7NKY: DNA-directed RNA polymerase II subunit RPB1

Name: PDB 7NKY: RNA Polymerase II-Spt4/5-nucleosome-FACT structure
Published: 2021-07-07
License: https://creativecommons.org/publicdomain/zero/1.0/
Keywords: transcription

RNA Polymerase II-Spt4/5-nucleosome-FACT structure. Determined by electron microscopy at 3.2 Å resolution. Released 7 Jul 2021.

Method: Electron microscopy
Resolution: 3.2 Å
Organisms: synthetic RNA, synthetic construct, Saccharomyces cerevisiae
Chains: 27
Atoms: 51,842
Mol. weight: 1026.15 kDa
Ligands: ZN, MG
Released: 7 Jul 2021

Explore 7NKY in 3D Show helices and sheets RCSB PDB PDBe

Secondary structure: helices and β-sheets

7NKY contains 247 α-helices and 314 β-strands across 24 chains. Residue ranges use author residue numbering, as in the PDB file, from PDBe. To see them in 3D, choose the Cartoon representation with Secondary structure coloring: helices, sheets and coils get different colors.

Chain a: 4 helices, 1 β-strand

Element	Residues	Length	Sheet
α-helix	46-56	11
α-helix	64-78	15
α-helix	86-114	29
β-strand	118-119	2	91
α-helix	121-131	11

Chain A: 80 helices, 73 β-strands

Element	Residues	Length	Sheet
α-helix	10	1
β-strand	11-12	2	1
β-strand	16-18	3	2
α-helix	24-30	7
β-strand	33-34	2	3
β-strand	37	1	4
α-helix	43-45	3
β-strand	52	1	4
α-helix	56-58	3
β-strand	82-90	9	3
α-helix	96-105	10
β-strand	106	1	5
β-strand	113	1	5
α-helix	120-127	8
α-helix	131-144	14
β-strand	147	1	6
β-strand	151-153	3	7
β-strand	161-163	3	7
α-helix	169	1
β-strand	170	1	6
α-helix	171-172	2
β-strand	173-177	5	8
β-strand	180-184	5	8
β-strand	200-201	2	8
α-helix	202-203	2
α-helix	204-213	10
α-helix	216-221	6
β-strand	225	1	9
β-strand	229	1	9
α-helix	231-234	4
β-strand	236-241	6	3
α-helix	242	1
α-helix	244-246	3
α-helix	248-249	2
β-strand	250-251	2	10
β-strand	257-258	2	10
α-helix	261-281	21
α-helix	288-304	17
α-helix	312-314	3
β-strand	315	1	11
β-strand	321	1	11
α-helix	325-330	6
α-helix	337-341	5
β-strand	343-345	3	12
β-strand	348-355	8	13
β-strand	363-367	5	13
α-helix	368-373	6
β-strand	375-379	5	14
α-helix	385-394	10
