7DU2: DNA-directed RNA polymerase III subunit RPC1

RNA polymerase III EC complex in post-translocation state. Determined by electron microscopy at 3.35 Å resolution. Released 17 Mar 2021.

Method
Electron microscopy
Resolution
3.35 Å
Organism
Homo sapiens
Chains
20
Atoms
36,616
Mol. weight
720.14 kDa
Ligands
MG, ZN, SF4
Released
17 Mar 2021

Explore 7DU2 in 3D Show helices and sheets RCSB PDB PDBe

Secondary structure: helices and β-sheets

7DU2 contains 183 α-helices and 237 β-strands across 17 chains. Residue ranges use author residue numbering, as in the PDB file, from PDBe. To see them in 3D, choose the Cartoon representation with Secondary structure coloring: helices, sheets and coils get different colors.

Chain A: 60 helices, 52 β-strands

ElementResiduesLengthSheet
α-helix51
β-strand611
α-helix71
β-strand14-2182
α-helix29-313
β-strand34-3523
β-strand84-93103
α-helix98-1058
β-strand10814
β-strand11514
α-helix119-12911
α-helix137-15014
β-strand15515
β-strand16215
β-strand16616
β-strand175-17626
β-strand216-21726
α-helix220-2267
α-helix236-2383
α-helix247-2504
β-strand251-25773
α-helix258-2592
α-helix260-2623
α-helix280-29516
α-helix303-31917
α-helix352-3565
β-strand360-36127
β-strand364-37188
β-strand379-38248
α-helix384-3874
β-strand391-39559
α-helix401-4088
β-strand418-42259
α-helix427-4293
α-helix437-4426
β-strand449-45359
β-strand458-46368
α-helix470-4723
β-strand475-48068
β-strand486-48838
β-strand504-50858
α-helix513-5175
α-helix518-5225
β-strand530110
β-strand537110
α-helix544-5529
α-helix561-5688
α-helix583-5864
β-strand588111
β-strand594111
α-helix597-6059
β-strand617-620412
β-strand637-640412
β-strand645-647312
α-helix663-6719
α-helix674-69421
α-helix700-7023
α-helix707-73226
α-helix747-77024
α-helix776-7827
α-helix789-7924
α-helix793-7975
β-strand801113
α-helix809-8102
β-strand813114
β-strand816114
β-strand833113
α-helix844-87633
β-strand883-884215
β-strand890-891215
β-strand897-899315
α-helix902-9043
α-helix9121
β-strand913116
β-strand917116
α-helix921-93111
α-helix945-9517
α-helix965-98622
α-helix998-10025
α-helix1010-102415
α-helix1027-10282
α-helix1033-104614
α-helix1067-10759
β-strand1085-1089517
α-helix1095-110511
β-strand1108-1109218
α-helix1111-11133
β-strand1118-1122519
β-strand1125-1129519
β-strand1130120
α-helix1134-11396
α-helix1146-11538
β-strand1166-1168320
β-strand1173-1175320
α-helix1187-11959
α-helix1196-11983
β-strand1200-1202318
β-strand1210-1213417
β-strand1224-1227417
α-helix1232-12365
β-strand1241-1247717
α-helix1251-12588
α-helix1261-127717
α-helix1284-129411
β-strand1297-1298221
α-helix1305-13095
α-helix1315-13195
α-helix1324-133310
β-strand1337-133932
α-helix1346-13494
α-helix1351-13533
β-strand1361-136441
Chain B: 40 helices, 80 β-strands
ElementResiduesLengthSheet
α-helix29-379
α-helix42-5211
β-strand65122
β-strand75122
β-strand82123
β-strand86-87224
β-strand95-96224
α-helix99-1024
β-strand110-113423
β-strand134-137423
α-helix152-1576
β-strand169-171325
β-strand174-178525
β-strand180-184526
β-strand189-191327
β-strand199-201327
β-strand204128
β-strand211128
β-strand214-216327
β-strand218-219229
β-strand222-223229
β-strand224130
β-strand230131
β-strand235130
α-helix236-2427
α-helix248-2558
α-helix262-2654
α-helix266-2705
α-helix271-2744
α-helix281-29111
β-strand292131
α-helix311-3144
α-helix329-34315
β-strand360-363426
α-helix365-39127
α-helix405-4073
α-helix408-42013
β-strand423132
β-strand426133
β-strand431133
