
| α-helix | 477-479 | 3 | |
| α-helix | 485-492 | 8 | |
| α-helix | 502-504 | 3 | |
| α-helix | 526-529 | 4 | |
| α-helix | 533-544 | 12 | |
| α-helix | 569-576 | 8 | |
| α-helix | 611-617 | 7 | |
| α-helix | 632-639 | 8 | |
| β-strand | 651 | 1 | 10 |
| β-strand | 655 | 1 | 10 |
| β-strand | 683 | 1 | 11 |
| β-strand | 686 | 1 | 11 |
6 more chain groups are not listed. Open the entry in the viewer and use the sequence panel to see them.
Molecules and chains
| Molecule | Chains | Type | Length | Organism | UniProt |
|---|
| Cell division cycle 5-like protein | L | protein | 802 | Homo sapiens | Q99459 (AlphaFold model) |
| PHD finger-like domain-containing protein 5A | y | protein | 110 | Homo sapiens | Q7RTV0 (AlphaFold model) |
| MINX M3 pre-mRNA | Z | RNA | 230 | synthetic construct | |
| Splicing factor 3A subunit 2 | F | protein | 464 | Homo sapiens | Q15428 (AlphaFold model) |
| Splicing factor 3A subunit 3 | 4 | protein | 501 | Homo sapiens | Q12874 (AlphaFold model) |
| Splicing factor 3B subunit 1 | u | protein | 1304 | Homo sapiens | O75533 |
| Splicing factor 3B subunit 2 | T | protein | 895 | Homo sapiens | Q13435 |
| Splicing factor 3B subunit 3 | E | protein | 1217 | Homo sapiens | Q15393 |
| Splicing factor 3B subunit 4 | w | protein | 424 | Homo sapiens | Q15427 |
| Splicing factor 3B subunit 5 | x | protein | 86 | Homo sapiens | Q9BWJ5 |
| Splicing factor 3B subunit 6 | z | protein | 125 | Homo sapiens | Q9Y3B4 |
| Smad nuclear-interacting protein 1 | 0 | protein | 396 | Homo sapiens | Q8TAD8 |
4 more molecules are not listed.
Sequence of entity 1 (L), FASTA
>7ABH_1 Cell division cycle 5-like protein (chains L)
MPRIMIKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKK
TEWSREEEEKLLHLAKLMPTQWRTIAPIIGRTAAQCLEHYEFLLDKAAQRDNEEETTDDP
RKLKPGEIDPNPETKPARPDPIDMDEDELEMLSEARARLANTQGKKAKRKAREKQLEEAR
RLAALQKRRELRAAGIEIQKKRKRKRGVDYNAEIPFEKKPALGFYDTSEENYQALDADFR
KLRQQDLDGELRSEKEGRDRKKDKQHLKRKKESDLPSAILQTSGVSEFTKKRSKLVLPAP
QISDAELQEVVKVGQASEIARQTAEESGITNSASSTLLSEYNVTNNSVALRTPRTPASQD
RILQEAQNLMALTNVDTPLKGGLNTPLHESDFSGVTPQRQVVQTPNTVLSTPFRTPSNGA
EGLTPRSGTTPKPVINSTPGRTPLRDKLNINPEDGMADYSDPSYVKQMERESREHLRLGL