β-strand	402-406	5	14
β-strand	412-414	3	14
β-strand	431-435	5	14
α-helix	436	1
β-strand	441-446	6	13
α-helix	452-454	3
β-strand	455-463	9	13
β-strand	468-470	3	13
α-helix	472-474	3
α-helix	475-478	4
β-strand	486-490	5	13
α-helix	495-504	10
β-strand	506	1	13
β-strand	512	1	15
β-strand	519	1	15
α-helix	525-535	11
β-strand	540-541	2	16
α-helix	543-552	10
α-helix	560-563	4
β-strand	565	1	17
β-strand	571	1	17
β-strand	572-573	2	16
α-helix	574-579	6
α-helix	583	1
β-strand	588-590	3	18
β-strand	605-608	4	18
β-strand	611-614	4	18
α-helix	619-622	4
α-helix	629-636	8
α-helix	639-660	22
β-strand	663	1	19
α-helix	666-669	4
α-helix	673-699	27
α-helix	703-705	3
α-helix	710-736	27
α-helix	742-749	8
α-helix	755-758	4
α-helix	759-763	5
α-helix	767-769	3
β-strand	770	1	20
β-strand	773	1	20
α-helix	810-844	35
β-strand	849-851	3	21
β-strand	855-857	3	21
β-strand	863-865	3	21
α-helix	868-870	3
β-strand	873	1	22
α-helix	875-877	3
β-strand	879-882	4	23
α-helix	890-897	8
α-helix	907-909	3
α-helix	910-912	3
β-strand	913	1	24
α-helix	916-919	4
α-helix	923-946	24
β-strand	953-956	4	23
α-helix	960-971	12
α-helix	978	1
β-strand	979	1	24
α-helix	983-996	14
α-helix	1005-1014	10
α-helix	1016-1025	10
α-helix	1028-1029	2
α-helix	1030-1034	5
α-helix	1039-1056	18
β-strand	1057	1	22
α-helix	1064-1078	15
α-helix	1098-1105	8
β-strand	1116-1117	2	25
β-strand	1118	1	26
α-helix	1119	1
β-strand	1120	1	27
α-helix	1121	1
α-helix	1128-1138	11
β-strand	1141-1142	2	28
α-helix	1143-1146	4
β-strand	1147-1151	5	29
β-strand	1154	1	30
α-helix	1164-1166	3
α-helix	1167-1174	8
β-strand	1191	1	30
β-strand	1192-1197	6	29
α-helix	1199-1205	7
α-helix	1209-1219	11
β-strand	1224-1225	2	29
β-strand	1228	1	29
β-strand	1236-1242	7	29
α-helix	1256-1270	15
β-strand	1272-1274	3	28
β-strand	1282-1292	11	26
β-strand	1298-1308	11	26
α-helix	1313-1316	4
β-strand	1322	1	27
β-strand	1328-1329	2	25
α-helix	1333-1339	7
α-helix	1341-1358	18
α-helix	1365-1376	12
α-helix	1389-1391	3
α-helix	1396-1401	6
α-helix	1405-1415	11
β-strand	1418-1419	2	2
α-helix	1424-1430	7
β-strand	1442-1445	4	31
α-helix	1447-1453	7