β-strand434132
β-strand437-439325
α-helix446-4527
β-strand455-456226
α-helix471-4722
α-helix473-4753
β-strand479134
β-strand493-494226
β-strand496134
β-strand501-502235
α-helix509-51810
β-strand538-541436
β-strand544-548536
α-helix552-56514
β-strand573-577536
β-strand582-586536
β-strand591126
β-strand592-598735
β-strand599137
β-strand604137
α-helix609-6168
α-helix621-6266
β-strand630-634535
α-helix637-6404
β-strand644135
β-strand656-657235
α-helix661-6644
α-helix680-69112
β-strand693138
β-strand709-712439
β-strand716140
α-helix724-7285
β-strand739-741341
β-strand756-758342
α-helix761-7644
β-strand769-772439
β-strand773143
β-strand776-778344
β-strand789145
α-helix815-8162
β-strand820-821243
β-strand825-833945
β-strand851-858845
β-strand864-866343
β-strand870-872344
β-strand880-882344
β-strand885-886243
β-strand896-897246
β-strand905-906246
β-strand909-911342
α-helix913-9153
β-strand919147
β-strand927-928242
α-helix929-9302
α-helix933-9375
α-helix940-95516
α-helix969-9768
β-strand986-987248
β-strand989147
β-strand990149
β-strand997149
α-helix9981
β-strand1002-1003248
β-strand1005-1007341
α-helix1009-10102
β-strand1011146
β-strand1012138
α-helix1016-10183
β-strand1021-102338
β-strand1028150
β-strand1035150
β-strand1045-104627
α-helix1049-10579
α-helix1061-10655
α-helix1066-10705
β-strand1075-1080651
β-strand1086151
β-strand1101-1106651
α-helix1108-111710
β-strand1123-112972
Chain C: 10 helices, 19 β-strands
ElementResiduesLengthSheet
β-strand13-15352
α-helix42-476
β-strand50153
β-strand53-54254
β-strand61155
β-strand62-63254
β-strand66153
α-helix73-8210
β-strand86-971256
α-helix103-1097
β-strand140-145656
β-strand167-169357
β-strand173-175356
β-strand198-201457
β-strand207-2171156
α-helix223-2253
β-strand228-230358
β-strand233-241952
α-helix249-2568
α-helix259-2613
β-strand263159
β-strand274159
α-helix278-2803
α-helix287-2893
α-helix293-2953
β-strand297-3081252
β-strand310155
β-strand311-312258
α-helix318-34225
Chain D: 8 helices, 1 β-strand
ElementResiduesLengthSheet
β-strand3-531
α-helix13-2715
α-helix34-374
α-helix41-5515
α-helix63-7614
α-helix80-8910
α-helix94-952
α-helix96-1005
α-helix112-12110
Chain E: 9 helices, 12 β-strands
ElementResiduesLengthSheet
α-helix12-2312
β-strand26166
α-helix30-334
α-helix37-404
β-strand61-62267
β-strand64166
β-strand72-73267
β-strand81-82268
α-helix84-896
α-helix92-965
β-strand103-105369
β-strand109-110268
α-helix114-1207
β-strand128-130369
α-helix132-1354
β-strand147-150421
α-helix153-16311
β-strand172-173221
α-helix178-1836
β-strand190-195621
β-strand203-209721
Chain F: 3 helices, 4 β-strands
ElementResiduesLengthSheet
β-strand56170
α-helix59-7315
α-helix77-793
α-helix89-9810
β-strand104-10961
β-strand115-11951
β-strand124170
Chain G: 2 helices, 15 β-strands
ElementResiduesLengthSheet
β-strand3-13111
α-helix15-173
α-helix22-3110
β-strand37-3931
β-strand43-4531
β-strand50-5451
β-strand58-5921
β-strand66-77121
β-strand83-87560
β-strand88161
β-strand92-93262
β-strand96-97262
β-strand100161
β-strand101163
β-strand105163
β-strand146-152760
β-strand189-191360
Chain H: 0 helices, 12 β-strands
ElementResiduesLengthSheet
β-strand4-141171
β-strand25-31771
β-strand39-44671
β-strand55-61771
β-strand90172
β-strand92111
β-strand93-98671
β-strand113-118671
β-strand121-126671
β-strand139-143571
β-strand145172
β-strand146-147271

9 more chain groups are not listed. Open the entry in the viewer and use the sequence panel to see them.