LGLPAPKNDFEIVLPENAEKELEEREIDDTYIEDAADVDARKQAIRDAERVKEMKRMHKA
VQKDLPRPSEVNETILRPLNVEPPLTDLQKSEELIKKEMITMLHYDLLHHPYEPSGNKKG
KTVGFGTNNSEHITYLEHNPYEKFSKEELKKAQDVLVQEMEVVKQGMSHGELSSEAYNQV
WEECYSQVLYLPGQSRYTRANLASKKDRIESLEKRLEINRGHMTTEAKRAAKMEKKMKIL
LGGYQSRAMGLMKQLNDLWDQIEQAHLELRTFEELKKHEDSAIPRRLECLKEDVQRQQER
EKELQHRYADLLLEKETLKSKF
Sequence of entity 2 (y), FASTA
>7ABH_2 PHD finger-like domain-containing protein 5A (chains y)
MAKHHPDLIFCRKQAGVAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVI
CGGPGVSDAYYCKECTIQEKDRDGCPKIVNLGSSKTDLFYERKKYGFKKR
Sequence of entity 3 (Z), FASTA
>7ABH_3 MINX M3 pre-mRNA (chains Z)
GGGAGACGGAAUUCGAGCUCGCCCACUCUUGGAUCGGAAACCCGUCGGCCUCCGAACGGU
AAGAGCCUAGCAUGUAGAACUGGUUACCUGCAGCCCAAGCUUGCUGCACGUCUAGGGCGC
AGUAGUCCAGGGUUUCCUUGAUGAUGUCAUACUUAUCCUGUCCCUUUUUUUUCCACAGCU
CGCGGUUGAGGACAAACUCUUCGCGGUCUUUCCAGUGGGGAUCCAAUAUC
Sequence of entity 4 (F), FASTA
>7ABH_4 Splicing factor 3A subunit 2 (chains F)
MDFQHRPGGKTGSGGVASSSESNRDRRERLRQLALETIDINKDPYFMKNHLGSYECKLCL
TLHNNEGSYLAHTQGKKHQTNLARRAAKEAKEAPAQPAPEKVKVEVKKFVKIGRPGYKVT
KQRDSEMGQQSLLFQIDYPEIAEGIMPRHRFMSAYEQRIEPPDRRWQYLLMAAEPYETIA
FKVPSREIDKAEGKFWTHWNRETKQFFLQFHFKMEKPPAPPSLPAGPPGVKRPPPPLMNG
LPPRPPLPESLPPPPPGGLPLPPMPPTGPAPSGPPGPPQLPPPAPGVHPPAPVVHPPASG
VHPPAPGVHPPAPGVHPPAPGVHPPTSGVHPPAPGVHPPAPGVHPPAPGVHPPAPGVHPP
APGVHPPPSAGVHPQAPGVHPAAPAVHPQAPGVHPPAPGMHPQAPGVHPQPPGVHPSAPG
VHPQPPGVHPSNPGVHPPTPMPPMLRPPLPSEGPGNIPPPPPTN
Sequence of entity 5 (4), FASTA
>7ABH_5 Splicing factor 3A subunit 3 (chains 4)
METILEQQRRYHEEKERLMDVMAKEMLTKKSTLRDQINSDHRTRAMQDRYMEVSGNLRDL
YDDKDGLRKEELNAISGPNEFAEFYNRLKQIKEFHRKHPNEICVPMSVEFEELLKARENP
SEEAQNLVEFTDEEGYGRYLDLHDCYLKYINLKASEKLDYITYLSIFDQLFDIPKERKNA
EYKRYLEMLLEYLQDYTDRVKPLQDQNELFGKIQAEFEKKWENGTFPGWPKETSSALTHA
GAHLDLSAFSSWEELASLGLDRLKSALLALGLKCGGTLEERAQRLFSTKGKSLESLDTSL
FAKNPKSKGTKRDTERNKDIAFLEAQIYEYVEILGEQRHLTHENVQRKQARTGEEREEEE
EEQISESESEDEENEIIYNPKNLPLGWDGKPIPYWLYKLHGLNINYNCEICGNYTYRGPK
AFQRHFAEWRHAHGMRCLGIPNTAHFANVTQIEDAVSLWAKLKLQKASERWQPDTEEEYE
DSSGNVVNKKTYEDLKRQGLL
Sequence of entity 6 (u), FASTA
>7ABH_6 Splicing factor 3B subunit 1 (chains u)
MAKIAKTHEDIEAQIREIQGKKAALDEAQGVGLDSTGYYDQEIYGGSDSRFAGYVTSIAA