Chain b: 3 helices, 2 β-strands

Element	Residues	Length	Sheet
α-helix	31-40	10
β-strand	45-46	2	91
α-helix	50-76	27
α-helix	83-93	11
β-strand	97-98	2	92

Chain B: 51 helices, 68 β-strands

Element	Residues	Length	Sheet
α-helix	23-25	3
α-helix	27-40	14
α-helix	45-53	9
α-helix	54-58	5
α-helix	59-65	7
β-strand	91-100	10	32
β-strand	101-103	3	33
β-strand	109-111	3	33
α-helix	114-120	7
β-strand	125-133	9	32
β-strand	165-171	7	32
α-helix	186-191	6
β-strand	203-205	3	34
β-strand	208-212	5	34
α-helix	213	1
β-strand	214-218	5	35
α-helix	219	1
β-strand	223-226	4	36
β-strand	234-243	10	36
β-strand	251-259	9	36
β-strand	269-272	4	36
β-strand	279-281	3	36
α-helix	282-289	8
α-helix	294-301	8
α-helix	309-320	12
α-helix	327-338	12
α-helix	349-354	6
α-helix	355-359	5
α-helix	372-389	18
α-helix	394-396	3
α-helix	401-403	3
β-strand	404-407	4	35
α-helix	409-434	26
α-helix	451-463	13
β-strand	480-482	3	34
α-helix	488-495	8
β-strand	497-499	3	35
α-helix	510-512	3
α-helix	516-518	3
β-strand	522	1	37
β-strand	537-538	2	35
β-strand	539	1	37
β-strand	544-545	2	38
α-helix	552-561	10
β-strand	564-565	2	39
α-helix	577	1
β-strand	578-582	5	39
β-strand	585-590	6	39
α-helix	593-606	14
β-strand	614-618	5	39
β-strand	623-627	5	39
β-strand	633-639	7	38
β-strand	640-641	2	40
β-strand	650-651	2	40
α-helix	655-667	13
α-helix	681-686	6
β-strand	690-694	5	38
α-helix	697-700	4
α-helix	702	1
β-strand	703-704	2	38
α-helix	728-729	2
α-helix	731-733	3
β-strand	740-741	2	38
α-helix	745-748	4
α-helix	752-754	3
α-helix	759-761	3
α-helix	764-776	13
β-strand	777	1	41
β-strand	779	1	42
β-strand	793-796	4	42
β-strand	800	1	43
α-helix	809-812	4
β-strand	821-827	7	44
β-strand	828	1	19
β-strand	838-842	5	44
α-helix	843-848	6
β-strand	853-862	10	42
β-strand	865	1	45
β-strand	871	1	45
β-strand	873-874	2	46
β-strand	898	1	47
α-helix	899-900	2
β-strand	904-906	3	42
β-strand	910-912	3	47
β-strand	914-915	2	46
β-strand	936	1	46
β-strand	939-940	2	47
α-helix	941-942	2
β-strand	946-956	11	42
β-strand	962-972	11	42
β-strand	979-982	4	44
β-strand	987-994	8	44
β-strand	1001-1002	2	48
β-strand	1010-1012	3	44
α-helix	1016-1020	5
α-helix	1023-1038	16
α-helix	1052-1062	11
β-strand	1069-1070	2	44
β-strand	1072-1073	2	48
α-helix	1079	1
β-strand	1080	1	48
α-helix	1081	1
β-strand	1085-1094	10	44
β-strand	1095	1	41
α-helix	1099-1102	4
β-strand	1104-1105	2	13
β-strand	1111	1	49
β-strand	1118	1	49
α-helix	1119	1
β-strand	1128-1130	3	12
α-helix	1132-1141	10
α-helix	1144-1148	5
α-helix	1149-1154	6
β-strand	1158-1163	6	1
β-strand	1172-1174	3	50
β-strand	1179-1181	3	50
β-strand	1191-1196	6	1
α-helix	1198-1209	12
β-strand	1215-1217	3	2

Chain c: 6 helices, 3 β-strands

Element	Residues	Length	Sheet
α-helix	17-20	4
α-helix	27-36	10
β-strand	43	1	93
α-helix	46-72	27
β-strand	77-78	2	94
α-helix	80-89	10
α-helix	91-96	6
β-strand	101-102	2	95
α-helix	113-115	3

Chain C: 10 helices, 14 β-strands

Element	Residues	Length	Sheet
β-strand	7-13	7	51
β-strand	17-23	7	51
α-helix	27-39	13
β-strand	43-54	12	52
α-helix	60-69	10
β-strand	72-74	3	53
β-strand	96-104	9	52
β-strand	111-114	4	54
α-helix	115-117	3
β-strand	118-120	3	52
β-strand	129-132	4	53
α-helix	133	1
β-strand	143-147	5	54
β-strand	152-162	11	52
α-helix	168-170	3
β-strand	173	1	55
β-strand	177-180	4	51
α-helix	197-200	4
α-helix	207-209	3
α-helix	211-213	3
α-helix	218-219	2
β-strand	228-233	6	51
β-strand	234	1	55
α-helix	240-266	27

Chain d: 4 helices, 2 β-strands

Element	Residues	Length	Sheet
α-helix	35-45	11
β-strand	50-51	2	94
α-helix	53-80	28
β-strand	86	1	93
α-helix	88-98	11
α-helix	101-120	20

Chain D: 8 helices, 4 β-strands

Element	Residues	Length	Sheet
β-strand	5-6	2	31
α-helix	20-22	3
β-strand	36-38	3	71
β-strand	44-46	3	71
β-strand	49	1	31
α-helix	52-75	24
α-helix	121-133	13
α-helix	139-150	12
α-helix	157-170	14
α-helix	174-182	9
α-helix	188-194	7
α-helix	204-217	14

16 more chain groups are not listed. Open the entry in the viewer and use the sequence panel to see them.