Molecules and chains

MoleculeChainsTypeLengthOrganismUniProt
DNA-directed RNA polymerase III subunit RPC1Aprotein1390Homo sapiensO14802 (AlphaFold model)
DNA-directed RNA polymerase III subunit RPC2Bprotein1133Homo sapiensQ9NW08 (AlphaFold model)
DNA-directed RNA polymerases I and III subunit RPAC1Cprotein346Homo sapiensO15160 (AlphaFold model)
DNA-directed RNA polymerase III subunit RPC8Gprotein204Homo sapiensQ9Y535 (AlphaFold model)
DNA-directed RNA polymerases I and III subunit RPAC2Kprotein133Homo sapiensP0DPB6
DNA-directed RNA polymerases I, II, and III subunit RPABC4Lprotein58Homo sapiensP53803
DNA-directed RNA polymerase III subunit RPC6Pprotein316Homo sapiensQ9H1D9
DNA-directed RNA polymerases I, II, and III subunit RPABC1Eprotein210Homo sapiensP19388
DNA-directed RNA polymerases I, II, and III subunit RPABC2Fprotein127Homo sapiensP61218
DNA-directed RNA polymerases I, II, and III subunit RPABC3Hprotein150Homo sapiensP52434
DNA-directed RNA polymerases I, II, and III subunit RPABC5Jprotein67Homo sapiensP62875
DNA-directed RNA polymerase III subunit RPC3Oprotein534Homo sapiensQ9BUI4

8 more molecules are not listed.