TELEDDDDDYSSSTSLLGQKKPGYHAPVALLNDIPQSTEQYDPFAEHRPPKIADREDEYK
KHRRTMIISPERLDPFADGGKTPDPKMNARTYMDVMREQHLTKEEREIRQQLAEKAKAGE
LKVVNGAAASQPPSKRKRRWDQTADQTPGATPKKLSSWDQAETPGHTPSLRWDETPGRAK
GSETPGATPGSKIWDPTPSHTPAGAATPGRGDTPGHATPGHGGATSSARKNRWDETPKTE
RDTPGHGSGWAETPRTDRGGDSIGETPTPGASKRKSRWDETPASQMGGSTPVLTPGKTPI
GTPAMNMATPTPGHIMSMTPEQLQAWRWEREIDERNRPLSDEELDAMFPEGYKVLPPPAG
YVPIRTPARKLTATPTPLGGMTGFHMQTEDRTMKSVNDQPSGNLPFLKPDDIQYFDKLLV
DVDESTLSPEEQKERKIMKLLLKIKNGTPPMRKAALRQITDKAREFGAGPLFNQILPLLM
SPTLEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEGREIISNL
AKAAGLATMISTMRPDIDNMDEYVRNTTARAFAVVASALGIPSLLPFLKAVCKSKKSWQA
RHTGIKIVQQIAILMGCAILPHLRSLVEIIEHGLVDEQQKVRTISALAIAALAEAATPYG
IESFDSVLKPLWKGIRQHRGKGLAAFLKAIGYLIPLMDAEYANYYTREVMLILIREFQSP
DEEMKKIVLKVVKQCCGTDGVEANYIKTEILPPFFKHFWQHRMALDRRNYRQLVDTTVEL
ANKVGAAEIISRIVDDLKDEAEQYRKMVMETIEKIMGNLGAADIDHKLEEQLIDGILYAF
QEQTTEDSVMLNGFGTVVNALGKRVKPYLPQICGTVLWRLNNKSAKVRQQAADLISRTAV
VMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMHKMTPPIKDLLPRL
TPILKNRHEKVQENCIDLVGRIADRGAEYVSAREWMRICFELLELLKAHKKAIRRATVNT
FGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPE
LNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTASAVVQHMSLGVY
GFGCEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLRVAIGPCRMLQYCLQGLFHPARK
VRDVYWKIYNSIYIGSQDALIAHYPRIYNDDKNTYIRYELDYIL
Sequence of entity 7 (T), FASTA
>7ABH_7 Splicing factor 3B subunit 2 (chains T)
MATEHPEPPKAELQLPPPPPPGHYGAWAAQELQAKLAEIGAPIQGNREELVERLQSYTRQ
TGIVLNRPVLRGEDGDKAAPPPMSAQLPGIPMPPPPLGLPPLQPPPPPPPPPPGLGLGFP
MAHPPNLGPPPPLRVGEPVALSEEERLKLAQQQAALLMQQEERAKQQGDHSLKEHELLEQ
QKRAAVLLEQERQQEIAKMGTPVPRPPQDMGQIGVRTPLGPRVAAPVGPVGPTPTVLPMG
APVPRPRGPPPPPGDENREMDDPSVGPKIPQALEKILQLKESRQEEMNSQQEEEEMETDA
RSSLGQSASETEEDTVSVSKKEKNRKRRNRKKKKKPQRVRGVSSESSGDREKDSTRSRGS
DSPAADVEIEYVTEEPEIYEPNFIFFKRIFEAFKLTDDVKKEKEKEPEKLDKLENSAAPK
KKGFEEEHKDSDDDSSDDEQEKKPEAPKLSKKKLRRMNRFTVAELKQLVARPDVVEMHDV
TAQDPKLLVHLKATRNSVPVPRHWCFKRKYLQGKRGIEKPPFELPDFIKRTGIQEMREAL
QEKEEQKTMKSKMREKVRPKMGKIDIDYQKLHDAFFKWQTKPKLTIHGDLYYEGKEFETR
LKEKKPGDLSDELRISLGMPVGPNAHKVPPPWLIAMQRYGPPPSYPNLKIPGLNSPIPES
CSFGYHAGGWGKPPVDETGKPLYGDVFGTNAAEFQTKTEEEEIDRTPWGELEPSDEESSE