Molecules and chains

Molecule	Chains	Type	Length	Organism	UniProt
RNA (5'-r(pupcpupupupupapupupupupupupcpupg)-3')	P	RNA	16	synthetic RNA
DNA (138-mer)	N	DNA	138	synthetic construct
DNA (148-mer)	T	DNA	148	synthetic construct
DNA-directed RNA polymerase II subunit RPB1	A	protein	1733	Saccharomyces cerevisiae	P04050 (AlphaFold model)
DNA-directed RNA polymerase II subunit RPB2	B	protein	1224	Saccharomyces cerevisiae	P08518 (AlphaFold model)
DNA-directed RNA polymerase II subunit RPB3	C	protein	318	Saccharomyces cerevisiae	P16370 (AlphaFold model)
DNA-directed RNA polymerases I, II, and III subunit RPABC1	E	protein	215	Saccharomyces cerevisiae	P20434 (AlphaFold model)
DNA-directed RNA polymerases I, II, and III subunit RPABC2	F	protein	155	Saccharomyces cerevisiae	P20435
DNA-directed RNA polymerases I, II, and III subunit RPABC3	H	protein	146	Saccharomyces cerevisiae	P20436
DNA-directed RNA polymerase II subunit RPB9	I	protein	122	Saccharomyces cerevisiae	P27999
DNA-directed RNA polymerases I, II, and III subunit RPABC5	J	protein	70	Saccharomyces cerevisiae	P22139
DNA-directed RNA polymerase II subunit RPB11	K	protein	120	Saccharomyces cerevisiae	P38902

11 more molecules are not listed.

Sequence of entity 1 (P), FASTA

>7NKY_1 RNA (5'-R(P*UP*CP*UP*UP*UP*UP*AP*UP*UP*UP*UP*UP*UP*CP*UP*G)-3') (chains P)
UCUUUUAUUUUUUCUG

Sequence of entity 2 (N), FASTA

>7NKY_2 DNA (138-MER) (chains N)
CTAGCACAGGGTGTCTGCTTATCGGTAGAGTGTCAATCCCCTTGGCGGTTAAAACGCGGG
GGACAGCGCGTACGTGCGTTTAAGCGGTGCTAGAGCTGTCTACGACCAATTGAGCGGCCT
CGGCACCGGGATTCTGAT

Sequence of entity 3 (T), FASTA

>7NKY_3 DNA (148-MER) (chains T)
ATCAGAATCCCGGTGCCGAGGCCGCTCAATTGGTCGTAGACAGCTCTAGCACCGCTTAAA
CGCACGTACGCGCTGTCCCCCGCGTTTTAACCGCCAAGGGGATTGACACTCTACCGATAA
GCAGACGACAGAAAAAACCCTGTGCTAG

