7D86: ZebrafishPHF14-PZP

Crystal Structure of zebrafishPHF14-PZP. Determined by X-ray diffraction at 1.84 Å resolution. Released 28 Jul 2021.

Method
X-ray diffraction
Resolution
1.84 Å
Organism
Danio rerio
Chains
1
Atoms
1,535
Mol. weight
23.76 kDa
Ligands
MG, ZN
Released
28 Jul 2021

Explore 7D86 in 3D Show helices and sheets RCSB PDB PDBe

Secondary structure: helices and β-sheets

7D86 contains 10 α-helices and 10 β-strands across 1 chain. Residue ranges use author residue numbering, as in the PDB file, from PDBe. To see them in 3D, choose the Cartoon representation with Secondary structure coloring: helices, sheets and coils get different colors.

Chain A: 10 helices, 10 β-strands

ElementResiduesLengthSheet
β-strand302-30431
β-strand311-31331
α-helix314-3174
α-helix341-3444
β-strand361-36332
β-strand36413
β-strand369-37132
α-helix372-3776
α-helix383-3853
β-strand39213
α-helix396-3994
α-helix413-4153
β-strand421-42334
β-strand432-43434
α-helix435-4406
β-strand444-44635
α-helix449-4513
β-strand457-45935
α-helix467-48014
α-helix481-4833

Molecules and chains

MoleculeChainsTypeLengthOrganismUniProt
PHD finger protein 14Aprotein211Danio rerioA0A286Y9D1 (AlphaFold model)
Sequence of entity 1 (A), FASTA
>7D86_1 PHD finger protein 14 (chains A)
SSSQRMEHILICCVCLGDNSEDADEIIQCDNCGVTVHEGCYGVDGESDSIMSSASENSTE
PWFCDACKNGVSPSCELCPSQDGIFKETDAGRWVHVVCALYVPGVAFGDIDKLRPVTLTE
MNYSKYGAKECSLCEDTRFARTGVCISCDAGMCRSFFHVTCAQREGLLSEAAAEEDIADP
FFAYCKQHADRFDRKWKRKNYLALQSYCKVS

Ligands and cofactors

IDNameFormulaCopies
MGMagnesium ionMg1
ZNZinc ionZn5

Water and common crystallization additives (EDO) are not listed.

Primary citation

Molecular basis for bipartite recognition of histone H3 by the PZP domain of PHF14. Zheng, S., Bi, Y., Chen, H. et al. Nucleic Acids Res (2021) 49:8961-8973. DOI 10.1093/nar/gkab670 · PubMed

Other PDB entries of the same protein (UniProt A0A286Y9D1 (AlphaFold model), which also has an AlphaFold model), best resolution first:

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