EEEEEESDEDKPDETGFITPADSGLITPGGFSSVPAGMETPELIELRKKKIEEAMDGSET
PQLFTVLPEKRTATVGGAMMGSTHIYDMSTVMSRKGPAPELQGVEVALAPEELELDPMAM
TQKYEEHVREQQAQVEKEDFSDMVAEHAAKQKQKKRKAQPQDSRGGSKKYKEFKF
Sequence of entity 8 (E), FASTA
>7ABH_8 Splicing factor 3B subunit 3 (chains E)
MFLYNLTLQRATGISFAIHGNFSGTKQQEIVVSRGKILELLRPDPNTGKVHTLLTVEVFG
VIRSLMAFRLTGGTKDYIVVGSDSGRIVILEYQPSKNMFEKIHQETFGKSGCRRIVPGQF
LAVDPKGRAVMISAIEKQKLVYILNRDAAARLTISSPLEAHKANTLVYHVVGVDVGFENP
MFACLEMDYEEADNDPTGEAAANTQQTLTFYELDLGLNHVVRKYSEPLEEHGNFLITVPG
GSDGPSGVLICSENYITYKNFGDQPDIRCPIPRRRNDLDDPERGMIFVCSATHKTKSMFF
FLAQTEQGDIFKITLETDEDMVTEIRLKYFDTVPVAAAMCVLKTGFLFVASEFGNHYLYQ
IAHLGDDDEEPEFSSAMPLEEGDTFFFQPRPLKNLVLVDELDSLSPILFCQIADLANEDT
PQLYVACGRGPRSSLRVLRHGLEVSEMAVSELPGNPNAVWTVRRHIEDEFDAYIIVSFVN
ATLVLSIGETVEEVTDSGFLGTTPTLSCSLLGDDALVQVYPDGIRHIRADKRVNEWKTPG
KKTIVKCAVNQRQVVIALTGGELVYFEMDPSGQLNEYTERKEMSADVVCMSLANVPPGEQ
RSRFLAVGLVDNTVRIISLDPSDCLQPLSMQALPAQPESLCIVEMGGTEKQDELGERGSI
GFLYLNIGLQNGVLLRTVLDPVTGDLSDTRTRYLGSRPVKLFRVRMQGQEAVLAMSSRSW
LSYSYQSRFHLTPLSYETLEFASGFASEQCPEGIVAISTNTLRILALEKLGAVFNQVAFP
LQYTPRKFVIHPESNNLIIIETDHNAYTEATKAQRKQQMAEEMVEAAGEDERELAAEMAA
AFLNENLPESIFGAPKAGNGQWASVIRVMNPIQGNTLDLVQLEQNEAAFSVAVCRFSNTG
EDWYVLVGVAKDLILNPRSVAGGFVYTYKLVNNGEKLEFLHKTPVEEVPAAIAPFQGRVL
IGVGKLLRVYDLGKKKLLRKCENKHIANYISGIQTIGHRVIVSDVQESFIWVRYKRNENQ
LIIFADDTYPRWVTTASLLDYDTVAGADKFGNICVVRLPPNTNDEVDEDPTGNKALWDRG
LLNGASQKAEVIMNYHVGETVLSLQKTTLIPGGSESLVYTTLSGGIGILVPFTSHEDHDF
FQHVEMHLRSEHPPLCGRDHLSFRSYYFPVKNVIDGDLCEQFNSMEPNKQKNVSEELDRT
PPEVSKKLEDIRTRYAF
Sequence of entity 9 (w), FASTA
>7ABH_9 Splicing factor 3B subunit 4 (chains w)
MAAGPISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVE
FLSEEDADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTF
SAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKK
DSKGERHGSAAERLLAAQNPLSQADRPHQLFADAPPPPSAPNPVVSSLGSGLPPPGMPPP
GSFPPPVPPPGALPPGIPPAMPPPPMPPGAAGHGPPSAGTPGAGHPGHGHSHPHPFPPGG
MPHPGMSQMQLAHHGPHGLGHPHAGPPGSGGQPPPRPPPGMPHPGPPPMGMPPRGPPFGS
PMGHPGPMPPHGMRGPPPLMPPHGYTGPPRPPPYGYQRGPLPPPRPTPRPPVPPRGPLRG
PLPQ
Sequence of entity 10 (x), FASTA
>7ABH_10 Splicing factor 3B subunit 5 (chains x)
MTDRYTIHSQLEHLQSKYIGTGHADTTKWEWLVNQHRDSYCSYMGHFDLLNYFAIAENES