Sequence of entity 4 (A), FASTA

>7NKY_4 DNA-directed RNA polymerase II subunit RPB1 (chains A)
MVGQQYSSAPLRTVKEVQFGLFSPEEVRAISVAKIRFPETMDETQTRAKIGGLNDPRLGS
IDRNLKCQTCQEGMNECPGHFGHIDLAKPVFHVGFIAKIKKVCECVCMHCGKLLLDEHNE
LMRQALAIKDSKKRFAAIWTLCKTKMVCETDVPSEDDPTQLVSRGGCGNTQPTIRKDGLK
LVGSWKKDRATGDADEPELRVLSTEEILNIFKHISVKDFTSLGFNEVFSRPEWMILTCLP
VPPPPVRPSISFNESQRGEDDLTFKLADILKANISLETLEHNGAPHHAIEEAESLLQFHV
ATYMDNDIAGQPQALQKSGRPVKSIRARLKGKEGRIRGNLMGKRVDFSARTVISGDPNLE
LDQVGVPKSIAKTLTYPEVVTPYNIDRLTQLVRNGPNEHPGAKYVIRDSGDRIDLRYSKR
AGDIQLQYGWKVERHIMDNDPVLFNRQPSLHKMSMMAHRVKVIPYSTFRLNLSVTSPYNA
DFDGDEMNLHVPQSEETRAELSQLCAVPLQIVSPQSNKPCMGIVQDTLCGIRKLTLRDTF
IELDQVLNMLYWVPDWDGVIPTPAIIKPKPLWSGKQILSVAIPNGIHLQRFDEGTTLLSP
KDNGMLIIDGQIIFGVVEKKTVGSSNGGLIHVVTREKGPQVCAKLFGNIQKVVNFWLLHN
GFSTGIGDTIADGPTMREITETIAEAKKKVLDVTKEAQANLLTAKHGMTLRESFEDNVVR
FLNEARDKAGRLAEVNLKDLNNVKQMVMAGSKGSFINIAQMSACVGQQSVEGKRIAFGFV
DRTLPHFSKDDYSPESKGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQRR
LVKALEDIMVHYDNTTRNSLGNVIQFIYGEDGMDAAHIEKQSLDTIGGSDAAFEKRYRVD
LLNTDHTLDPSLLESGSEILGDLKLQVLLDEEYKQLVKDRKFLREVFVDGEANWPLPVNI
RRIIQNAQQTFHIDHTKPSDLTIKDIVLGVKDLQENLLVLRGKNEIIQNAQRDAVTLFCC
LLRSRLATRRVLQEYRLTKQAFDWVLSNIEAQFLRSVVHPGEMVGVLAAQSIGEPATQMT
LNTFHFAGVASKKVTSGVPRLKEILNVAKNMKTPSLTVYLEPGHAADQEQAKLIRSAIEH
TTLKSVTIASEIYYDPDPRSTVIPEDEEIIQLHFSLLDEEAEQSFDQQSPWLLRLELDRA
AMNDKDLTMGQVGERIKQTFKNDLFVIWSEDNDEKLIIRCRVVRPKSLDAETEAEEDHML
KKIENTMLENITLRGVENIERVVMMKYDRKVPSPTGEYVKEPEWVLETDGVNLSEVMTVP
GIDPTRIYTNSFIDIMEVLGIEAGRAALYKEVYNVIASDGSYVNYRHMALLVDVMTTQGG
LTSVTRHGFNRSNTGALMRCSFEETVEILFEAGASAELDDCRGVSENVILGQMAPIGTGA
FDVMIDEESLVKYMPEQKITEIEDGQDGGVTPYSNESGLVNADLDVKDELMFSPLVDSGS
NDAMAGGFTAYGGADYGEATSPFGAYGEAPTSPGFGVSSPGFSPTSPTYSPTSPAYSPTS
PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS
PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPSYSPTSPSYSPTSP
SYSPTSPSYSPTSPNYSPTSPSYSPTSPGYSPGSPAYSPKQDEQKHNENENSR