Sequence of entity 1 (A), FASTA
>7DU2_1 DNA-directed RNA polymerase III subunit RPC1 (chains A)
MVKEQFRETDVAKKISHICFGMKSPEEMRQQAHIQVVSKNLYSQDNQHAPLLYGVLDHRM
GTSEKDRPCETCGKNLADCLGHYGYIDLELPCFHVGYFRAVIGILQMICKTCCHIMLSQE
EKKQFLDYLKRPGLTYLQKRGLKKKISDKCRKKNICHHCGAFNGTVKKCGLLKIIHEKYK
TNKKVVDPIVSNFLQSFETAIEHNKEVEPLLGRAQENLNPLVVLNLFKRIPAEDVPLLLM
NPEAGKPSDLILTRLLVPPLCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRISG
AKTQMIMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKR
VDFSGRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVQNGPEVHPGANF
IQQRHTQMKRFLKYGNREKMAQELKYGDIVERHLIDGDVVLFNRQPSLHKLSIMAHLARV
KPHRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALVLMGTKANLVTPRNGEPLIA
AIQDFLTGAYLLTLKDTFFDRAKACQIIASILVGKDEKIKVRLPPPTILKPVTLWTGKQI
FSVILRPSDDNPVRANLRTKGKQYCGKGEDLCANDSYVTIQNSELMSGSMDKGTLGSGSK
NNIFYILLRDWGQNEAADAMSRLARLAPVYLSNRGFSIGIGDVTPGQGLLKAKYELLNAG
YKKCDEYIEALNTGKLQQQPGCTAEETLEALILKELSVIRDHAGSACLRELDKSNSPLTM
ALCGSKGSFINISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKLPAAKGFVANSFYS
GLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVRSSTGDIIQF
IYGGDGLDPAAMEGKDEPLEFKRVLDNIKAVFPCPSEPALSKNELILTTESIMKKSEFLC
CQDSFLQEIKKFIKGVSEKIKKTRDKYGINDNGTTEPRVLYQLDRITPTQVEKFLETCRD
KYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASMNITLGVPRIKEIINASKAI
STPIITAQLDKDDDADYARLVKGRIEKTLLGEISEYIEEVFLPDDCFILVKLSLERIRLL
RLEVNAETVRYSICTSKLRVKPGDVAVHGEAVVCVTPRENSKSSMYYVLQFLKEDLPKVV
VQGIPEVSRAVIHIDEQSGKEKYKLLVEGDNLRAVMATHGVKGTRTTSNNTYEVEKTLGI
EAARTTIINEIQYTMVNHGMSIDRRHVMLLSDLMTYKGEVLGITRFGLAKMKESVLMLAS
FEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTGLFKLLHKADRDPNPPKRPLIFD
TNEFHIPLVT
Sequence of entity 2 (B), FASTA
>7DU2_2 DNA-directed RNA polymerase III subunit RPC2 (chains B)
MDVLAEEFGNLTPEQLAAPIPTVEEKWRLLPAFLKVKGLVKQHIDSFNYFINVEIKKIMK
ANEKVTSDADPMWYLKYLNIYVGLPDVEESFNVTRPVSPHECRLRDMTYSAPITVDIEYT
RGSQRIIRNALPIGRMPIMLRSSNCVLTGKTPAEFAKLNECPLDPGGYFIVKGVEKVILI
QEQLSKNRIIVEADRKGAVGASVTSSTHEKKSRTNMAVKQGRFYLRHNTLSEDIPIVIIF
KAMGVESDQEIVQMIGTEEHVMAAFGPSLEECQKAQIFTQMQALKYIGNKVRRQRMWGGG
PKKTKIEEARELLASTILTHVPVKEFNFRAKCIYTAVMVRRVILAQGDNKVDDRDYYGNK
RLELAGQLLSLLFEDLFKKFNSEMKKIADQVIPKQRAAQFDVVKHMRQDQITNGMVNAIS
TGNWSLKRFKMDRQGVTQVLSRLSYISALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLC
PSDTPEGEACGLVKNLALMTHITTDMEDGPIVKLASNLGVEDVNLLCGEELSYPNVFLVF
LNGNILGVIRDHKKLVNTFRLMRRAGYINEFVSISTNLTDRCVYISSDGGRLCRPYIIVK
KQKPAVTNKHMEELAQGYRNFEDFLHESLVEYLDVNEENDCNIALYEHTINKDTTHLEIE
PFTLLGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQKPMV
KTKTIELIEFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLK
RYTNQTFDKVMGPMLDAATRKPIWRHEILDADGICSPGEKVENKQVLVNKSMPTVTQIPL
EGSNVPQQPQYKDVPITYKGATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFSSR
HGQKGVCGLIVPQEDMPFCDSGICPDIIMNPHGFPSRMTVGKLIELLAGKAGVLDGRFHY
GTAFGGSKVKDVCEDLVRHGYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKM
HARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLLERLMISSDAFEVDVC
GQCGLLGYSGWCHYCKSSCHVSSLRIPYACKLLFQELQSMNIIPRLKLSKYNE
Sequence of entity 3 (C), FASTA
>7DU2_3 DNA-directed RNA polymerases I and III subunit RPAC1 (chains C)
MAASQAVEEMRSRVVLGEFGVRNVHTTDFPGNYSGYDDAWDQDRFEKNFRVDVVHMDENS
LEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPIHADPR
LFEYRNQGDEEGTEIDTLQFRLQVRCTRNPHAAKDSSDPNELYVNHKVYTRHMTWIPLGN
QADLFPEGTIRPVHDDILIAQLRPGQEIDLLMHCVKGIGKDHAKFSPVATASYRLLPDIT
LLEPVEGEAAEELSRCFSPGVIEVQEVQGKKVARVANPRLDTFSREIFRNEKLKKVVRLA
RVRDHYIFSVESTGVLPPDVLVSEAIKVLMGKCRRFLDELDAVQMD
Sequence of entity 4 (G), FASTA
>7DU2_4 DNA-directed RNA polymerase III subunit RPC8 (chains G)