KARVRFNLMEKMLQPCGPPADKPEEN
Sequence of entity 11 (z), FASTA
>7ABH_11 Splicing factor 3B subunit 6 (chains z)
MAMQAAKRANIRLPPEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTA
YVVYEDIFDAKNACDHLSGFNVCNRYLVVLYYNANRAFQKMDTKKKEEQLKLLKEKYGIN
TDPPK
Sequence of entity 12 (0), FASTA
>7ABH_12 Smad nuclear-interacting protein 1 (chains 0)
MKAVKSERERGSRRRHRDGDVVLPAGVVVKQERLSPEVAPPAHRRPDHSGGSPSPPTSEP
ARSGHRGNRARGVSRSPPKKKNKASGRRSKSPRSKRNRSPHHSTVKVKQEREDHPRRGRE
DRQHREPSEQEHRRARNSDRDRHRGHSHQRRTSNERPGSGQGQGRDRDTQNLQAQEEERE
FYNARRREHRQRNDVGGGGSESQELVPRPGGNNKEKEVPAKEKPSFELSGALLEDTNTFR
GVVIKYSEPPEARIPKKRWRLYPFKNDEVLPVMYIHRQSAYLLGRHRRIADIPIDHPSCS
KQHAVFQYRLVEYTRADGTVGRRVKPYIIDLGSGNGTFLNNKRIEPQRYYELKEKDVLKF
GFSSREYVLLHESSDTSEIDRKDDEDEEEEEEVSDS
Primary citation
Mechanism of protein-guided folding of the active site U2/U6 RNA during spliceosome activation. Townsend, C., Leelaram, M.N., Agafonov, D.E. et al. Science (2020) 370. DOI 10.1126/science.abc3753 · PubMed
Other PDB entries of the same protein (UniProt Q99459 (AlphaFold model), which also has an AlphaFold model), best resolution first:
- 9S2E 2.4 Å, Human intron-lariat spliceosome-Aquarius (ILSaqr)
- 8C6J 2.8 Å, Human spliceosomal PM5 C* complex
- 6ID1 2.86 Å, Cryo-EM structure of a human intron lariat spliceosome after Prp43 loaded (ILS2 complex)…
- 7DVQ 2.89 Å, Cryo-EM Structure of the Activated Human Minor Spliceosome (minor Bact Complex)
- 6ID0 2.9 Å, Cryo-EM structure of a human intron lariat spliceosome prior to Prp43 loaded (ILS1…
- 9XTT 2.92 Å, Human minor spliceosome branching-completed C complex (after step-I)
- 6ICZ 3.0 Å, Cryo-EM structure of a human post-catalytic spliceosome (P complex) at 3.0 angstrom
- 8I0R 3.0 Å, The cryo-EM structure of human Bact-I complex
- 8I0T 3.0 Å, The cryo-EM structure of human Bact-III complex
- 8I0V 3.0 Å, The cryo-EM structure of human post-Bact complex
- 9XU3 3.0 Å, Human minor spliceosome exon-ligation-ready C* complex (prior to step-II)
- 7QTT 3.1 Å, Structural organization of a late activated human spliceosome (Baqr, core region)
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