Sequence of entity 5 (B), FASTA

>7NKY_5 DNA-directed RNA polymerase II subunit RPB2 (chains B)
MSDLANSEKYYDEDPYGFEDESAPITAEDSWAVISAFFREKGLVSQQLDSFNQFVDYTLQ
DIICEDSTLILEQLAQHTTESDNISRKYEISFGKIYVTKPMVNESDGVTHALYPQEARLR
NLTYSSGLFVDVKKRTYEAIDVPGRELKYELIAEESEDDSESGKVFIGRLPIMLRSKNCY
LSEATESDLYKLKECPFDMGGYFIINGSEKVLIAQERSAGNIVQVFKKAAPSPISHVAEI
RSALEKGSRFISTLQVKLYGREGSSARTIKATLPYIKQDIPIVIIFRALGIIPDGEILEH
ICYDVNDWQMLEMLKPCVEDGFVIQDRETALDFIGRRGTALGIKKEKRIQYAKDILQKEF
LPHITQLEGFESRKAFFLGYMINRLLLCALDRKDQDDRDHFGKKRLDLAGPLLAQLFKTL
FKKLTKDIFRYMQRTVEEAHDFNMKLAINAKTITSGLKYALATGNWGEQKKAMSSRAGVS
QVLNRYTYSSTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLS
LMSCISVGTDPMPIITFLSEWGMEPLEDYVPHQSPDATRVFVNGVWHGVHRNPARLMETL
RTLRRKGDINPEVSMIRDIREKELKIFTDAGRVYRPLFIVEDDESLGHKELKVRKGHIAK
LMATEYQDIEGGFEDVEEYTWSSLLNEGLVEYIDAEEEESILIAMQPEDLEPAEANEEND
LDVDPAKRIRVSHHATTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAMGV
FLTNYNVRMDTMANILYYPQKPLGTTRAMEYLKFRELPAGQNAIVAIACYSGYNQEDSMI
MNQSSIDRGLFRSLFFRSYMDQEKKYGMSITETFEKPQRTNTLRMKHGTYDKLDDDGLIA
PGVRVSGEDVIIGKTTPISPDEEELGQRTAYHSKRDASTPLRSTENGIVDQVLVTTNQDG
LKFVKVRVRTTKIPQIGDKFASRHGQKGTIGITYRREDMPFTAEGIVPDLIINPHAIPSR
MTVAHLIECLLSKVAALSGNEGDASPFTDITVEGISKLLREHGYQSRGFEVMYNGHTGKK
LMAQIFFGPTYYQRLRHMVDDKIHARARGPMQVLTRQPVEGRSRDGGLRFGEMERDCMIA
HGAASFLKERLMEASDAFRVHICGICGLMTVIAKLNHNQFECKGCDNKIDIYQIHIPYAA
KLLFQELMAMNITPRLYTDRSRDF

Sequence of entity 6 (C), FASTA

>7NKY_6 DNA-directed RNA polymerase II subunit RPB3 (chains C)
MSEEGPQVKIREASKDNVDFILSNVDLAMANSLRRVMIAEIPTLAIDSVEVETNTTVLAD
EFIAHRLGLIPLQSMDIEQLEYSRDCFCEDHCDKCSVVLTLQAFGESESTTNVYSKDLVI
VSNLMGRNIGHPIIQDKEGNGVLICKLRKGQELKLTCVAKKGIAKEHAKWGPAAAIEFEY
DPWNKLKHTDYWYEQDSAKEWPQSKNCEYEDPPNEGDPFDYKAQADTFYMNVESVGSIPV
DQVVVRGIDTLQKKVASILLALTQMDQDKVNFASGDNNTASNMLGSNEDVMMTGAEQDPY
SNASQMGNTGSGGYDNAW

Sequence of entity 7 (E), FASTA

>7NKY_7 DNA-directed RNA polymerases I, II, and III subunit RPABC1 (chains E)
MDQENERNISRLWRAFRTVKEMVKDRGYFITQEEVELPLEDFKAKYCDSMGRPQRKMMSF
QANPTEESISKFPDMGSLWVEFCDEPSVGVKTMKTFVIHIQEKNFQTGIFVYQNNITPSA
MKLVPSIPPATIETFNEAALVVNITHHELVPKHIRLSSDEKRELLKRYRLKESQLPRIQR
ADPVALYLGLKRGEVVKIIRKSETSGRYASYRICM