MFVLVEMVDTVRIPPWQFERKLNDSIAEELNKKLANKVVYNVGLCICLFDITKLEDAYVF
PGDGASHTKVHFRCVVFHPFLDEILIGKIKGCSPEGVHVSLGFFDDILIPPESLQQPAKF
DEAEQVWVWEYETEEGAHDLYMDTGEEIRFRVVDESFVDTSPTGPSSADATTSSEELPKK
EAPYTLVGSISEPGLGLLSWWTSN
Sequence of entity 5 (K), FASTA
>7DU2_5 DNA-directed RNA polymerases I and III subunit RPAC2 (chains K)
MEEDQELERKISGLKTSMAEGERKTALEMVQAAGTDRHCVTFVLHEEDHTLGNSLRYMIM
KNPEVEFCGYTTTHPSESKINLRIQTRGTLPAVEPFQRGLNELMNVCQHVLDKFEASIKD
YKDQKASRNESTF
Sequence of entity 6 (L), FASTA
>7DU2_6 DNA-directed RNA polymerases I, II, and III subunit RPABC4 (chains L)
MDTQKDVQPPKQQPMIYICGECHTENEIKSRDPIRCRECGYRIMYKKRTKRLVVFDAR
Sequence of entity 7 (P), FASTA
>7DU2_7 DNA-directed RNA polymerase III subunit RPC6 (chains P)
MAEVKVKVQPPDADPVEIENRIIELCHQFPHGITDQVIQNEMPHIEAQQRAVAINRLLSM
GQLDLLRSNTGLLYRIKDSQNAGKMKGSDNQEKLVYQIIEDAGNKGIWSRDIRYKSNLPL
TEINKILKNLESKKLIKAVKSVAASKKKVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVL
NQQCFKFLQSKAETARESKQNPMIQRNSSFASSHEVWKYICELGISKVELSMEDIETILN
TLIYDGKVEMTIIAAKEGTVGSVDGHMKLYRAVNPIIPPTGLVRAPCGLCPVFDDCHEGG
EISPSNCIYMTEWLEF
Sequence of entity 8 (E), FASTA
>7DU2_8 DNA-directed RNA polymerases I, II, and III subunit RPABC1 (chains E)
MDDEEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQSGDKPSEGRPRRTDLTV
LVAHNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVD
MAPKYILEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRENQLPRIQAGDPVA
RYFGIKRGQVVKIIRPSETAGRYITYRLVQ
Sequence of entity 9 (F), FASTA
>7DU2_9 DNA-directed RNA polymerases I, II, and III subunit RPABC2 (chains F)
MSDNEDNFDGDDFDDVEEDEGLDDLENAEEEGQENVEILPSGERPQANQKRITTPYMTKY
ERARVLGTRALQIAMCAPVMVELEGETDPLLIAMKELKARKIPIIIRRYLPDGSYEDWGV
DELIITD
Sequence of entity 10 (H), FASTA
>7DU2_10 DNA-directed RNA polymerases I, II, and III subunit RPABC3 (chains H)
MAGILFEDIFDVKDIDPEGKKFDRVSRLHCESESFKMDLILDVNIQIYPVDLGDKFRLVI
ASTLYEDGTLDDGEYNPTDDRPSRADQFEYVMYGKVYRIEGDETSTEAATRLSAYVSYGG
LLMRLQGDANNLHGFEVDSRVYLLMKKLAF
Sequence of entity 11 (J), FASTA
>7DU2_11 DNA-directed RNA polymerases I, II, and III subunit RPABC5 (chains J)
MIIPVRCFTCGKIVGNKWEAYLGLLQAEYTEGDALDALGLKRYCCRRMLLAHVDLIEKLL
NYAPLEK
Sequence of entity 12 (O), FASTA
>7DU2_12 DNA-directed RNA polymerase III subunit RPC3 (chains O)
MTQAEIKLCSLLLQEHFGEIVEKIGVHLIRTGSQPLRVIAHDTGTSLDQVKKALCVLVQH
NLVSYQVHKRGVVEYEAQCSRVLRMLRYPRYIYTTKTLYSDTGELIVEELLLNGKLTMSA
VVKKVADRLTETMEDGKTMDYAEVSNTFVRLADTHFVQRCPSVPTTENSDPGPPPPAPTL
VINEKDMYLVPKLSLIGKGKRRRSSDEDAAGEPKAKRPKYTTDNKEPIPDDGIYWQANLD
RFHQHFRDQAIVSAVANRMDQTSSEIVRTMLRMSEITTSSSAPFTQPLSSNEIFRSLPVG
YNISKQVLDQYLTLLADDPLEFVGKSGDSGGGMYVINLHKALASLATATLESVVQERFGS
RCARIFRLVLQKKHIEQKQVEDFAMIPAKEAKDMLYKMLSENFMSLQEIPKTPDHAPSRT
FYLYTVNILSAARMLLHRCYKSIANLIERRQFETKENKRLLEKSQRVEAIIASMQATGAE
EAQLQEIEEMITAPERQQLETLKRNVNKLDASEIQVDETIFLLESYIECTMKRQ

Ligands and cofactors

IDNameFormulaCopies
MGMagnesium ionMg1
ZNZinc ionZn6
SF4Iron/sulfur clusterFe4 S41

Primary citation

Structure of human RNA polymerase III elongation complex. Li, L., Yu, Z., Zhao, D. et al. Cell Res (2021) 31:791-800. DOI 10.1038/s41422-021-00472-2 · PubMed

Other PDB entries of the same protein (UniProt O14802 (AlphaFold model), which also has an AlphaFold model), best resolution first:

Browse structure collections

About this viewer

MolViewer shows 7DU2 directly in your browser with nothing to install. Switch between cartoon, ball-and-stick, spacefill and surface views, color by chain, secondary structure or B-factor, measure distances, angles and dihedrals, and share or embed the view.