Sequence of entity 8 (F), FASTA

>7NKY_8 DNA-directed RNA polymerases I, II, and III subunit RPABC2 (chains F)
MSDYEEAFNDGNENFEDFDVEHFSDEETYEEKPQFKDGETTDANGKTIVTGGNGPEDFQQ
HEQIRRKTLKEKAIPKDQRATTPYMTKYERARILGTRALQISMNAPVFVDLEGETDPLRI
AMKELAEKKIPLVIRRYLPDGSFEDWSVEELIVDL

Sequence of entity 9 (H), FASTA

>7NKY_9 DNA-directed RNA polymerases I, II, and III subunit RPABC3 (chains H)
MSNTLFDDIFQVSEVDPGRYNKVCRIEAASTTQDQCKLTLDINVELFPVAAQDSLTVTIA
SSLNLEDTPANDSSATRSWRPPQAGDRSLADDYDYVMYGTAYKFEEVSKDLIAVYYSFGG
LLMRLEGNYRNLNNLKQENAYLLIRR

Sequence of entity 10 (I), FASTA

>7NKY_10 DNA-directed RNA polymerase II subunit RPB9 (chains I)
MTTFRFCRDCNNMLYPREDKENNRLLFECRTCSYVEEAGSPLVYRHELITNIGETAGVVQ
DIGSDPTLPRSDRECPKCHSRENVFFQSQQRRKDTSMVLFFVCLSCSHIFTSDQKNKRTQ
FS

Sequence of entity 11 (J), FASTA

>7NKY_11 DNA-directed RNA polymerases I, II, and III subunit RPABC5 (chains J)
MIVPVRCFSCGKVVGDKWESYLNLLQEDELDEGTALSRLGLKRYCCRRMILTHVDLIEKF
LRYNPLEKRD

Sequence of entity 12 (K), FASTA

>7NKY_12 DNA-directed RNA polymerase II subunit RPB11 (chains K)
MNAPDRFELFLLGEGESKLKIDPDTKAPNAVVITFEKEDHTLGNLIRAELLNDRKVLFAA
YKVEHPFFARFKLRIQTTEGYDPKDALKNACNSIINKLGALKTNFETEWNLQTLAADDAF

Ligands and cofactors

ID	Name	Formula	Copies
ZN	Zinc ion	Zn	9
MG	Magnesium ion	Mg	1

Primary citation

Structural basis of nucleosome transcription mediated by Chd1 and FACT. Farnung, L., Ochmann, M., Engeholm, M. et al. Nat Struct Mol Biol (2021) 28:382-387. DOI 10.1038/s41594-021-00578-6 · PubMed

Other PDB entries of the same protein (UniProt P04050 (AlphaFold model), which also has an AlphaFold model), best resolution first:

5VKO 1.8 Å, SPT6 tSH2-RPB1 1468-1500 pT1471, pS1493
9SV6 1.96 Å, CryoEM structure of transcribing RNA polymerase II elongation complex with ATP and Elf1
5VKL 2.2 Å, SPT6 tSH2-RPB1 1476-1500 pS1493
9W8V 2.23 Å, Structure of post-translocation state of yeast Pol II complexed with a cisplatin-induced…
9QEB 2.26 Å, CryoEM structure of transcribing RNA polymerase II elongation complex
1TWF 2.3 Å, RNA polymerase II complexed with UTP at 2.3 A resolution
9RYB 2.33 Å, CryoEM structure of transcribing RNA polymerase II elongation complex in post-catalysis…
9KD8 2.46 Å, The structure of RNA polymerase II elongation complex paused at N-2 state by actinomycin…
6NPW 2.49 Å, SSu72/Sympk in complex with Ser2/Ser5 phosphorylated peptide
9K7F 2.5 Å, RNA polymerase II elongation complex apo structure.
30ES 2.54 Å, Cryo-EM structure of the yeast RNA polymerase II elongation complex with 19-mer RNA in…
30EP 2.55 Å, Cryo-EM structure of the yeast RNA polymerase II elongation complex with 19-mer RNA in…

Browse structure collections

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